Wall clock time and date at job start Tue Mar 31 2020 03:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00006 * 2 1 4 4 N 1.34773 * 120.00097 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00081 * 359.97438 * 4 2 1 6 6 C 1.46502 * 120.00337 * 179.97438 * 4 2 1 7 7 C 1.50698 * 109.47041 * 89.99741 * 6 4 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 4 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 1.09002 * 109.46713 * 239.99928 * 1 2 3 26 26 H 1.09001 * 109.46926 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47366 * 119.99532 * 1 2 3 28 28 H 1.09000 * 109.47427 * 270.00693 * 5 4 2 29 29 H 1.09005 * 109.46957 * 29.99959 * 5 4 2 30 30 H 1.08999 * 109.47733 * 149.99755 * 5 4 2 31 31 H 1.09001 * 109.46466 * 329.99743 * 6 4 2 32 32 H 1.09001 * 109.47257 * 209.99954 * 6 4 2 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 41 41 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4484 -2.4359 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1488 -1.1675 1.4195 8 8 3.3610 -1.1681 2.3416 9 7 5.4740 -1.1671 1.6653 10 6 5.9795 -1.1668 3.0448 11 6 6.9570 -2.3339 3.2151 12 6 8.0485 -2.2365 2.1425 13 6 9.0471 -3.3809 2.3275 14 7 9.7415 -3.2210 3.6076 15 6 10.6878 -4.1331 3.9917 16 1 10.9220 -4.9707 3.3513 17 6 11.3462 -3.9813 5.2043 18 7 11.0612 -2.9603 5.9846 19 14 12.6376 -5.2252 5.7281 20 1 12.7715 -6.2702 4.6816 21 1 13.9411 -4.5379 5.9117 22 1 12.2264 -5.8567 7.0078 23 6 7.4137 -2.3334 0.7534 24 6 6.4405 -1.1658 0.5587 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 1.2670 -2.7508 1.0271 29 1 0.4958 -2.3055 -0.5140 30 1 2.0372 -3.1955 -0.5148 31 1 4.0090 -0.2771 -0.5149 32 1 4.0090 -2.0571 -0.5153 33 1 6.4940 -0.2270 3.2452 34 1 5.1472 -1.2829 3.7390 35 1 7.4101 -2.2875 4.2054 36 1 6.4210 -3.2765 3.1036 37 1 8.5674 -1.2828 2.2390 38 1 8.5150 -4.3322 2.3192 39 1 9.7738 -3.3640 1.5153 40 1 9.5309 -2.4690 4.1829 41 1 11.5210 -2.8544 6.8321 42 1 6.8737 -3.2760 0.6651 43 1 8.1931 -2.2879 -0.0073 44 1 5.9127 -1.2837 -0.3876 45 1 6.9908 -0.2248 0.5554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204574672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:00 Heat of formation + Delta-G solvation = -85.352824 kcal Electronic energy + Delta-G solvation = -24471.736214 eV Core-core repulsion = 20909.404298 eV Total energy + Delta-G solvation = -3562.331916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59131 -40.45327 -38.84710 -36.62991 -36.42386 -34.50620 -32.60285 -32.21805 -31.35205 -29.10125 -28.06635 -26.91640 -25.50591 -24.17873 -23.33933 -21.71362 -20.66005 -19.81562 -19.18493 -18.42174 -18.00052 -17.45570 -16.77835 -16.66130 -16.27597 -16.09740 -15.63053 -15.40443 -15.32427 -14.78499 -14.63557 -14.35596 -14.19254 -13.92560 -13.82750 -13.56344 -13.48789 -13.26207 -13.13753 -13.06484 -12.93056 -12.78594 -12.66113 -12.22251 -12.11266 -11.98235 -11.68053 -11.47522 -11.39918 -11.10093 -10.98882 -10.92907 -9.74734 -9.69497 -8.98778 -7.95726 -5.23928 1.45190 1.46491 1.47286 1.54480 1.57365 1.87803 2.21263 2.55592 3.38090 3.47335 3.68605 3.74710 3.85184 3.89050 4.07642 4.15477 4.25935 4.30414 4.31758 4.33738 4.43632 4.47974 4.56984 4.62488 4.73479 4.74804 4.76031 4.88430 4.93882 4.96617 5.00220 5.08462 5.11080 5.15165 5.25417 5.35719 5.47493 5.53906 5.57352 6.27153 6.30849 6.37694 7.04822 7.13932 7.33223 8.11105 8.32998 9.28192 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039810 B = 0.002590 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.164644 B =10809.592400 C =10903.867147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.599 6.599 4 N -0.603 5.603 5 C 0.073 3.927 6 C 0.097 3.903 7 C 0.491 3.509 8 O -0.585 6.585 9 N -0.607 5.607 10 C 0.118 3.882 11 C -0.111 4.111 12 C -0.086 4.086 13 C 0.157 3.843 14 N -0.746 5.746 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.295 1.295 23 C -0.117 4.117 24 C 0.105 3.895 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.026 0.974 40 H 0.373 0.627 41 H 0.250 0.750 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.782 1.340 -19.807 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.481 6.481 4 N -0.335 5.335 5 C -0.068 4.068 6 C -0.029 4.029 7 C 0.280 3.720 8 O -0.465 6.465 9 N -0.340 5.340 10 C -0.005 4.005 11 C -0.149 4.149 12 C -0.105 4.105 13 C 0.031 3.969 14 N -0.389 5.389 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.155 4.155 24 C -0.016 4.016 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.805 1.696 -19.392 28.492 hybrid contribution 1.075 -0.244 1.522 1.879 sum -19.730 1.452 -17.870 26.660 Atomic orbital electron populations 1.21949 0.88125 1.05948 1.06243 1.21697 0.92618 0.82473 0.73830 1.90687 1.72145 1.33059 1.52181 1.47694 1.05445 1.07938 1.72440 1.22130 0.98616 0.83635 1.02459 1.21534 0.81906 1.07386 0.92115 1.21900 0.81827 0.75036 0.93269 1.90650 1.56046 1.51961 1.47891 1.48279 1.05721 1.72227 1.07777 1.21435 0.97058 0.98525 0.83474 1.21782 0.96031 0.97734 0.99391 1.21282 0.94813 0.98471 0.95926 1.20855 0.92768 0.96063 0.87252 1.42637 1.45668 1.30283 1.20311 1.19686 1.12468 1.03928 1.01320 0.90616 1.25582 1.03169 1.00540 0.97796 1.69825 1.46895 1.32672 1.12816 0.85073 0.78471 0.78480 0.77744 1.18894 1.22031 1.22216 1.21874 0.99048 0.98969 0.95626 1.22072 0.90712 0.99483 0.89337 0.88168 0.89502 0.85859 0.93510 0.87566 0.88675 0.86760 0.83244 0.91391 0.91272 0.92735 0.92510 0.91640 0.96604 0.95637 0.79443 0.94074 0.90781 0.88232 0.86214 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.87 71.24 0.63 -1.20 16 2 C 0.50 10.71 7.78 87.66 0.68 11.39 16 3 O -0.60 -18.76 16.66 -3.04 -0.05 -18.81 16 4 N -0.60 -10.28 2.36 -851.12 -2.01 -12.29 16 5 C 0.07 0.65 10.29 127.77 1.31 1.96 16 6 C 0.10 1.63 4.28 85.63 0.37 2.00 16 7 C 0.49 12.80 7.77 87.66 0.68 13.48 16 8 O -0.59 -20.57 15.84 -3.03 -0.05 -20.61 16 9 N -0.61 -14.67 2.97 -818.81 -2.43 -17.11 16 10 C 0.12 3.47 6.42 86.36 0.55 4.03 16 11 C -0.11 -3.54 5.27 30.78 0.16 -3.38 16 12 C -0.09 -2.54 2.19 -10.66 -0.02 -2.56 16 13 C 0.16 6.00 5.65 86.38 0.49 6.49 16 14 N -0.75 -37.80 5.32 -343.45 -1.83 -39.63 16 15 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 18 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 19 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 23 C -0.12 -2.25 5.37 30.69 0.16 -2.08 16 24 C 0.11 1.73 6.34 86.38 0.55 2.28 16 25 H 0.10 0.94 8.11 -2.39 -0.02 0.92 16 26 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 27 H 0.12 0.48 7.40 -2.39 -0.02 0.46 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.29 6.44 -2.38 -0.02 0.28 16 30 H 0.09 0.44 7.89 -2.39 -0.02 0.42 16 31 H 0.11 1.95 7.22 -2.39 -0.02 1.93 16 32 H 0.15 1.20 7.45 -2.39 -0.02 1.18 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 35 H 0.05 2.10 7.16 -2.39 -0.02 2.08 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.37 20.22 6.85 -92.71 -0.63 19.58 16 41 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.12 1.07 5.93 -2.39 -0.01 1.05 16 45 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -83.60 361.80 3.16 -80.44 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.34 Total: 23.87 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.88 Total: 15.56 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.99 Total: -128.93 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.10 Total: -39.42 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -83.60 3.16 -80.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204574672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.913 kcal (2) G-P(sol) polarization free energy of solvation -83.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds