Wall clock time and date at job start Tue Mar 31 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47140 * 2 1 4 4 C 1.46503 * 119.99619 * 270.00134 * 3 2 1 5 5 C 1.50701 * 109.46774 * 269.99787 * 4 3 2 6 6 H 1.08000 * 120.00446 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99775 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00422 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00017 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46856 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47289 * 119.99660 * 9 7 5 12 12 H 1.48501 * 109.46944 * 239.99830 * 9 7 5 13 13 C 1.34771 * 119.99873 * 89.99690 * 3 2 1 14 14 O 1.21289 * 119.99957 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00313 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47029 * 179.97438 * 15 13 3 17 17 C 1.47957 * 110.99872 * 268.47299 * 16 15 13 18 18 C 1.53937 * 86.17920 * 222.41747 * 17 16 15 19 19 C 1.47959 * 110.99905 * 169.11362 * 16 15 13 20 20 H 1.09004 * 113.75954 * 23.26493 * 19 16 15 21 21 C 1.53001 * 113.75766 * 251.90460 * 19 16 15 22 22 N 1.46491 * 109.47410 * 58.93278 * 21 19 16 23 23 C 1.34778 * 119.99939 * 180.02562 * 22 21 19 24 24 C 1.50705 * 120.00260 * 180.02562 * 23 22 21 25 25 O 1.21284 * 120.00270 * 359.97438 * 23 22 21 26 26 H 1.09003 * 109.47237 * 60.00103 * 1 2 3 27 27 H 1.09005 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47081 * 300.00165 * 1 2 3 29 29 H 1.09001 * 109.47081 * 239.99835 * 2 1 3 30 30 H 1.08998 * 109.46818 * 120.00131 * 2 1 3 31 31 H 1.08993 * 109.47102 * 29.99761 * 4 3 2 32 32 H 1.09001 * 109.46970 * 150.00114 * 4 3 2 33 33 H 0.96994 * 120.00665 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47033 * 59.99731 * 15 13 3 35 35 H 1.08994 * 109.46774 * 299.99629 * 15 13 3 36 36 H 1.09000 * 113.75975 * 108.10133 * 17 16 15 37 37 H 1.09001 * 113.86215 * 336.74742 * 17 16 15 38 38 H 1.09000 * 113.73632 * 138.07919 * 18 17 16 39 39 H 1.08998 * 113.73683 * 269.35977 * 18 17 16 40 40 H 1.09005 * 109.47055 * 178.93774 * 21 19 16 41 41 H 1.08997 * 109.46942 * 298.92801 * 21 19 16 42 42 H 0.96995 * 120.00360 * 359.97438 * 22 21 19 43 43 H 1.09004 * 109.47075 * 89.98948 * 24 23 22 44 44 H 1.08998 * 109.47214 * 209.99508 * 24 23 22 45 45 H 1.09002 * 109.46422 * 329.99841 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 3.3494 3.1263 -3.6177 9 14 5.9134 2.0962 -3.4171 10 1 6.6008 1.2402 -2.4170 11 1 5.9205 1.4179 -4.7381 12 1 6.6215 3.3971 -3.5248 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2059 3.5888 17 6 3.7184 2.0440 4.0152 18 6 3.1821 2.1139 5.4564 19 6 1.8366 1.6455 4.8734 20 1 1.7161 0.5622 4.8622 21 6 0.6248 2.3766 5.4549 22 7 -0.4830 2.3235 4.4980 23 6 -1.6609 2.9060 4.7977 24 6 -2.8009 2.8508 3.8135 25 8 -1.8038 3.4738 5.8598 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1385 33 1 3.6754 3.5168 -4.4436 34 1 2.6228 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 4.3588 2.8833 3.7438 37 1 4.1501 1.0779 3.7536 38 1 3.6426 1.3925 6.1314 39 1 3.1551 3.1236 5.8660 40 1 0.3238 1.8971 6.3864 41 1 0.8870 3.4165 5.6499 42 1 -0.3687 1.8697 3.6484 43 1 -3.4009 1.9606 4.0020 44 1 -3.4225 3.7389 3.9274 45 1 -2.4035 2.8130 2.7992 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269188418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:15 Heat of formation + Delta-G solvation = -65.192473 kcal Electronic energy + Delta-G solvation = -25015.087889 eV Core-core repulsion = 21453.630192 eV Total energy + Delta-G solvation = -3561.457697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57771 -40.45922 -39.84447 -36.85355 -35.57761 -34.92641 -32.42462 -31.52357 -31.21327 -29.13877 -28.55857 -26.37848 -24.57660 -24.18682 -23.74176 -21.67839 -20.57739 -19.89408 -18.61881 -18.05188 -17.84622 -17.55255 -17.08897 -16.77213 -16.49954 -16.36714 -15.86661 -15.51693 -15.02085 -14.65507 -14.57497 -14.47405 -14.35827 -13.99729 -13.51916 -13.41571 -13.27347 -13.20130 -13.06996 -12.84954 -12.74376 -12.63833 -12.47685 -12.34590 -12.13715 -11.90165 -11.85629 -11.75000 -11.66915 -10.95094 -10.65266 -10.55076 -10.08535 -9.67311 -9.38165 -8.22279 -6.37182 1.34994 1.37755 1.48936 1.64410 1.91235 2.16853 2.31415 2.42737 2.98705 3.07231 3.51734 3.67979 3.81832 3.90131 4.06764 4.12150 4.13391 4.29120 4.33612 4.38023 4.47142 4.49119 4.60089 4.66792 4.67869 4.81080 4.87375 4.98351 4.98971 5.02885 5.08220 5.08613 5.20602 5.24996 5.32972 5.43015 5.50794 5.59414 5.87930 6.02377 6.08077 6.53479 6.72127 6.88197 7.23737 7.29983 7.59944 8.84646 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003917 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.988952 B = 7146.181639 C = 7925.697997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.016 3.984 16 N -0.485 5.485 17 C 0.000 4.000 18 C -0.118 4.118 19 C 0.025 3.975 20 H 0.119 0.881 21 C 0.139 3.861 22 N -0.716 5.716 23 C 0.503 3.497 24 C -0.169 4.169 25 O -0.602 6.602 26 H 0.036 0.964 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.020 0.980 32 H -0.008 1.008 33 H 0.266 0.734 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.407 0.593 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -12.425 16.590 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.284 3.716 14 O -0.463 6.463 15 C -0.115 4.115 16 N -0.208 5.208 17 C -0.129 4.129 18 C -0.156 4.156 19 C -0.084 4.084 20 H 0.136 0.864 21 C 0.015 3.985 22 N -0.368 5.368 23 C 0.292 3.708 24 C -0.228 4.228 25 O -0.484 6.484 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.038 0.962 32 H 0.010 0.990 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.243 0.757 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.342 -10.723 16.912 21.328 hybrid contribution 1.262 -0.353 -1.311 1.854 sum -6.080 -11.077 15.600 20.075 Atomic orbital electron populations 1.22172 0.94365 1.03583 1.01844 1.21758 0.95510 0.81324 1.03812 1.48300 1.64379 1.15069 1.06072 1.18633 0.95112 0.91341 0.80674 1.21747 0.97963 1.31749 1.06366 0.92907 1.25858 1.02299 0.94528 0.96538 1.70056 1.37699 1.34345 1.14833 0.85387 0.79135 0.77935 0.78454 1.18984 1.19393 1.21009 1.21213 0.77496 0.86627 0.86226 1.90656 1.47116 1.20700 1.87837 1.22675 1.04343 0.95115 0.89342 1.68373 1.08048 1.43324 1.01085 1.23945 0.91139 1.01774 0.96009 1.23253 0.93413 1.03344 0.95607 1.23867 0.94759 0.99641 0.90110 0.86366 1.21290 0.84784 1.00231 0.92202 1.46013 1.12200 1.56830 1.21738 1.21481 0.84830 0.76706 0.87820 1.21914 0.96114 1.06289 0.98467 1.90682 1.83835 1.45851 1.27988 0.94515 0.88530 0.91602 0.91352 0.88097 0.96162 0.99035 0.92490 0.88574 0.86195 0.91916 0.89522 0.87406 0.89590 0.89836 0.93314 0.75699 0.86372 0.89128 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 71.98 0.74 -2.60 16 2 C 0.10 2.66 5.93 86.38 0.51 3.18 16 3 N -0.61 -24.36 2.46 -826.14 -2.03 -26.39 16 4 C 0.26 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 9 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.50 19.68 7.73 87.66 0.68 20.36 16 14 O -0.58 -30.52 16.01 -3.06 -0.05 -30.57 16 15 C 0.02 0.40 3.68 85.56 0.31 0.71 16 16 N -0.48 -12.17 5.33 -888.39 -4.74 -16.90 16 17 C 0.00 0.00 7.96 86.41 0.69 0.69 16 18 C -0.12 -1.85 7.84 31.24 0.25 -1.60 16 19 C 0.03 0.40 3.38 45.02 0.15 0.56 16 20 H 0.12 1.17 7.92 -2.38 -0.02 1.15 16 21 C 0.14 2.71 5.80 86.38 0.50 3.21 16 22 N -0.72 -14.22 5.50 -463.06 -2.55 -16.76 16 23 C 0.50 11.73 7.94 87.66 0.70 12.42 16 24 C -0.17 -2.53 10.30 71.24 0.73 -1.80 16 25 O -0.60 -19.47 17.10 -3.04 -0.05 -19.52 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 29 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.10 1.93 6.44 -2.39 -0.02 1.92 16 31 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 32 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.10 1.83 6.62 -2.39 -0.02 1.81 16 35 H 0.12 2.06 5.45 -2.39 -0.01 2.05 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.66 7.47 -2.39 -0.02 1.64 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.52 7.94 -2.39 -0.02 1.50 16 40 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.05 1.22 7.91 -2.39 -0.02 1.20 16 42 H 0.41 6.71 6.55 -92.71 -0.61 6.10 16 43 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -85.41 369.70 -0.33 -85.74 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.37 Total: 13.93 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 6.40 Total: 19.82 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -9.03 Total: -116.27 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.10 Total: -50.09 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -85.41 -0.33 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269188418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.543 kcal (2) G-P(sol) polarization free energy of solvation -85.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds