Wall clock time and date at job start Tue Mar 31 2020 03:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00006 * 2 1 4 4 N 1.34773 * 120.00097 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00081 * 359.97438 * 4 2 1 6 6 C 1.46502 * 120.00337 * 179.97438 * 4 2 1 7 7 C 1.50698 * 109.47041 * 89.99741 * 6 4 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 4 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 1.09002 * 109.46713 * 239.99928 * 1 2 3 26 26 H 1.09001 * 109.46926 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47366 * 119.99532 * 1 2 3 28 28 H 1.09000 * 109.47427 * 270.00693 * 5 4 2 29 29 H 1.09005 * 109.46957 * 29.99959 * 5 4 2 30 30 H 1.08999 * 109.47733 * 149.99755 * 5 4 2 31 31 H 1.09001 * 109.46466 * 329.99743 * 6 4 2 32 32 H 1.09001 * 109.47257 * 209.99954 * 6 4 2 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 41 41 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4484 -2.4359 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1488 -1.1675 1.4195 8 8 3.3610 -1.1681 2.3416 9 7 5.4740 -1.1671 1.6653 10 6 5.9795 -1.1668 3.0448 11 6 6.9570 -2.3339 3.2151 12 6 8.0485 -2.2365 2.1425 13 6 9.0471 -3.3809 2.3275 14 7 9.7415 -3.2210 3.6076 15 6 10.6878 -4.1331 3.9917 16 1 10.9220 -4.9707 3.3513 17 6 11.3462 -3.9813 5.2043 18 7 11.0612 -2.9603 5.9846 19 14 12.6376 -5.2252 5.7281 20 1 12.7715 -6.2702 4.6816 21 1 13.9411 -4.5379 5.9117 22 1 12.2264 -5.8567 7.0078 23 6 7.4137 -2.3334 0.7534 24 6 6.4405 -1.1658 0.5587 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 1.2670 -2.7508 1.0271 29 1 0.4958 -2.3055 -0.5140 30 1 2.0372 -3.1955 -0.5148 31 1 4.0090 -0.2771 -0.5149 32 1 4.0090 -2.0571 -0.5153 33 1 6.4940 -0.2270 3.2452 34 1 5.1472 -1.2829 3.7390 35 1 7.4101 -2.2875 4.2054 36 1 6.4210 -3.2765 3.1036 37 1 8.5674 -1.2828 2.2390 38 1 8.5150 -4.3322 2.3192 39 1 9.7738 -3.3640 1.5153 40 1 9.5309 -2.4690 4.1829 41 1 11.5210 -2.8544 6.8321 42 1 6.8737 -3.2760 0.6651 43 1 8.1931 -2.2879 -0.0073 44 1 5.9127 -1.2837 -0.3876 45 1 6.9908 -0.2248 0.5554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204574672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:01 Heat of formation + Delta-G solvation = -59.382612 kcal Electronic energy + Delta-G solvation = -24470.610061 eV Core-core repulsion = 20909.404298 eV Total energy + Delta-G solvation = -3561.205763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65145 -39.51691 -37.64757 -35.67187 -34.95117 -32.87759 -31.54610 -30.75023 -30.30560 -28.32702 -26.83936 -26.03033 -23.83038 -23.04866 -21.88785 -20.56447 -19.67686 -18.85919 -17.62588 -17.27920 -16.94920 -16.62305 -15.81491 -15.32149 -15.19934 -14.75848 -14.33917 -13.89386 -13.78301 -13.64133 -13.61181 -13.43123 -13.23431 -13.03132 -12.83156 -12.71067 -12.46883 -12.41294 -12.15499 -12.04864 -11.78282 -11.19038 -10.99899 -10.85262 -10.48955 -10.37275 -10.19474 -10.14110 -10.10254 -9.95278 -9.66359 -8.94437 -8.87528 -8.61526 -6.91550 -5.76816 -3.05135 2.27377 2.55191 2.59668 3.09455 3.42978 3.48427 3.50825 4.28270 4.36317 4.57324 4.66592 4.71564 4.80663 4.93920 4.96250 4.96861 5.04893 5.06250 5.18253 5.25966 5.37645 5.38207 5.43668 5.52753 5.56591 5.63170 5.80296 5.92384 5.93870 6.03009 6.10669 6.15242 6.28522 6.38772 6.49377 6.69030 6.79773 6.90691 7.00139 7.35800 7.70189 7.86191 8.12108 8.42380 9.53495 10.11919 10.46291 11.46216 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039810 B = 0.002590 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.164644 B =10809.592400 C =10903.867147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.517 3.483 3 O -0.544 6.544 4 N -0.603 5.603 5 C 0.079 3.921 6 C 0.096 3.904 7 C 0.499 3.501 8 O -0.538 6.538 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.122 4.122 12 C -0.095 4.095 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.126 4.126 24 C 0.107 3.893 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.028 2.649 -16.822 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.306 3.694 3 O -0.421 6.421 4 N -0.336 5.336 5 C -0.064 4.064 6 C -0.030 4.030 7 C 0.285 3.715 8 O -0.415 6.415 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.160 4.160 12 C -0.114 4.114 13 C 0.031 3.969 14 N -0.377 5.377 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.165 4.165 24 C -0.016 4.016 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.042 3.060 -16.337 26.037 hybrid contribution 0.870 -0.617 0.616 1.231 sum -19.172 2.444 -15.721 24.913 Atomic orbital electron populations 1.21921 0.91395 1.05476 1.04173 1.20829 0.90807 0.82826 0.74947 1.90722 1.70790 1.31095 1.49449 1.47468 1.05260 1.07074 1.73799 1.21877 0.97028 0.84789 1.02696 1.21373 0.81424 1.05387 0.94847 1.21077 0.82154 0.76291 0.91954 1.90673 1.54884 1.49806 1.46107 1.48173 1.05120 1.72828 1.08008 1.21703 0.98166 0.99175 0.82070 1.21963 0.95806 0.97474 1.00779 1.21366 0.95980 1.00669 0.93354 1.20660 0.92169 0.94443 0.89610 1.42388 1.45653 1.31105 1.18520 1.19270 1.12582 1.03696 1.01397 0.91214 1.24743 1.00560 0.98425 0.97371 1.69665 1.45415 1.30646 1.12499 0.86123 0.81393 0.80514 0.78196 1.20599 1.21880 1.21885 1.21920 0.98341 0.97941 0.98290 1.21823 0.91176 0.99783 0.88834 0.89152 0.89020 0.89367 0.91880 0.90564 0.90896 0.86954 0.87461 0.91468 0.89354 0.89395 0.91960 0.90922 0.96506 0.96415 0.78236 0.93559 0.91510 0.90451 0.90263 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 8.87 36.01 0.32 -0.81 16 2 C 0.52 5.80 7.78 -10.99 -0.09 5.71 16 3 O -0.54 -8.47 16.66 5.56 0.09 -8.38 16 4 N -0.60 -5.79 2.36 -182.95 -0.43 -6.22 16 5 C 0.08 0.47 10.29 59.85 0.62 1.09 16 6 C 0.10 0.94 4.28 -5.19 -0.02 0.91 16 7 C 0.50 6.76 7.77 -10.99 -0.09 6.67 16 8 O -0.54 -9.32 15.84 5.56 0.09 -9.23 16 9 N -0.61 -7.71 2.97 -172.74 -0.51 -8.23 16 10 C 0.11 1.59 6.42 -3.71 -0.02 1.57 16 11 C -0.12 -1.90 5.27 -26.45 -0.14 -2.04 16 12 C -0.09 -1.44 2.19 -90.42 -0.20 -1.64 16 13 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 14 N -0.73 -18.31 5.32 -59.91 -0.32 -18.63 16 15 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 19 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C -0.13 -1.41 5.37 -26.59 -0.14 -1.56 16 24 C 0.11 1.05 6.34 -3.68 -0.02 1.02 16 25 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 26 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.09 0.34 7.40 -51.93 -0.38 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.26 6.44 -51.93 -0.33 -0.08 16 30 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 31 H 0.11 1.10 7.22 -51.93 -0.37 0.72 16 32 H 0.11 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.09 1.59 7.16 -51.93 -0.37 1.22 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 10.05 6.85 -40.82 -0.28 9.77 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -36.75 361.80 -7.39 -44.14 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.41 Total: 4.54 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.05 Total: 6.66 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.54 Total: -60.63 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.18 Total: -17.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.75 -7.39 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204574672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.243 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds