Wall clock time and date at job start Tue Mar 31 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 120.00145 * 2 1 4 4 N 1.34779 * 119.99495 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99495 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.47558 * 324.99711 * 5 4 2 7 7 C 1.53004 * 109.47068 * 85.00206 * 5 4 2 8 8 C 1.50708 * 109.47050 * 205.00153 * 5 4 2 9 9 O 1.21277 * 119.99849 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99714 * 180.28054 * 8 5 4 11 11 C 1.46499 * 119.99644 * 179.72684 * 10 8 5 12 12 C 1.53000 * 109.47090 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46126 * 295.02365 * 12 11 10 14 14 C 1.53194 * 109.31587 * 178.60127 * 13 12 11 15 15 N 1.46926 * 108.76272 * 54.65449 * 14 13 12 16 16 C 1.36934 * 120.62677 * 126.36061 * 15 14 13 17 17 H 1.08007 * 120.00068 * 208.01741 * 16 15 14 18 18 C 1.38820 * 120.00239 * 28.02501 * 16 15 14 19 19 N 1.31612 * 119.99868 * 17.51933 * 18 16 15 20 20 Si 1.86797 * 119.99952 * 197.52200 * 18 16 15 21 21 H 1.48502 * 109.47249 * 94.06483 * 20 18 16 22 22 H 1.48503 * 109.46757 * 214.06385 * 20 18 16 23 23 H 1.48495 * 109.47486 * 334.06322 * 20 18 16 24 24 C 1.46922 * 118.73862 * 306.38337 * 15 14 13 25 25 C 1.53038 * 109.46274 * 174.97137 * 12 11 10 26 26 H 1.08995 * 109.46928 * 269.99773 * 1 2 3 27 27 H 1.09001 * 109.46815 * 29.99892 * 1 2 3 28 28 H 1.08994 * 109.47174 * 149.99711 * 1 2 3 29 29 H 0.96995 * 120.00483 * 359.97438 * 4 2 1 30 30 H 1.08996 * 109.46832 * 299.99878 * 7 5 4 31 31 H 1.09003 * 109.46765 * 59.99822 * 7 5 4 32 32 H 1.08999 * 109.46978 * 179.97438 * 7 5 4 33 33 H 0.96996 * 120.00271 * 359.71770 * 10 8 5 34 34 H 1.09000 * 109.47307 * 299.99261 * 11 10 8 35 35 H 1.08993 * 109.47372 * 59.99479 * 11 10 8 36 36 H 1.08998 * 109.46314 * 54.99561 * 12 11 10 37 37 H 1.09004 * 109.49656 * 298.56929 * 13 12 11 38 38 H 1.09003 * 109.49800 * 58.65826 * 13 12 11 39 39 H 1.08998 * 109.59428 * 294.86633 * 14 13 12 40 40 H 1.09005 * 109.70005 * 174.50897 * 14 13 12 41 41 H 0.97002 * 120.00489 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.58680 * 293.81804 * 24 15 14 43 43 H 1.09009 * 109.70085 * 173.46746 * 24 15 14 44 44 H 1.09005 * 109.49604 * 301.33829 * 25 12 11 45 45 H 1.09006 * 109.49987 * 61.42936 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0090 -0.3254 -0.5905 7 6 4.1564 -1.0419 1.4358 8 6 4.1479 -2.4549 -0.6021 9 8 3.3597 -3.2904 -0.9911 10 7 5.4730 -2.6804 -0.7016 11 6 5.9610 -3.9347 -1.2803 12 6 7.4910 -3.9368 -1.2763 13 6 8.0049 -2.8346 -2.2053 14 6 9.5364 -2.8169 -2.1719 15 7 10.0318 -4.1609 -2.4989 16 6 10.9419 -4.3430 -3.5056 17 1 10.9712 -5.2787 -4.0444 18 6 11.8271 -3.3252 -3.8337 19 7 12.0387 -2.3392 -2.9881 20 14 12.7179 -3.3552 -5.4753 21 1 11.9545 -2.5563 -6.4674 22 1 14.0755 -2.7759 -5.3124 23 1 12.8318 -4.7572 -5.9512 24 6 9.5316 -5.3056 -1.7256 25 6 8.0002 -5.2952 -1.7638 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6959 -2.0073 -0.0005 30 1 3.7932 -0.1107 1.8704 31 1 3.7932 -1.8839 2.0251 32 1 5.2464 -1.0424 1.4354 33 1 6.1034 -2.0123 -0.3901 34 1 5.5947 -4.7742 -0.6895 35 1 5.6005 -4.0266 -2.3048 36 1 7.8518 -3.7558 -0.2638 37 1 7.6652 -3.0285 -3.2227 38 1 7.6227 -1.8699 -1.8714 39 1 9.8770 -2.5341 -1.1759 40 1 9.9116 -2.1010 -2.9033 41 1 12.6569 -1.6277 -3.2174 42 1 9.8720 -5.2259 -0.6932 43 1 9.9017 -6.2336 -2.1617 44 1 7.6148 -6.0822 -1.1156 45 1 7.6606 -5.4658 -2.7854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222308223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:56 Heat of formation + Delta-G solvation = -93.161586 kcal Electronic energy + Delta-G solvation = -24298.222826 eV Core-core repulsion = 20735.552297 eV Total energy + Delta-G solvation = -3562.670529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47991 -40.26579 -39.31981 -36.51599 -36.01799 -34.61023 -32.86353 -32.03087 -31.50608 -29.78136 -28.39528 -26.15192 -24.95551 -23.83104 -22.65236 -21.71275 -21.33903 -20.65743 -18.95438 -18.59520 -17.85587 -17.17378 -16.80075 -16.62106 -16.23474 -16.13127 -15.71904 -15.30202 -15.11195 -14.89123 -14.78188 -14.56479 -14.00710 -13.89763 -13.82695 -13.49842 -13.32062 -13.26247 -13.07224 -12.96559 -12.82569 -12.63892 -12.57915 -12.28103 -11.95849 -11.83657 -11.59967 -11.27122 -11.12897 -11.06853 -10.91861 -10.53545 -10.27722 -10.11323 -8.66819 -7.87694 -5.31928 1.44381 1.45369 1.47278 1.55800 1.58126 1.84500 2.43660 2.50895 3.26472 3.51957 3.71956 3.84623 3.89541 3.96433 4.02704 4.07361 4.10530 4.50674 4.54329 4.55792 4.61795 4.67515 4.69265 4.75005 4.75868 4.79930 4.93785 5.04994 5.08683 5.13984 5.17815 5.25085 5.30851 5.31391 5.37486 5.43282 5.56357 5.66879 5.80270 6.39747 6.41672 6.49075 7.06157 7.16202 7.18484 7.88792 8.38807 9.18233 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002753 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.070487 B =10167.258134 C =10655.533141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.594 6.594 4 N -0.709 5.709 5 C 0.123 3.877 6 H 0.107 0.893 7 C -0.152 4.152 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.710 5.710 11 C 0.136 3.864 12 C -0.079 4.079 13 C -0.122 4.122 14 C 0.175 3.825 15 N -0.613 5.613 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.140 3.860 25 C -0.115 4.115 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.417 0.583 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.001 0.999 40 H 0.048 0.952 41 H 0.249 0.751 42 H 0.017 0.983 43 H 0.051 0.949 44 H 0.086 0.914 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 0.374 9.416 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.475 6.475 4 N -0.364 5.364 5 C 0.014 3.986 6 H 0.124 0.876 7 C -0.211 4.211 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.362 5.362 11 C 0.013 3.987 12 C -0.098 4.098 13 C -0.161 4.161 14 C 0.050 3.950 15 N -0.336 5.336 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.193 1.193 24 C 0.015 3.985 25 C -0.154 4.154 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.255 0.745 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.250 0.750 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.019 0.981 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.394 0.596 9.113 23.262 hybrid contribution 1.193 0.174 -0.866 1.485 sum -20.201 0.771 8.247 21.833 Atomic orbital electron populations 1.21901 0.87844 1.06130 1.06452 1.21615 0.92380 0.82370 0.73882 1.90713 1.71973 1.32862 1.51958 1.45921 1.05586 1.10062 1.74781 1.20769 0.82812 0.95572 0.99419 0.87566 1.22091 1.02762 1.03337 0.92890 1.20748 0.82729 0.88357 0.78167 1.90674 1.55979 1.47805 1.50647 1.45938 1.06607 1.21244 1.62370 1.21352 0.93222 0.85846 0.98306 1.21173 0.92755 0.96030 0.99858 1.22051 0.96857 0.98281 0.98895 1.20596 0.90490 0.86908 0.97048 1.44348 1.48092 1.02953 1.38251 1.19513 1.09579 1.01197 1.08842 0.91832 1.25750 0.98470 0.99062 1.01368 1.70171 1.38423 1.14173 1.35204 0.85315 0.77277 0.77956 0.80304 1.21472 1.22160 1.19324 1.21058 0.93265 0.90344 0.93872 1.21853 0.95972 0.96383 1.01202 0.86740 0.88654 0.87958 0.74515 0.91398 0.91059 0.89374 0.74960 0.90610 0.92593 0.90202 0.93733 0.91163 0.98139 0.93352 0.94163 0.96489 0.93024 0.89550 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.30 71.24 0.73 -0.78 16 2 C 0.51 9.49 7.90 87.66 0.69 10.19 16 3 O -0.59 -16.43 16.76 -3.01 -0.05 -16.48 16 4 N -0.71 -12.25 4.95 -446.08 -2.21 -14.46 16 5 C 0.12 2.29 2.99 44.25 0.13 2.43 16 6 H 0.11 2.21 7.58 -2.39 -0.02 2.19 16 7 C -0.15 -2.25 9.38 71.98 0.68 -1.57 16 8 C 0.51 11.28 7.22 87.66 0.63 11.91 16 9 O -0.57 -15.86 15.84 -3.02 -0.05 -15.91 16 10 N -0.71 -14.46 5.16 -463.07 -2.39 -16.85 16 11 C 0.14 3.19 5.06 86.38 0.44 3.62 16 12 C -0.08 -2.16 2.19 -10.77 -0.02 -2.19 16 13 C -0.12 -4.12 5.25 30.67 0.16 -3.96 16 14 C 0.18 8.07 5.31 86.36 0.46 8.53 16 15 N -0.61 -30.01 2.99 -699.09 -2.09 -32.10 16 16 C -0.26 -14.28 9.58 84.04 0.81 -13.48 16 17 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 18 C -0.05 -2.85 4.90 84.87 0.42 -2.43 16 19 N -0.93 -54.90 11.22 21.65 0.24 -54.66 16 20 Si 0.96 44.96 29.59 68.60 2.03 46.99 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.49 6.51 86.36 0.56 6.05 16 25 C -0.11 -3.42 5.36 30.67 0.16 -3.26 16 26 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.42 6.17 7.79 -92.71 -0.72 5.45 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.06 7.55 -2.39 -0.02 1.04 16 33 H 0.41 7.03 7.06 -92.71 -0.65 6.38 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.05 2.59 6.06 -2.38 -0.01 2.57 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.05 2.01 7.94 -2.38 -0.02 1.99 16 44 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -72.61 362.97 0.94 -71.67 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.39 Total: 16.73 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 5.85 Total: 15.06 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -6.45 Total: -118.07 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.10 Total: -32.38 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.61 0.94 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222308223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.492 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds