Wall clock time and date at job start Tue Mar 31 2020 03:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47128 * 2 1 4 4 C 1.46502 * 119.99862 * 269.99829 * 3 2 1 5 5 C 1.50693 * 109.47345 * 270.00130 * 4 3 2 6 6 H 1.08004 * 120.00155 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00316 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99704 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46955 * 90.00315 * 9 7 5 11 11 H 1.48503 * 109.46989 * 209.99873 * 9 7 5 12 12 H 1.48497 * 109.47466 * 329.99648 * 9 7 5 13 13 C 1.34768 * 120.00090 * 90.00103 * 3 2 1 14 14 O 1.21276 * 120.00209 * 180.02562 * 13 3 2 15 15 C 1.50708 * 120.00003 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.46910 * 186.14581 * 15 13 3 17 17 C 1.47479 * 111.00493 * 65.63349 * 16 15 13 18 18 C 1.53512 * 87.93281 * 138.70128 * 17 16 15 19 19 C 1.47479 * 110.99899 * 161.60949 * 16 15 13 20 20 H 1.09000 * 113.47705 * 336.05509 * 19 16 15 21 21 C 1.52998 * 113.48154 * 106.46596 * 19 16 15 22 22 N 1.46496 * 109.46801 * 305.00397 * 21 19 16 23 23 C 1.34784 * 119.99766 * 180.02562 * 22 21 19 24 24 C 1.50699 * 119.99855 * 179.97438 * 23 22 21 25 25 O 1.21279 * 120.00014 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47082 * 299.99893 * 1 2 3 27 27 H 1.08998 * 109.47335 * 59.99958 * 1 2 3 28 28 H 1.08995 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47082 * 240.00106 * 2 1 3 30 30 H 1.08998 * 109.47335 * 120.00042 * 2 1 3 31 31 H 1.09004 * 109.46920 * 29.99889 * 4 3 2 32 32 H 1.09003 * 109.46642 * 149.99563 * 4 3 2 33 33 H 0.96994 * 120.00483 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47491 * 66.14092 * 15 13 3 35 35 H 1.09003 * 109.46649 * 306.14301 * 15 13 3 36 36 H 1.08995 * 113.47894 * 253.46981 * 17 16 15 37 37 H 1.09001 * 113.47328 * 23.94142 * 17 16 15 38 38 H 1.09000 * 114.17011 * 87.62574 * 18 17 16 39 39 H 1.09001 * 114.17186 * 220.33206 * 18 17 16 40 40 H 1.09005 * 109.47161 * 64.99830 * 21 19 16 41 41 H 1.08999 * 109.47543 * 184.99764 * 21 19 16 42 42 H 0.96995 * 120.00486 * 359.97438 * 22 21 19 43 43 H 1.09003 * 109.47268 * 89.99402 * 24 23 22 44 44 H 1.09006 * 109.46946 * 209.99621 * 24 23 22 45 45 H 1.08995 * 109.47078 * 329.99500 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6172 9 14 5.9137 2.0975 -3.4164 10 1 5.9775 0.8769 -4.2596 11 1 6.3927 3.2652 -4.1989 12 1 6.7736 1.9177 -2.2192 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1601 1.1671 15 6 1.9924 1.3059 2.4723 16 7 2.1684 2.2489 3.5848 17 6 1.1414 3.3068 3.5487 18 6 1.0298 3.1733 5.0739 19 6 1.5253 1.7441 4.8123 20 1 0.7208 1.0340 4.6205 21 6 2.5208 1.2413 5.8596 22 7 3.3909 0.2273 5.2590 23 6 4.3514 -0.3608 5.9996 24 6 5.2460 -1.4044 5.3819 25 8 4.4956 -0.0500 7.1630 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5817 1.6876 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6756 3.5178 -4.4430 34 1 2.6982 0.4823 2.5790 35 1 0.9745 0.9160 2.4840 36 1 1.5255 4.2739 3.2244 37 1 0.2346 3.0136 3.0197 38 1 1.7326 3.7947 5.6289 39 1 0.0095 3.2295 5.4534 40 1 3.1263 2.0751 6.2151 41 1 1.9774 0.8040 6.6971 42 1 3.2754 -0.0216 4.3287 43 1 6.1254 -0.9223 4.9547 44 1 5.5572 -2.1153 6.1474 45 1 4.7026 -1.9303 4.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269188417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:14 Heat of formation + Delta-G solvation = -34.853728 kcal Electronic energy + Delta-G solvation = -24953.015491 eV Core-core repulsion = 21392.873380 eV Total energy + Delta-G solvation = -3560.142111 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80623 -39.41042 -38.54548 -35.33485 -34.60625 -32.89664 -31.35458 -30.44901 -30.14512 -27.75642 -27.34497 -25.04294 -23.19504 -23.09113 -22.29394 -20.75062 -19.83781 -18.46385 -17.14085 -16.78572 -16.49526 -16.40393 -16.02549 -15.55250 -15.27805 -14.87445 -14.42096 -14.27929 -13.95624 -13.62476 -13.47088 -13.41646 -12.86453 -12.78267 -12.59160 -12.27562 -12.09749 -11.94587 -11.90935 -11.74696 -11.52400 -11.21889 -11.11876 -10.93641 -10.81173 -10.70751 -10.56058 -10.15826 -9.97945 -9.66551 -9.17712 -9.05665 -8.77674 -8.46320 -7.71478 -6.07218 -4.11969 2.55252 3.06777 3.27796 3.32321 3.35681 3.40821 3.61144 4.02493 4.32344 4.42878 4.57536 4.67904 4.83976 4.88485 5.04466 5.13239 5.14636 5.16254 5.23850 5.27223 5.28561 5.36263 5.46788 5.54276 5.59988 5.65064 5.67256 5.76356 5.86237 5.93008 6.01114 6.13966 6.23037 6.35532 6.37592 6.84401 7.05955 7.38059 7.39832 7.50208 7.89114 8.11072 8.20155 8.36244 8.87072 9.05447 9.53419 11.00884 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004074 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.732383 B = 6871.638316 C = 7692.405192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.522 6.522 15 C -0.002 4.002 16 N -0.441 5.441 17 C 0.011 3.989 18 C -0.135 4.135 19 C 0.006 3.994 20 H 0.083 0.917 21 C 0.139 3.861 22 N -0.723 5.723 23 C 0.510 3.490 24 C -0.174 4.174 25 O -0.554 6.554 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.400 0.600 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -9.006 14.984 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.397 6.397 15 C -0.134 4.134 16 N -0.164 5.164 17 C -0.118 4.118 18 C -0.173 4.173 19 C -0.104 4.104 20 H 0.101 0.899 21 C 0.015 3.985 22 N -0.375 5.375 23 C 0.297 3.703 24 C -0.234 4.234 25 O -0.433 6.433 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.235 0.765 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.938 -7.903 15.573 18.446 hybrid contribution 0.044 -0.741 -1.192 1.404 sum -5.894 -8.644 14.382 17.785 Atomic orbital electron populations 1.22225 0.96873 1.01412 1.02215 1.21399 0.93415 0.84380 1.02591 1.48273 1.63990 1.13180 1.07713 1.19250 0.96272 0.93568 0.77994 1.21419 0.96896 1.31935 1.06233 0.92514 1.24928 0.97837 0.94865 0.96413 1.69923 1.35748 1.33371 1.14350 0.86506 0.84702 0.77680 0.78598 1.20655 1.21074 1.19884 1.19994 0.79183 0.87169 0.84592 1.90690 1.44482 1.17759 1.86778 1.22790 1.01209 0.96825 0.92566 1.68959 1.40051 1.06829 1.00550 1.23608 0.94106 0.98940 0.95129 1.23203 1.01884 0.94872 0.97382 1.23838 0.95815 0.97603 0.93134 0.89906 1.21316 0.91408 0.91256 0.94557 1.46048 1.34900 1.41536 1.15053 1.20808 0.80611 0.82413 0.86442 1.21892 1.00271 0.98439 1.02778 1.90705 1.70568 1.64710 1.17289 0.93385 0.91916 0.92130 0.89813 0.92052 0.95100 0.93977 0.92708 0.88839 0.91750 0.88529 0.91587 0.88451 0.90318 0.90745 0.91233 0.76493 0.88635 0.88987 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.18 37.16 0.38 -1.66 16 2 C 0.11 1.56 5.85 -4.04 -0.02 1.53 16 3 N -0.60 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.25 6.29 5.16 -5.20 -0.03 6.27 16 5 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 9.89 7.35 -10.99 -0.08 9.81 16 14 O -0.52 -12.69 14.98 5.56 0.08 -12.61 16 15 C 0.00 -0.03 3.56 -4.97 -0.02 -0.05 16 16 N -0.44 -5.90 5.74 -237.93 -1.37 -7.27 16 17 C 0.01 0.14 6.34 -7.54 -0.05 0.09 16 18 C -0.14 -1.26 8.00 -26.20 -0.21 -1.47 16 19 C 0.01 0.06 3.25 -71.43 -0.23 -0.17 16 20 H 0.08 0.68 7.63 -51.93 -0.40 0.28 16 21 C 0.14 1.46 5.82 -4.05 -0.02 1.43 16 22 N -0.72 -7.70 5.46 -60.30 -0.33 -8.03 16 23 C 0.51 6.09 7.94 -10.98 -0.09 6.00 16 24 C -0.17 -1.42 10.30 36.00 0.37 -1.05 16 25 O -0.55 -8.85 17.10 5.56 0.10 -8.76 16 26 H 0.05 0.54 7.12 -51.93 -0.37 0.17 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.06 0.71 6.61 -51.93 -0.34 0.37 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.09 1.10 6.13 -51.93 -0.32 0.78 16 35 H 0.06 0.71 6.28 -51.93 -0.33 0.39 16 36 H 0.10 1.46 7.97 -51.93 -0.41 1.04 16 37 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 38 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.40 3.77 6.32 -40.82 -0.26 3.51 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -35.45 366.88 -8.51 -43.96 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.38 Total: 1.00 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.42 Total: 7.42 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.39 Total: -53.19 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.45 -8.51 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269188417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.103 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds