Wall clock time and date at job start Tue Mar 31 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 120.00145 * 2 1 4 4 N 1.34779 * 119.99495 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99495 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.47558 * 324.99711 * 5 4 2 7 7 C 1.53004 * 109.47068 * 85.00206 * 5 4 2 8 8 C 1.50708 * 109.47050 * 205.00153 * 5 4 2 9 9 O 1.21277 * 119.99849 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99714 * 180.28054 * 8 5 4 11 11 C 1.46499 * 119.99644 * 179.72684 * 10 8 5 12 12 C 1.53000 * 109.47090 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46126 * 295.02365 * 12 11 10 14 14 C 1.53194 * 109.31587 * 178.60127 * 13 12 11 15 15 N 1.46926 * 108.76272 * 54.65449 * 14 13 12 16 16 C 1.36934 * 120.62677 * 126.36061 * 15 14 13 17 17 H 1.08007 * 120.00068 * 208.01741 * 16 15 14 18 18 C 1.38820 * 120.00239 * 28.02501 * 16 15 14 19 19 N 1.31612 * 119.99868 * 17.51933 * 18 16 15 20 20 Si 1.86797 * 119.99952 * 197.52200 * 18 16 15 21 21 H 1.48502 * 109.47249 * 94.06483 * 20 18 16 22 22 H 1.48503 * 109.46757 * 214.06385 * 20 18 16 23 23 H 1.48495 * 109.47486 * 334.06322 * 20 18 16 24 24 C 1.46922 * 118.73862 * 306.38337 * 15 14 13 25 25 C 1.53038 * 109.46274 * 174.97137 * 12 11 10 26 26 H 1.08995 * 109.46928 * 269.99773 * 1 2 3 27 27 H 1.09001 * 109.46815 * 29.99892 * 1 2 3 28 28 H 1.08994 * 109.47174 * 149.99711 * 1 2 3 29 29 H 0.96995 * 120.00483 * 359.97438 * 4 2 1 30 30 H 1.08996 * 109.46832 * 299.99878 * 7 5 4 31 31 H 1.09003 * 109.46765 * 59.99822 * 7 5 4 32 32 H 1.08999 * 109.46978 * 179.97438 * 7 5 4 33 33 H 0.96996 * 120.00271 * 359.71770 * 10 8 5 34 34 H 1.09000 * 109.47307 * 299.99261 * 11 10 8 35 35 H 1.08993 * 109.47372 * 59.99479 * 11 10 8 36 36 H 1.08998 * 109.46314 * 54.99561 * 12 11 10 37 37 H 1.09004 * 109.49656 * 298.56929 * 13 12 11 38 38 H 1.09003 * 109.49800 * 58.65826 * 13 12 11 39 39 H 1.08998 * 109.59428 * 294.86633 * 14 13 12 40 40 H 1.09005 * 109.70005 * 174.50897 * 14 13 12 41 41 H 0.97002 * 120.00489 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.58680 * 293.81804 * 24 15 14 43 43 H 1.09009 * 109.70085 * 173.46746 * 24 15 14 44 44 H 1.09005 * 109.49604 * 301.33829 * 25 12 11 45 45 H 1.09006 * 109.49987 * 61.42936 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0090 -0.3254 -0.5905 7 6 4.1564 -1.0419 1.4358 8 6 4.1479 -2.4549 -0.6021 9 8 3.3597 -3.2904 -0.9911 10 7 5.4730 -2.6804 -0.7016 11 6 5.9610 -3.9347 -1.2803 12 6 7.4910 -3.9368 -1.2763 13 6 8.0049 -2.8346 -2.2053 14 6 9.5364 -2.8169 -2.1719 15 7 10.0318 -4.1609 -2.4989 16 6 10.9419 -4.3430 -3.5056 17 1 10.9712 -5.2787 -4.0444 18 6 11.8271 -3.3252 -3.8337 19 7 12.0387 -2.3392 -2.9881 20 14 12.7179 -3.3552 -5.4753 21 1 11.9545 -2.5563 -6.4674 22 1 14.0755 -2.7759 -5.3124 23 1 12.8318 -4.7572 -5.9512 24 6 9.5316 -5.3056 -1.7256 25 6 8.0002 -5.2952 -1.7638 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6959 -2.0073 -0.0005 30 1 3.7932 -0.1107 1.8704 31 1 3.7932 -1.8839 2.0251 32 1 5.2464 -1.0424 1.4354 33 1 6.1034 -2.0123 -0.3901 34 1 5.5947 -4.7742 -0.6895 35 1 5.6005 -4.0266 -2.3048 36 1 7.8518 -3.7558 -0.2638 37 1 7.6652 -3.0285 -3.2227 38 1 7.6227 -1.8699 -1.8714 39 1 9.8770 -2.5341 -1.1759 40 1 9.9116 -2.1010 -2.9033 41 1 12.6569 -1.6277 -3.2174 42 1 9.8720 -5.2259 -0.6932 43 1 9.9017 -6.2336 -2.1617 44 1 7.6148 -6.0822 -1.1156 45 1 7.6606 -5.4658 -2.7854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222308223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:56 Heat of formation + Delta-G solvation = -69.650478 kcal Electronic energy + Delta-G solvation = -24297.203308 eV Core-core repulsion = 20735.552297 eV Total energy + Delta-G solvation = -3561.651011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57867 -39.32700 -37.88540 -35.30978 -35.00894 -33.07481 -31.81384 -30.60534 -29.89075 -29.14485 -26.96673 -24.82856 -23.68083 -22.29231 -21.19153 -20.83610 -20.41706 -19.17261 -18.01190 -17.00829 -16.79568 -16.21764 -15.73563 -15.32686 -15.25388 -14.84526 -14.22226 -14.04553 -13.78000 -13.69116 -13.54188 -13.24922 -13.04945 -12.85947 -12.64425 -12.46241 -12.38635 -12.37590 -11.95194 -11.82179 -11.42908 -11.02006 -10.75407 -10.56493 -10.28112 -10.26223 -10.22649 -10.06365 -9.92441 -9.61278 -9.50533 -9.42250 -9.10753 -8.48985 -6.69933 -5.81367 -3.23423 2.30386 2.42450 2.65585 3.25623 3.36525 3.43959 3.44964 4.37435 4.48122 4.55492 4.73603 4.84970 4.90683 5.03882 5.05727 5.18639 5.26306 5.31108 5.39219 5.42330 5.52865 5.54797 5.78522 5.81529 5.85453 5.97600 6.05955 6.10374 6.23149 6.32534 6.45990 6.53072 6.63088 6.71772 6.77905 6.94892 7.20029 7.30732 7.35945 7.61498 7.77968 7.90947 8.00283 8.42987 9.19309 9.82819 10.39315 11.27201 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002753 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.070487 B =10167.258134 C =10655.533141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.115 0.885 7 C -0.159 4.159 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.716 5.716 11 C 0.124 3.876 12 C -0.091 4.091 13 C -0.136 4.136 14 C 0.170 3.830 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.146 3.854 25 C -0.124 4.124 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.410 0.590 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.556 1.234 8.774 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.368 5.368 5 C 0.013 3.987 6 H 0.133 0.867 7 C -0.218 4.218 8 C 0.294 3.706 9 O -0.421 6.421 10 N -0.367 5.367 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.175 4.175 14 C 0.045 3.955 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.019 3.981 25 C -0.164 4.164 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.247 0.753 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.240 0.760 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.538 1.494 8.457 21.342 hybrid contribution 0.611 -0.043 -0.697 0.928 sum -18.928 1.450 7.759 20.508 Atomic orbital electron populations 1.21867 0.91250 1.05110 1.04850 1.20850 0.90756 0.83158 0.75194 1.90734 1.70744 1.31355 1.49685 1.45871 1.05792 1.09741 1.75368 1.20787 0.82201 0.97132 0.98600 0.86728 1.22131 1.01944 1.03433 0.94250 1.20518 0.82993 0.88224 0.78831 1.90684 1.55310 1.46734 1.49408 1.46024 1.06434 1.21487 1.62751 1.21610 0.95064 0.84759 0.98520 1.21319 0.91467 0.97865 1.00333 1.22264 1.00930 0.95698 0.98604 1.20764 0.87164 0.88210 0.99401 1.44052 1.48108 1.01389 1.37972 1.19208 1.09474 1.01330 1.08176 0.91678 1.25039 0.97190 0.99020 0.98435 1.70031 1.37503 1.13539 1.33662 0.86282 0.78791 0.77730 0.84024 1.21479 1.21780 1.20386 1.20879 0.90528 0.91980 0.94665 1.21986 0.99254 0.94553 1.00627 0.88753 0.88722 0.89970 0.75282 0.90767 0.91749 0.90684 0.76036 0.91756 0.91478 0.91215 0.92473 0.93580 0.96490 0.89516 0.93648 0.96522 0.92718 0.92937 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.30 36.01 0.37 -0.61 16 2 C 0.51 5.09 7.90 -10.98 -0.09 5.00 16 3 O -0.55 -7.64 16.76 5.56 0.09 -7.55 16 4 N -0.71 -6.68 4.95 -54.93 -0.27 -6.95 16 5 C 0.12 1.22 2.99 -69.08 -0.21 1.01 16 6 H 0.12 1.24 7.58 -51.93 -0.39 0.84 16 7 C -0.16 -1.32 9.38 37.16 0.35 -0.97 16 8 C 0.51 6.10 7.22 -10.98 -0.08 6.02 16 9 O -0.54 -8.07 15.84 5.56 0.09 -7.98 16 10 N -0.72 -8.17 5.16 -60.30 -0.31 -8.49 16 11 C 0.12 1.62 5.06 -4.04 -0.02 1.60 16 12 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 13 C -0.14 -2.37 5.25 -26.61 -0.14 -2.50 16 14 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 15 N -0.59 -14.40 2.99 -172.32 -0.52 -14.92 16 16 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 19 N -0.90 -25.86 11.22 55.49 0.62 -25.23 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 2.93 6.51 -3.71 -0.02 2.90 16 25 C -0.12 -2.00 5.36 -26.61 -0.14 -2.14 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.41 3.42 7.79 -40.82 -0.32 3.10 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.54 7.55 -51.93 -0.39 0.14 16 33 H 0.40 3.98 7.06 -40.82 -0.29 3.69 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.70 7.15 -51.93 -0.37 0.33 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.08 7.94 -51.92 -0.41 0.67 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -32.90 362.97 -7.82 -40.72 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.54 Total: 2.81 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.43 Total: 5.61 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.48 Total: -55.59 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.18 Total: -15.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.90 -7.82 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222308223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.935 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds