Wall clock time and date at job start Tue Mar 31 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46913 * 1 3 3 C 1.46897 * 110.99677 * 2 1 4 4 C 1.53243 * 109.33590 * 187.25154 * 3 2 1 5 5 N 1.47074 * 108.52156 * 306.17160 * 4 3 2 6 6 C 1.34780 * 120.88181 * 231.18086 * 5 4 3 7 7 O 1.21279 * 119.99556 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99971 * 179.97438 * 6 5 4 9 9 O 1.42908 * 109.47081 * 180.02562 * 8 6 5 10 10 C 1.42900 * 113.99997 * 180.02562 * 9 8 6 11 11 C 1.53514 * 114.16934 * 150.00256 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.81254 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.47082 * 118.23926 * 51.45896 * 5 4 3 24 24 C 1.46893 * 110.99869 * 124.30521 * 2 1 3 25 25 H 1.09005 * 109.46858 * 59.99759 * 1 2 3 26 26 H 1.08996 * 109.46728 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46805 * 299.99983 * 1 2 3 28 28 H 1.09005 * 109.49116 * 67.29718 * 3 2 1 29 29 H 1.09002 * 109.52070 * 307.22704 * 3 2 1 30 30 H 1.09004 * 109.62489 * 186.46160 * 4 3 2 31 31 H 1.09005 * 109.78609 * 65.98103 * 4 3 2 32 32 H 1.09003 * 109.47110 * 60.01020 * 8 6 5 33 33 H 1.08996 * 109.47699 * 300.00406 * 8 6 5 34 34 H 1.09004 * 113.25466 * 17.04971 * 10 9 8 35 35 H 1.09000 * 113.47331 * 333.04932 * 11 10 9 36 36 H 1.08997 * 113.47627 * 202.58057 * 11 10 9 37 37 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 38 38 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 41 41 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 42 42 H 1.09007 * 109.62410 * 68.24717 * 23 5 4 43 43 H 1.08992 * 109.63211 * 188.83026 * 23 5 4 44 44 H 1.09007 * 109.49378 * 292.70641 * 24 2 1 45 45 H 1.09001 * 109.49700 * 52.75349 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3312 -0.1825 5 7 4.0870 0.4460 0.8442 6 6 5.1056 0.8582 1.6245 7 8 5.5637 1.9725 1.4852 8 6 5.6747 -0.0650 2.6708 9 8 6.7363 0.5958 3.3626 10 6 7.3484 -0.1974 4.3815 11 6 8.8314 0.1204 4.6195 12 7 8.4007 1.1535 5.5798 13 6 9.2558 1.1511 6.7743 14 6 8.9488 2.3639 7.6144 15 1 8.1942 3.0666 7.2929 16 6 9.6320 2.5772 8.7929 17 7 10.5512 1.7218 9.1841 18 14 9.2519 4.0810 9.8338 19 1 10.1242 5.2070 9.4140 20 1 7.8285 4.4627 9.6509 21 1 9.5007 3.7686 11.2641 22 6 7.1791 0.3577 5.8027 23 6 3.5205 -0.9032 0.9927 24 6 1.9955 -0.7729 1.1328 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7555 1.8531 0.9480 29 1 1.5457 1.9342 -0.8180 30 1 3.9256 2.3351 -0.0689 31 1 3.7592 0.9469 -1.1733 32 1 6.0584 -0.9654 2.1910 33 1 4.8928 -0.3363 3.3801 34 1 7.1291 -1.2611 4.2888 35 1 9.3347 0.5261 3.7419 36 1 9.3823 -0.6990 5.0811 37 1 10.3028 1.1742 6.4717 38 1 9.0655 0.2488 7.3555 39 1 11.0321 1.8721 10.0130 40 1 7.2894 -0.3983 6.5801 41 1 6.2824 0.9646 5.9280 42 1 3.7607 -1.5000 0.1127 43 1 3.9322 -1.3772 1.8836 44 1 1.7556 -0.2614 2.0650 45 1 1.5453 -1.7656 1.1365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222543974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:54 Heat of formation + Delta-G solvation = -43.866160 kcal Electronic energy + Delta-G solvation = -24071.457792 eV Core-core repulsion = 20510.924873 eV Total energy + Delta-G solvation = -3560.532919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42184 -40.89675 -39.08726 -37.53915 -35.67849 -34.99740 -32.45116 -31.22099 -30.08897 -28.40599 -27.10892 -26.69267 -25.25059 -24.62919 -23.61966 -22.30787 -20.92594 -20.09264 -18.61318 -18.29692 -17.89802 -17.19399 -16.92140 -16.85303 -16.20705 -16.07545 -16.06163 -15.80456 -15.63293 -15.21059 -15.00706 -14.93144 -14.21941 -14.01819 -13.74868 -13.62488 -13.48752 -13.07167 -12.97739 -12.83943 -12.74525 -12.44975 -12.32736 -12.30938 -12.29434 -12.09647 -11.99442 -11.48328 -11.27518 -10.82309 -10.64310 -10.51504 -9.89510 -9.51984 -9.32940 -8.25166 -6.35046 1.36337 1.38805 1.49385 1.50267 1.61155 2.37495 2.66566 2.92093 3.06180 3.37459 3.43017 3.62658 3.86454 3.93054 3.99613 4.08697 4.13782 4.22893 4.25865 4.34171 4.42578 4.49580 4.52370 4.63124 4.65129 4.67120 4.70227 4.72746 4.78194 4.83754 4.86922 4.99837 5.03437 5.03963 5.05634 5.40286 5.57637 5.81520 5.93219 5.98758 6.07856 6.17137 6.35555 6.51019 6.79151 7.09195 7.34287 8.85711 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002532 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.185126 B =11054.828832 C =11415.768847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.509 3.491 7 O -0.577 6.577 8 C 0.040 3.960 9 O -0.366 6.366 10 C 0.084 3.916 11 C -0.011 4.011 12 N -0.496 5.496 13 C 0.173 3.827 14 C -0.529 4.529 15 H 0.049 0.951 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.269 1.269 21 H -0.273 1.273 22 C -0.013 4.013 23 C 0.105 3.895 24 C 0.037 3.963 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.087 0.913 37 H -0.001 1.001 38 H -0.011 1.011 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.030 0.970 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.815 -12.863 -19.923 32.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.081 4.081 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.298 3.702 7 O -0.456 6.456 8 C -0.039 4.039 9 O -0.284 6.284 10 C 0.026 3.974 11 C -0.140 4.140 12 N -0.218 5.218 13 C 0.046 3.954 14 C -0.568 4.568 15 H 0.067 0.933 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.143 4.143 23 C -0.017 4.017 24 C -0.092 4.092 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.017 0.983 38 H 0.007 0.993 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.049 0.951 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.253 -11.625 -20.494 31.731 hybrid contribution 0.070 0.546 1.921 1.998 sum -21.183 -11.080 -18.573 30.273 Atomic orbital electron populations 1.22423 0.85683 1.03212 1.00963 1.61994 1.09078 1.12948 1.43391 1.22427 0.94173 0.90253 1.01243 1.21707 0.92630 0.95036 0.91430 1.48232 1.33829 1.16965 1.35740 1.20871 0.79699 0.87515 0.82131 1.90734 1.61011 1.23329 1.70482 1.22590 0.91967 0.95029 0.94336 1.88100 1.49428 1.41011 1.49829 1.23183 0.92557 0.95414 0.86243 1.24125 0.96867 0.95419 0.97564 1.68976 1.05322 1.36587 1.10958 1.19952 0.92042 0.95519 0.87860 1.21413 1.20952 1.08681 1.05706 0.93256 1.25904 0.94729 1.00042 0.98835 1.70058 1.25319 1.37899 1.23845 0.85386 0.78732 0.78880 0.77634 1.19944 1.19372 1.19844 1.24304 0.95784 0.96713 0.97471 1.22309 0.92775 0.81730 1.04855 1.22683 0.94947 1.00145 0.91380 0.90559 0.89759 0.96015 0.95811 0.87942 0.90960 0.89454 0.86238 0.87481 0.84984 0.90559 0.89520 0.98297 0.99294 0.92471 0.90236 0.91403 0.88595 0.86947 0.95150 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.58 127.69 1.22 1.43 16 2 N -0.55 -6.23 4.88 -920.50 -4.49 -10.72 16 3 C 0.05 0.67 5.62 86.39 0.49 1.16 16 4 C 0.11 2.05 6.60 86.35 0.57 2.62 16 5 N -0.61 -11.29 3.00 -817.05 -2.45 -13.74 16 6 C 0.51 13.56 7.78 87.65 0.68 14.24 16 7 O -0.58 -22.52 15.95 16.01 0.26 -22.27 16 8 C 0.04 0.83 4.62 71.23 0.33 1.16 16 9 O -0.37 -12.18 9.93 -129.94 -1.29 -13.47 16 10 C 0.08 2.50 4.65 30.94 0.14 2.65 16 11 C -0.01 -0.39 7.52 83.58 0.63 0.24 16 12 N -0.50 -23.90 6.32 -932.85 -5.89 -29.79 16 13 C 0.17 9.78 4.57 85.55 0.39 10.17 16 14 C -0.53 -32.56 9.39 25.60 0.24 -32.32 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 18 Si 0.97 46.70 29.54 68.60 2.03 48.72 16 19 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.01 -0.51 7.56 83.58 0.63 0.12 16 23 C 0.10 0.98 6.53 86.50 0.57 1.55 16 24 C 0.04 0.34 5.64 86.54 0.49 0.82 16 25 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 27 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.10 1.12 8.11 -2.39 -0.02 1.10 16 30 H 0.07 1.67 7.06 -2.38 -0.02 1.65 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.12 1.50 7.99 -2.39 -0.02 1.48 16 33 H 0.11 1.60 7.67 -2.39 -0.02 1.59 16 34 H 0.13 2.43 7.88 -2.38 -0.02 2.41 16 35 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.09 2.93 7.91 -2.39 -0.02 2.91 16 37 H 0.00 -0.07 8.08 -2.38 -0.02 -0.08 16 38 H -0.01 -0.61 7.30 -2.39 -0.02 -0.63 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 40 H 0.08 2.89 7.42 -2.39 -0.02 2.88 16 41 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.11 0.54 6.02 -2.39 -0.01 0.52 16 44 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 45 H 0.11 0.51 8.06 -2.39 -0.02 0.49 16 Total: -1.00 -84.77 362.58 -3.77 -88.53 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.95 Total: 5.45 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.84 Total: 4.47 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -12.55 Total: -111.44 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.04 Total: -35.74 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -84.77 -3.77 -88.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222543974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.667 kcal (2) G-P(sol) polarization free energy of solvation -84.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds