Wall clock time and date at job start Tue Mar 31 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46754 * 2 1 4 4 C 1.46501 * 119.99941 * 269.99617 * 3 2 1 5 5 C 1.50693 * 109.47545 * 270.00631 * 4 3 2 6 6 H 1.08002 * 119.99807 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00475 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99665 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00368 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46958 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47025 * 119.99658 * 9 7 5 12 12 H 1.48499 * 109.47419 * 239.99870 * 9 7 5 13 13 C 1.34770 * 120.00110 * 89.99985 * 3 2 1 14 14 O 1.21278 * 119.99942 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99932 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.46766 * 179.97438 * 15 13 3 17 17 C 1.48538 * 110.99906 * 287.39209 * 16 15 13 18 18 C 1.54934 * 103.22476 * 200.28368 * 17 16 15 19 19 C 1.54592 * 102.92204 * 37.41689 * 18 17 16 20 20 H 1.09000 * 110.39173 * 97.00667 * 19 18 17 21 21 N 1.46507 * 110.30721 * 219.12811 * 19 18 17 22 22 C 1.34779 * 119.99613 * 270.71608 * 21 19 18 23 23 C 1.50703 * 119.99860 * 180.02562 * 22 21 19 24 24 O 1.21280 * 120.00451 * 0.02562 * 22 21 19 25 25 C 1.47901 * 110.99660 * 170.00374 * 16 15 13 26 26 H 1.08992 * 109.47328 * 299.99937 * 1 2 3 27 27 H 1.09000 * 109.47135 * 60.00326 * 1 2 3 28 28 H 1.09006 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47036 * 240.00366 * 2 1 3 30 30 H 1.09000 * 109.47135 * 119.99673 * 2 1 3 31 31 H 1.09003 * 109.46888 * 30.00600 * 4 3 2 32 32 H 1.09001 * 109.46904 * 149.99911 * 4 3 2 33 33 H 0.97002 * 119.99595 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46913 * 60.00249 * 15 13 3 35 35 H 1.08995 * 109.46936 * 299.99988 * 15 13 3 36 36 H 1.08998 * 110.67155 * 318.71806 * 17 16 15 37 37 H 1.09000 * 110.66307 * 81.68107 * 17 16 15 38 38 H 1.09001 * 110.72467 * 279.05804 * 18 17 16 39 39 H 1.09001 * 110.72427 * 155.77994 * 18 17 16 40 40 H 0.96996 * 119.99995 * 90.71952 * 21 19 18 41 41 H 1.09002 * 109.47152 * 269.99864 * 23 22 21 42 42 H 1.09001 * 109.46980 * 149.99964 * 23 22 21 43 43 H 1.09004 * 109.47113 * 29.99945 * 23 22 21 44 44 H 1.09001 * 109.92048 * 26.48532 * 25 16 15 45 45 H 1.09008 * 109.91305 * 265.19690 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3492 3.1266 -3.6176 9 14 5.9137 2.0976 -3.4164 10 1 6.6014 1.2424 -2.4159 11 1 5.9216 1.4190 -4.7373 12 1 6.6210 3.3989 -3.5242 13 6 2.2428 2.0166 1.1671 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3100 2.2063 3.5888 17 6 3.7781 2.3873 3.7240 18 6 3.9413 2.8829 5.1828 19 6 2.8728 2.0674 5.9466 20 1 3.3247 1.1919 6.4127 21 7 2.2232 2.9033 6.9593 22 6 2.7373 2.9770 8.2030 23 6 2.0688 3.8363 9.2450 24 8 3.7380 2.3518 8.4837 25 6 1.8539 1.6368 4.8753 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6755 3.5177 -4.4432 34 1 2.6211 0.4188 2.5302 35 1 0.9431 1.0126 2.5298 36 1 4.2976 1.4400 3.5792 37 1 4.1401 3.1349 3.0182 38 1 3.7344 3.9508 5.2528 39 1 4.9397 2.6571 5.5575 40 1 1.4231 3.4035 6.7348 41 1 2.4871 4.8422 9.2094 42 1 2.2378 3.4073 10.2327 43 1 0.9979 3.8809 9.0467 44 1 1.8217 0.5492 4.8095 45 1 0.8665 2.0258 5.1243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266299379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:21 Heat of formation + Delta-G solvation = -63.587254 kcal Electronic energy + Delta-G solvation = -24525.526733 eV Core-core repulsion = 20964.138643 eV Total energy + Delta-G solvation = -3561.388090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24115 -39.27017 -37.98004 -35.25566 -34.48819 -32.82457 -31.62703 -30.09469 -29.93716 -28.46675 -27.41349 -25.60545 -23.03599 -22.52713 -21.48164 -21.08026 -20.67828 -18.36441 -17.22058 -16.74542 -16.51567 -16.26913 -15.96804 -15.45756 -14.98588 -14.77895 -14.50027 -14.08834 -13.78253 -13.64873 -13.36078 -13.13147 -12.86898 -12.73666 -12.56116 -12.33565 -12.13868 -11.97551 -11.82994 -11.75757 -11.51008 -11.26037 -11.07966 -10.92690 -10.86613 -10.68637 -10.53541 -10.11634 -10.10510 -9.60399 -9.31391 -8.89539 -8.43281 -8.29387 -7.62792 -6.03875 -4.08429 2.40403 2.96951 3.29526 3.37016 3.40051 3.48076 3.66595 4.19564 4.38541 4.46090 4.59941 4.66966 4.90732 4.93600 5.08216 5.10777 5.21758 5.23548 5.30033 5.33503 5.37229 5.46411 5.49336 5.52130 5.63231 5.65868 5.78625 5.86171 6.01289 6.03147 6.22194 6.24266 6.32333 6.47073 6.84363 6.87617 7.13459 7.27824 7.47246 7.58217 7.93293 7.99087 8.24837 8.46329 8.92200 9.16138 9.56921 11.04157 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.003179 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.646274 B = 8807.050149 C = 9609.915703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.027 3.973 16 N -0.494 5.494 17 C 0.038 3.962 18 C -0.131 4.131 19 C 0.134 3.866 20 H 0.095 0.905 21 N -0.720 5.720 22 C 0.510 3.490 23 C -0.173 4.173 24 O -0.550 6.550 25 C 0.029 3.971 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -4.408 19.904 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.105 4.105 16 N -0.219 5.219 17 C -0.090 4.090 18 C -0.170 4.170 19 C 0.028 3.972 20 H 0.113 0.887 21 N -0.373 5.373 22 C 0.297 3.703 23 C -0.232 4.232 24 O -0.428 6.428 25 C -0.099 4.099 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.624 -3.648 19.800 21.195 hybrid contribution 0.854 -0.810 -0.507 1.282 sum -5.770 -4.458 19.293 20.625 Atomic orbital electron populations 1.22224 0.96835 1.01321 1.02356 1.21397 0.93484 0.84386 1.02503 1.48258 1.64245 1.13155 1.07703 1.19244 0.96157 0.93659 0.78101 1.21466 0.96949 1.31709 1.06160 0.92545 1.24936 0.97799 0.94968 0.96439 1.69947 1.35554 1.33522 1.14365 0.86462 0.84722 0.78051 0.78292 1.19850 1.20993 1.20879 1.20041 0.78983 0.87083 0.84588 1.90657 1.44709 1.17663 1.86832 1.22299 1.02368 0.94378 0.91421 1.64540 1.13530 1.42986 1.00811 1.23331 0.87641 1.01159 0.96871 1.22918 0.98764 1.00942 0.94419 1.21832 0.93172 0.94174 0.87977 0.88710 1.46214 1.31130 1.48974 1.10946 1.20840 0.84479 0.81903 0.83104 1.21886 1.01672 1.00967 0.98710 1.90724 1.25716 1.45659 1.80669 1.23141 0.98952 0.98339 0.89516 0.93103 0.91985 0.92254 0.89989 0.92048 0.95110 0.93895 0.92800 0.92220 0.88588 0.93820 0.87954 0.90168 0.90599 0.76129 0.88802 0.88985 0.90165 0.92710 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.46 2.46 -175.06 -0.43 -12.89 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 5 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 13 C 0.51 10.36 7.50 -10.99 -0.08 10.28 16 14 O -0.52 -13.00 14.64 5.56 0.08 -12.92 16 15 C 0.03 0.39 3.75 -4.97 -0.02 0.37 16 16 N -0.49 -6.98 4.91 -231.89 -1.14 -8.12 16 17 C 0.04 0.55 5.94 -1.90 -0.01 0.53 16 18 C -0.13 -1.60 6.78 -24.87 -0.17 -1.77 16 19 C 0.13 1.41 3.34 -66.58 -0.22 1.19 16 20 H 0.09 1.09 7.56 -51.93 -0.39 0.69 16 21 N -0.72 -6.26 5.06 -52.49 -0.27 -6.53 16 22 C 0.51 5.05 7.94 -10.98 -0.09 4.96 16 23 C -0.17 -0.97 10.30 36.01 0.37 -0.60 16 24 O -0.55 -7.99 16.75 5.56 0.09 -7.89 16 25 C 0.03 0.30 6.43 -2.76 -0.02 0.28 16 26 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 0.79 7.09 -51.93 -0.37 0.42 16 35 H 0.10 1.19 7.12 -51.93 -0.37 0.82 16 36 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 37 H 0.10 1.82 7.10 -51.93 -0.37 1.45 16 38 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 2.55 8.35 -40.82 -0.34 2.21 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.05 0.50 7.77 -51.93 -0.40 0.10 16 45 H 0.08 0.75 7.65 -51.92 -0.40 0.35 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -35.61 366.82 -8.22 -43.83 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.48 Total: -0.01 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.33 Total: 8.00 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -1.10 Total: -53.41 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.82 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.61 -8.22 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266299379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.755 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds