Wall clock time and date at job start Tue Mar 31 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21276 * 119.99618 * 2 1 4 4 N 1.34771 * 120.00204 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00005 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47109 * 35.00132 * 5 4 2 7 7 C 1.52999 * 109.47231 * 274.99913 * 5 4 2 8 8 C 1.50703 * 109.47040 * 155.00127 * 5 4 2 9 9 O 1.21283 * 119.99733 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99862 * 180.02562 * 8 5 4 11 11 C 1.46504 * 120.00073 * 179.97438 * 10 8 5 12 12 C 1.53003 * 109.47379 * 179.97438 * 11 10 8 13 13 C 1.53040 * 109.45692 * 295.02749 * 12 11 10 14 14 C 1.53197 * 109.31015 * 178.60276 * 13 12 11 15 15 N 1.46921 * 108.76630 * 54.65353 * 14 13 12 16 16 C 1.36936 * 120.63239 * 126.36264 * 15 14 13 17 17 H 1.08007 * 119.99722 * 331.85885 * 16 15 14 18 18 C 1.38813 * 119.99963 * 151.85257 * 16 15 14 19 19 N 1.31613 * 120.00589 * 343.07955 * 18 16 15 20 20 Si 1.86801 * 119.99472 * 163.07427 * 18 16 15 21 21 H 1.48501 * 109.47250 * 60.00388 * 20 18 16 22 22 H 1.48501 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47436 * 300.00134 * 20 18 16 24 24 C 1.46927 * 118.73885 * 306.38165 * 15 14 13 25 25 C 1.53042 * 109.45987 * 174.97137 * 12 11 10 26 26 H 1.09005 * 109.47300 * 239.99390 * 1 2 3 27 27 H 1.09002 * 109.47420 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46921 * 119.99887 * 1 2 3 29 29 H 0.97002 * 119.99595 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.46946 * 59.99688 * 7 5 4 31 31 H 1.08999 * 109.46993 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.46819 * 300.00149 * 7 5 4 33 33 H 0.97001 * 120.00240 * 359.97438 * 10 8 5 34 34 H 1.09000 * 109.47028 * 299.99921 * 11 10 8 35 35 H 1.08999 * 109.47235 * 59.99296 * 11 10 8 36 36 H 1.08998 * 109.45601 * 54.99685 * 12 11 10 37 37 H 1.08998 * 109.49627 * 298.56316 * 13 12 11 38 38 H 1.08994 * 109.50042 * 58.66264 * 13 12 11 39 39 H 1.09000 * 109.59704 * 294.86354 * 14 13 12 40 40 H 1.08998 * 109.69987 * 174.50846 * 14 13 12 41 41 H 0.96997 * 120.00606 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.58663 * 293.82395 * 24 15 14 43 43 H 1.09001 * 109.70176 * 173.46185 * 24 15 14 44 44 H 1.08995 * 109.49908 * 301.33614 * 25 12 11 45 45 H 1.08997 * 109.49367 * 61.43438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1554 -1.0410 -1.4383 8 6 4.1485 -2.4549 0.5989 9 8 3.3605 -3.2903 0.9890 10 7 5.4736 -2.6779 0.7029 11 6 5.9622 -3.9296 1.2866 12 6 7.4922 -3.9296 1.2859 13 6 8.0014 -3.9292 -0.1573 14 6 9.5329 -3.8940 -0.1542 15 7 10.0298 -5.0112 0.6604 16 6 10.9374 -5.8991 0.1475 17 1 10.9645 -6.0903 -0.9152 18 6 11.8226 -6.5532 0.9933 19 7 12.0282 -6.0975 2.2108 20 14 12.7219 -8.0805 0.4035 21 1 13.5452 -7.7422 -0.7852 22 1 13.6016 -8.5866 1.4876 23 1 11.7336 -9.1274 0.0394 24 6 9.5339 -5.1580 2.0356 25 6 8.0024 -5.1788 2.0080 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 3.7918 -0.1096 -1.8722 31 1 5.2454 -1.0405 -1.4386 32 1 3.7918 -1.8827 -2.0277 33 1 6.1038 -2.0096 0.3912 34 1 5.5990 -4.0192 2.3104 35 1 5.5989 -4.7715 0.6973 36 1 7.8556 -3.0394 1.7994 37 1 7.6591 -4.8315 -0.6641 38 1 7.6185 -3.0515 -0.6779 39 1 9.8761 -2.9508 0.2710 40 1 9.9048 -3.9917 -1.1742 41 1 12.6465 -6.5547 2.8019 42 1 9.8772 -4.3179 2.6394 43 1 9.9043 -6.0901 2.4623 44 1 7.6203 -5.1905 3.0287 45 1 7.6601 -6.0691 1.4806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222308226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:58 Heat of formation + Delta-G solvation = -69.762654 kcal Electronic energy + Delta-G solvation = -24246.846928 eV Core-core repulsion = 20685.191052 eV Total energy + Delta-G solvation = -3561.655875 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60341 -39.35166 -37.88962 -35.33105 -35.02925 -33.05191 -31.81365 -30.75836 -29.78307 -29.15741 -26.97867 -24.83743 -23.71951 -22.27071 -21.19645 -20.85223 -20.45668 -19.16250 -18.05323 -17.01885 -16.79448 -16.20430 -15.81213 -15.37539 -15.23625 -14.79852 -14.24714 -14.05307 -13.93832 -13.59108 -13.47808 -13.30634 -13.08447 -12.91857 -12.67415 -12.46557 -12.39603 -12.32601 -12.00437 -11.83595 -11.38067 -11.01271 -10.73705 -10.55338 -10.30795 -10.26805 -10.25287 -10.12762 -9.92197 -9.60531 -9.53772 -9.42008 -9.13209 -8.48715 -6.69405 -5.81026 -3.23660 2.27847 2.40010 2.62716 3.23112 3.36919 3.42901 3.44059 4.34815 4.47874 4.52482 4.71465 4.81357 4.91635 5.02253 5.03829 5.16269 5.23911 5.33049 5.38239 5.40562 5.51907 5.56094 5.77773 5.80228 5.86579 5.97432 6.02490 6.08164 6.27863 6.30716 6.40377 6.55992 6.63969 6.71942 6.77236 6.94051 7.17261 7.29685 7.35629 7.63066 7.77186 7.87985 7.98122 8.43252 9.19417 9.82865 10.39440 11.27512 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043831 B = 0.002508 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.665655 B =11162.051259 C =11350.240387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.714 5.714 5 C 0.123 3.877 6 H 0.114 0.886 7 C -0.159 4.159 8 C 0.509 3.491 9 O -0.542 6.542 10 N -0.716 5.716 11 C 0.123 3.877 12 C -0.091 4.091 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.411 0.589 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 9.567 -4.330 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.368 5.368 5 C 0.014 3.986 6 H 0.132 0.868 7 C -0.218 4.218 8 C 0.293 3.707 9 O -0.420 6.420 10 N -0.368 5.368 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.166 4.166 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.046 3.954 25 C -0.172 4.172 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.248 0.752 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.491 9.631 -3.913 22.090 hybrid contribution 0.618 -0.926 -0.333 1.162 sum -18.874 8.705 -4.246 21.214 Atomic orbital electron populations 1.21906 0.91220 1.05591 1.04526 1.20847 0.90771 0.83134 0.75164 1.90728 1.70829 1.31360 1.49659 1.45835 1.05793 1.09779 1.75422 1.20778 0.82198 0.97026 0.98618 0.86841 1.22132 1.01932 1.03485 0.94244 1.20528 0.83020 0.88236 0.78877 1.90694 1.55316 1.46687 1.49294 1.46041 1.06396 1.21573 1.62753 1.21641 0.95061 0.85066 0.98237 1.21325 0.91433 1.00337 0.97866 1.22077 0.99236 1.00398 0.94913 1.20888 0.90674 0.91001 0.95591 1.44037 1.48351 1.27901 1.11212 1.19134 1.09669 1.16628 0.92879 0.91800 1.25045 0.97199 1.00385 0.97007 1.70011 1.37509 1.39381 1.07850 0.86373 0.79286 0.83442 0.77683 1.20885 1.21632 1.21030 1.20760 0.87001 1.01653 0.86018 1.22178 1.00965 0.95890 0.98208 0.89190 0.88832 0.89254 0.75237 0.90792 0.90694 0.91656 0.76178 0.91638 0.91415 0.91220 0.92149 0.93489 0.96588 0.92859 0.93557 0.96435 0.89398 0.93058 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.32 36.01 0.37 -0.56 16 2 C 0.51 4.88 7.90 -10.99 -0.09 4.79 16 3 O -0.55 -7.35 16.75 5.56 0.09 -7.25 16 4 N -0.71 -6.43 4.95 -54.93 -0.27 -6.71 16 5 C 0.12 1.17 2.98 -69.08 -0.21 0.96 16 6 H 0.11 1.13 7.58 -51.93 -0.39 0.73 16 7 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 8 C 0.51 5.90 7.22 -10.99 -0.08 5.82 16 9 O -0.54 -7.97 15.84 5.56 0.09 -7.88 16 10 N -0.72 -7.84 5.16 -60.29 -0.31 -8.15 16 11 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 12 C -0.09 -1.35 2.19 -90.58 -0.20 -1.54 16 13 C -0.13 -1.97 5.25 -26.61 -0.14 -2.11 16 14 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 15 N -0.59 -14.36 2.99 -172.32 -0.52 -14.88 16 16 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 17 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 20 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 25 C -0.13 -2.37 5.36 -26.61 -0.14 -2.51 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.41 3.34 7.79 -40.82 -0.32 3.02 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 3.63 7.07 -40.82 -0.29 3.34 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.59 7.15 -51.93 -0.37 0.21 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -32.80 362.95 -7.82 -40.62 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.53 Total: 2.34 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.43 Total: 5.26 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.48 Total: -54.98 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.18 Total: -15.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.80 -7.82 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222308226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.145 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds