Wall clock time and date at job start Tue Mar 31 2020 03:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47346 * 2 1 4 4 C 1.34772 * 120.00261 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99658 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00130 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47096 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46783 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00644 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99574 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00448 * 6.55941 * 10 8 7 12 12 C 1.46510 * 119.99758 * 186.56603 * 10 8 7 13 13 C 1.52997 * 109.47405 * 103.06746 * 12 10 8 14 14 H 1.09001 * 112.77749 * 73.06785 * 13 12 10 15 15 C 1.53753 * 113.55284 * 203.92507 * 13 12 10 16 16 C 1.53497 * 83.25786 * 140.98524 * 15 13 12 17 17 N 1.47066 * 113.46640 * 302.28845 * 13 12 10 18 18 C 1.36941 * 136.05866 * 38.13690 * 17 13 12 19 19 H 1.07995 * 119.99778 * 38.33804 * 18 17 13 20 20 C 1.38811 * 119.99895 * 218.06912 * 18 17 13 21 21 N 1.31616 * 119.99953 * 213.05926 * 20 18 17 22 22 Si 1.86806 * 119.99941 * 33.06281 * 20 18 17 23 23 H 1.48499 * 109.46982 * 92.00984 * 22 20 18 24 24 H 1.48500 * 109.46843 * 212.01221 * 22 20 18 25 25 H 1.48502 * 109.47200 * 332.01060 * 22 20 18 26 26 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47151 * 300.00332 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00140 * 1 2 3 29 29 H 1.08993 * 109.47233 * 239.99347 * 2 1 3 30 30 H 1.09010 * 109.46713 * 119.99412 * 2 1 3 31 31 H 0.97000 * 119.99604 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46885 * 60.00195 * 6 4 3 33 33 H 1.09000 * 109.47445 * 300.00307 * 6 4 3 34 34 H 1.08997 * 109.46703 * 60.00487 * 7 6 4 35 35 H 1.09000 * 109.46986 * 300.00173 * 7 6 4 36 36 H 1.09005 * 109.47207 * 270.00687 * 11 10 8 37 37 H 1.09003 * 109.46702 * 30.00113 * 11 10 8 38 38 H 1.09001 * 109.47652 * 150.00338 * 11 10 8 39 39 H 1.08998 * 109.46937 * 343.06264 * 12 10 8 40 40 H 1.09001 * 109.46791 * 223.06718 * 12 10 8 41 41 H 1.09001 * 114.39295 * 27.42431 * 15 13 12 42 42 H 1.08993 * 114.26787 * 254.54198 * 15 13 12 43 43 H 1.08994 * 113.47008 * 218.98336 * 16 15 13 44 44 H 1.08996 * 113.51786 * 88.55440 * 16 15 13 45 45 H 0.97001 * 119.99522 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0015 6 6 3.8458 3.0483 -0.0001 7 6 5.3758 3.0482 0.0014 8 6 5.8781 4.4690 0.0014 9 8 5.0900 5.3909 -0.0001 10 7 7.2032 4.7153 0.0020 11 6 8.1537 3.6100 -0.1422 12 6 7.6930 6.0884 0.1472 13 6 8.1994 6.3011 1.5751 14 1 9.1476 5.7984 1.7658 15 6 8.1869 7.7732 2.0187 16 6 7.7268 7.1779 3.3566 17 7 7.1806 6.0392 2.6029 18 6 6.1715 5.1311 2.7822 19 1 6.3130 4.1016 2.4881 20 6 4.9687 5.5325 3.3471 21 7 4.2845 4.6980 4.1004 22 14 4.3213 7.2573 3.0378 23 1 3.4261 7.2449 1.8531 24 1 3.5625 7.7217 4.2269 25 1 5.4607 8.1763 2.7878 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3880 2.1185 -0.0004 32 1 3.4820 3.5626 0.8895 33 1 3.4829 3.5616 -0.8905 34 1 5.7398 2.5338 -0.8880 35 1 5.7383 2.5350 0.8920 36 1 8.4103 3.2205 0.8430 37 1 7.7020 2.8180 -0.7396 38 1 9.0560 3.9689 -0.6374 39 1 6.8820 6.7871 -0.0586 40 1 8.5075 6.2599 -0.5565 41 1 7.4361 8.3869 1.5209 42 1 9.1715 8.2394 2.0519 43 1 6.9633 7.7734 3.8571 44 1 8.5497 6.9063 4.0177 45 1 3.4442 4.9787 4.4954 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231207457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:08 Heat of formation + Delta-G solvation = -10.528223 kcal Electronic energy + Delta-G solvation = -25672.403953 eV Core-core repulsion = 22113.316675 eV Total energy + Delta-G solvation = -3559.087278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70986 -39.10491 -37.81223 -35.19847 -34.64773 -32.50698 -32.18062 -30.45697 -28.79918 -28.02436 -26.13201 -24.94325 -23.20671 -22.78505 -21.88039 -20.17405 -18.98578 -18.36920 -17.20143 -16.95388 -15.99749 -15.84836 -15.54537 -15.38993 -15.26090 -14.70550 -14.39614 -13.70084 -13.46258 -13.24852 -13.10454 -12.71526 -12.69452 -12.40150 -12.28005 -12.03996 -11.95841 -11.91071 -11.61975 -11.49027 -11.33356 -11.04967 -10.87483 -10.71634 -10.52638 -10.31284 -10.03204 -9.93059 -9.56484 -9.35567 -8.95204 -8.87430 -8.29050 -7.79423 -6.64900 -5.97784 -3.24671 2.94028 3.29350 3.47298 3.62326 3.66496 3.74314 3.85507 4.71671 4.85627 4.94858 5.00351 5.05386 5.23462 5.28930 5.38131 5.44392 5.45829 5.57244 5.61972 5.71374 5.76083 5.83845 5.84185 5.95386 5.96394 5.99111 6.09205 6.16140 6.27344 6.33483 6.43802 6.48682 6.51283 6.59899 6.64050 6.76359 7.17381 7.25264 7.64387 7.67218 8.16132 8.37571 8.45501 8.81308 9.10803 9.76289 10.62866 11.18582 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.005172 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.073641 B = 5412.188496 C = 6427.031964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.736 5.736 4 C 0.519 3.481 5 O -0.547 6.547 6 C -0.123 4.123 7 C -0.114 4.114 8 C 0.539 3.461 9 O -0.528 6.528 10 N -0.610 5.610 11 C 0.086 3.914 12 C 0.120 3.880 13 C 0.115 3.885 14 H 0.048 0.952 15 C -0.156 4.156 16 C 0.107 3.893 17 N -0.600 5.600 18 C -0.222 4.222 19 H 0.069 0.931 20 C 0.057 3.943 21 N -0.886 5.886 22 Si 0.860 3.140 23 H -0.282 1.282 24 H -0.308 1.308 25 H -0.262 1.262 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.401 0.599 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.034 0.966 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -3.945 -10.463 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.390 5.390 4 C 0.307 3.693 5 O -0.424 6.424 6 C -0.163 4.163 7 C -0.154 4.154 8 C 0.328 3.672 9 O -0.404 6.404 10 N -0.344 5.344 11 C -0.058 4.058 12 C -0.004 4.004 13 C 0.008 3.992 14 H 0.065 0.935 15 C -0.195 4.195 16 C -0.019 4.019 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.087 0.913 20 C -0.146 4.146 21 N -0.525 5.525 22 Si 0.689 3.311 23 H -0.209 1.209 24 H -0.236 1.236 25 H -0.187 1.187 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.157 -4.373 -10.338 11.226 hybrid contribution -0.686 1.163 0.143 1.358 sum -0.843 -3.209 -10.195 10.722 Atomic orbital electron populations 1.22004 0.94704 1.02937 1.02585 1.21243 0.94006 0.83542 1.02162 1.46066 1.07522 1.08659 1.76730 1.20888 0.81840 0.92009 0.74572 1.90658 1.55322 1.46845 1.49574 1.21355 0.96482 0.92543 1.05937 1.21287 0.94777 0.94893 1.04462 1.20040 0.81730 0.90813 0.74617 1.90626 1.54544 1.46416 1.48795 1.47372 1.05732 1.07236 1.74020 1.21633 0.92950 0.89866 1.01328 1.21696 0.98743 0.83618 0.96359 1.22748 0.93789 0.92316 0.90377 0.93454 1.23584 0.99857 0.96429 0.99623 1.22638 0.95689 0.89938 0.93588 1.45485 1.33149 1.37239 1.16866 1.17931 0.89117 0.87978 1.39840 0.91325 1.25334 0.95717 0.96877 0.96626 1.70053 1.16119 1.37407 1.28951 0.87049 0.79579 0.87542 0.76975 1.20876 1.23609 1.18671 0.91035 0.91826 0.92097 0.91841 0.91600 0.76438 0.87018 0.88902 0.89865 0.88137 0.92899 0.91678 0.92017 0.89607 0.92664 0.90313 0.92400 0.93817 0.94814 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.03 37.16 0.37 -0.97 16 2 C 0.11 1.30 6.39 -4.04 -0.03 1.28 16 3 N -0.74 -9.74 5.56 -60.29 -0.33 -10.07 16 4 C 0.52 8.69 7.83 -10.99 -0.09 8.61 16 5 O -0.55 -10.70 15.98 5.55 0.09 -10.61 16 6 C -0.12 -2.14 4.99 -27.88 -0.14 -2.28 16 7 C -0.11 -2.07 3.65 -27.88 -0.10 -2.18 16 8 C 0.54 11.06 4.90 -10.99 -0.05 11.00 16 9 O -0.53 -12.66 14.92 5.56 0.08 -12.57 16 10 N -0.61 -11.14 2.43 -181.57 -0.44 -11.58 16 11 C 0.09 1.23 10.13 59.84 0.61 1.83 16 12 C 0.12 2.16 5.70 -4.04 -0.02 2.14 16 13 C 0.11 2.22 4.28 -72.27 -0.31 1.91 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.83 7.96 -26.08 -0.21 -3.04 16 16 C 0.11 2.30 7.57 -8.51 -0.06 2.24 16 17 N -0.60 -14.52 2.92 -176.85 -0.52 -15.04 16 18 C -0.22 -6.14 7.84 -15.06 -0.12 -6.26 16 19 H 0.07 2.04 6.89 -52.49 -0.36 1.67 16 20 C 0.06 1.65 5.46 -17.43 -0.10 1.55 16 21 N -0.89 -26.79 13.97 55.49 0.78 -26.01 16 22 Si 0.86 23.19 27.44 -169.99 -4.66 18.52 16 23 H -0.28 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 25 H -0.26 -6.78 5.29 56.52 0.30 -6.48 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.40 4.42 8.47 -40.82 -0.35 4.07 16 32 H 0.11 2.27 8.10 -51.93 -0.42 1.85 16 33 H 0.09 1.44 8.10 -51.93 -0.42 1.02 16 34 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 35 H 0.10 2.03 7.77 -51.93 -0.40 1.63 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.82 6.49 -51.93 -0.34 0.49 16 38 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 39 H 0.09 1.77 6.84 -51.93 -0.36 1.41 16 40 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.08 1.50 7.83 -51.93 -0.41 1.09 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 1.01 5.80 -51.93 -0.30 0.71 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -35.36 360.63 -7.43 -42.79 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.60 Total: 3.30 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -0.24 Total: 15.85 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.52 Total: -62.70 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.66 Total: 18.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.36 -7.43 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231207457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.258 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds