Wall clock time and date at job start Tue Mar 31 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47128 * 2 1 4 4 C 1.46502 * 119.99862 * 269.99829 * 3 2 1 5 5 C 1.50693 * 109.47345 * 270.00130 * 4 3 2 6 6 H 1.08004 * 120.00155 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00316 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99704 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46955 * 90.00315 * 9 7 5 11 11 H 1.48503 * 109.46989 * 209.99873 * 9 7 5 12 12 H 1.48497 * 109.47466 * 329.99648 * 9 7 5 13 13 C 1.34768 * 120.00090 * 90.00103 * 3 2 1 14 14 O 1.21276 * 120.00209 * 180.02562 * 13 3 2 15 15 C 1.50708 * 120.00003 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.46910 * 186.14581 * 15 13 3 17 17 C 1.47479 * 111.00493 * 65.63349 * 16 15 13 18 18 C 1.53512 * 87.93281 * 138.70128 * 17 16 15 19 19 C 1.47479 * 110.99899 * 161.60949 * 16 15 13 20 20 H 1.09000 * 113.47705 * 336.05509 * 19 16 15 21 21 C 1.52998 * 113.48154 * 106.46596 * 19 16 15 22 22 N 1.46496 * 109.46801 * 305.00397 * 21 19 16 23 23 C 1.34784 * 119.99766 * 180.02562 * 22 21 19 24 24 C 1.50699 * 119.99855 * 179.97438 * 23 22 21 25 25 O 1.21279 * 120.00014 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47082 * 299.99893 * 1 2 3 27 27 H 1.08998 * 109.47335 * 59.99958 * 1 2 3 28 28 H 1.08995 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47082 * 240.00106 * 2 1 3 30 30 H 1.08998 * 109.47335 * 120.00042 * 2 1 3 31 31 H 1.09004 * 109.46920 * 29.99889 * 4 3 2 32 32 H 1.09003 * 109.46642 * 149.99563 * 4 3 2 33 33 H 0.96994 * 120.00483 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47491 * 66.14092 * 15 13 3 35 35 H 1.09003 * 109.46649 * 306.14301 * 15 13 3 36 36 H 1.08995 * 113.47894 * 253.46981 * 17 16 15 37 37 H 1.09001 * 113.47328 * 23.94142 * 17 16 15 38 38 H 1.09000 * 114.17011 * 87.62574 * 18 17 16 39 39 H 1.09001 * 114.17186 * 220.33206 * 18 17 16 40 40 H 1.09005 * 109.47161 * 64.99830 * 21 19 16 41 41 H 1.08999 * 109.47543 * 184.99764 * 21 19 16 42 42 H 0.96995 * 120.00486 * 359.97438 * 22 21 19 43 43 H 1.09003 * 109.47268 * 89.99402 * 24 23 22 44 44 H 1.09006 * 109.46946 * 209.99621 * 24 23 22 45 45 H 1.08995 * 109.47078 * 329.99500 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6172 9 14 5.9137 2.0975 -3.4164 10 1 5.9775 0.8769 -4.2596 11 1 6.3927 3.2652 -4.1989 12 1 6.7736 1.9177 -2.2192 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1601 1.1671 15 6 1.9924 1.3059 2.4723 16 7 2.1684 2.2489 3.5848 17 6 1.1414 3.3068 3.5487 18 6 1.0298 3.1733 5.0739 19 6 1.5253 1.7441 4.8123 20 1 0.7208 1.0340 4.6205 21 6 2.5208 1.2413 5.8596 22 7 3.3909 0.2273 5.2590 23 6 4.3514 -0.3608 5.9996 24 6 5.2460 -1.4044 5.3819 25 8 4.4956 -0.0500 7.1630 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5817 1.6876 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6756 3.5178 -4.4430 34 1 2.6982 0.4823 2.5790 35 1 0.9745 0.9160 2.4840 36 1 1.5255 4.2739 3.2244 37 1 0.2346 3.0136 3.0197 38 1 1.7326 3.7947 5.6289 39 1 0.0095 3.2295 5.4534 40 1 3.1263 2.0751 6.2151 41 1 1.9774 0.8040 6.6971 42 1 3.2754 -0.0216 4.3287 43 1 6.1254 -0.9223 4.9547 44 1 5.5572 -2.1153 6.1474 45 1 4.7026 -1.9303 4.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269188417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:13 Heat of formation + Delta-G solvation = -63.113364 kcal Electronic energy + Delta-G solvation = -24954.240920 eV Core-core repulsion = 21392.873380 eV Total energy + Delta-G solvation = -3561.367540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81966 -40.48047 -39.86654 -36.90402 -35.54927 -34.93279 -32.49370 -31.54149 -31.22387 -29.17101 -28.49346 -26.44581 -24.60020 -24.07479 -23.76440 -21.64894 -20.67663 -19.92984 -18.62438 -18.01274 -17.95570 -17.58449 -17.11099 -16.80322 -16.43756 -16.34532 -15.72565 -15.55968 -15.12324 -14.69937 -14.53193 -14.51105 -14.35909 -13.76116 -13.66948 -13.39841 -13.26334 -13.19483 -13.07238 -12.98313 -12.76538 -12.65467 -12.55293 -12.33222 -12.18032 -12.04302 -11.78757 -11.73201 -11.63809 -10.93096 -10.64302 -10.50230 -10.07130 -9.84194 -9.40385 -8.22510 -6.37110 1.35610 1.39028 1.48826 1.66324 1.85562 2.20663 2.31072 2.41682 3.00753 3.07277 3.43418 3.66138 3.79543 3.92083 4.08315 4.10448 4.18454 4.27772 4.33263 4.37182 4.45119 4.52645 4.59729 4.64463 4.68409 4.83234 4.88205 4.95445 4.99015 4.99921 5.06129 5.10298 5.16760 5.22130 5.29638 5.39561 5.50278 5.58359 5.85723 6.00687 6.07135 6.56085 6.71417 6.83742 7.25764 7.29540 7.53730 8.84365 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.004074 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.732383 B = 6871.638316 C = 7692.405192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.583 6.583 15 C 0.013 3.987 16 N -0.473 5.473 17 C 0.003 3.997 18 C -0.120 4.120 19 C 0.023 3.977 20 H 0.115 0.885 21 C 0.138 3.862 22 N -0.716 5.716 23 C 0.503 3.497 24 C -0.169 4.169 25 O -0.603 6.603 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.408 0.592 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 -11.948 16.111 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.118 4.118 16 N -0.196 5.196 17 C -0.125 4.125 18 C -0.158 4.158 19 C -0.087 4.087 20 H 0.132 0.868 21 C 0.014 3.986 22 N -0.368 5.368 23 C 0.292 3.708 24 C -0.228 4.228 25 O -0.485 6.485 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.245 0.755 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.445 -10.904 16.690 20.952 hybrid contribution 0.153 0.212 -1.554 1.576 sum -6.293 -10.693 15.136 19.571 Atomic orbital electron populations 1.22159 0.94665 1.03531 1.01552 1.21767 0.95213 0.81311 1.04094 1.48287 1.64085 1.15149 1.06077 1.18637 0.95142 0.91347 0.80562 1.21714 0.97934 1.31843 1.06383 0.92825 1.25842 1.02248 0.94493 0.96538 1.70046 1.37802 1.34264 1.14828 0.85443 0.79156 0.78185 0.78197 1.18644 1.20896 1.19833 1.21128 0.77566 0.86707 0.86288 1.90663 1.47097 1.20666 1.87818 1.22740 1.03854 0.96434 0.88758 1.68944 1.41380 1.07543 1.01754 1.23587 0.93975 0.97235 0.97753 1.23155 1.03507 0.94492 0.94616 1.23843 0.95795 0.98222 0.90805 0.86750 1.21316 0.91361 0.90693 0.95224 1.46048 1.34473 1.40971 1.15319 1.21496 0.80765 0.82655 0.85924 1.21921 0.99862 0.97559 1.03502 1.90683 1.71922 1.66398 1.19456 0.92098 0.94600 0.88508 0.91075 0.87774 0.96193 0.98938 0.92485 0.86344 0.88154 0.92438 0.90859 0.89122 0.87279 0.92997 0.90067 0.75538 0.88257 0.88469 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.18 71.98 0.73 -2.69 16 2 C 0.10 2.64 5.85 86.38 0.50 3.14 16 3 N -0.60 -24.02 2.46 -826.16 -2.03 -26.05 16 4 C 0.26 14.04 5.16 85.63 0.44 14.48 16 5 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 9 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.49 19.32 7.35 87.66 0.64 19.96 16 14 O -0.58 -29.67 14.98 -3.02 -0.05 -29.71 16 15 C 0.01 0.32 3.56 85.56 0.30 0.62 16 16 N -0.47 -11.83 5.74 -906.68 -5.21 -17.04 16 17 C 0.00 0.08 6.34 83.58 0.53 0.61 16 18 C -0.12 -1.97 8.00 30.94 0.25 -1.73 16 19 C 0.02 0.36 3.25 42.19 0.14 0.50 16 20 H 0.11 1.22 7.63 -2.39 -0.02 1.20 16 21 C 0.14 2.58 5.82 86.38 0.50 3.09 16 22 N -0.72 -13.34 5.46 -463.06 -2.53 -15.87 16 23 C 0.50 11.09 7.94 87.66 0.70 11.79 16 24 C -0.17 -2.31 10.30 71.24 0.73 -1.58 16 25 O -0.60 -18.89 17.10 -3.03 -0.05 -18.94 16 26 H 0.06 1.14 7.12 -2.39 -0.02 1.13 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 30 H 0.10 1.92 6.61 -2.39 -0.02 1.90 16 31 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 32 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.12 2.26 6.13 -2.39 -0.01 2.24 16 35 H 0.10 1.71 6.28 -2.39 -0.01 1.70 16 36 H 0.06 1.85 7.97 -2.39 -0.02 1.83 16 37 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 38 H 0.09 1.63 7.94 -2.39 -0.02 1.61 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.22 7.88 -2.38 -0.02 1.20 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.41 6.14 6.32 -92.71 -0.59 5.55 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -83.73 366.88 -0.98 -84.71 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.39 Total: 13.51 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 6.18 Total: 18.54 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -9.48 Total: -114.91 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.10 Total: -48.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -83.73 -0.98 -84.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269188417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.599 kcal (2) G-P(sol) polarization free energy of solvation -83.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds