Wall clock time and date at job start Tue Mar 31 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47238 * 2 1 4 4 C 1.46895 * 111.00153 * 287.67239 * 3 2 1 5 5 C 1.53004 * 109.46915 * 160.34063 * 4 3 2 6 6 N 1.46506 * 109.46708 * 184.87746 * 5 4 3 7 7 C 1.34776 * 119.99879 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99866 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00272 * 180.02562 * 7 6 5 10 10 H 1.08995 * 115.54545 * 34.32717 * 9 7 6 11 11 C 1.52994 * 117.49916 * 248.62294 * 9 7 6 12 12 C 1.52997 * 117.49878 * 179.97438 * 9 7 6 13 13 H 1.08999 * 117.49868 * 0.02562 * 12 9 7 14 14 C 1.52997 * 117.50119 * 215.00135 * 12 9 7 15 15 C 1.46902 * 110.99897 * 163.71466 * 3 2 1 16 16 C 1.50702 * 109.46851 * 293.95414 * 15 3 2 17 17 O 1.21289 * 120.00536 * 0.02562 * 16 15 3 18 18 N 1.34784 * 119.99636 * 179.72014 * 16 15 3 19 19 C 1.37096 * 120.00025 * 180.27504 * 18 16 15 20 20 H 1.07999 * 120.00107 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99982 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00233 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99957 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47095 * 60.00261 * 23 21 19 25 25 H 1.48501 * 109.47104 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46977 * 300.00426 * 23 21 19 27 27 H 1.08994 * 109.47368 * 178.93624 * 1 2 3 28 28 H 1.08999 * 109.46985 * 298.93617 * 1 2 3 29 29 H 1.08999 * 109.47559 * 58.93400 * 1 2 3 30 30 H 1.09006 * 109.46719 * 240.00282 * 2 1 3 31 31 H 1.08996 * 109.47240 * 120.00450 * 2 1 3 32 32 H 1.09001 * 109.46973 * 280.33885 * 4 3 2 33 33 H 1.08993 * 109.47394 * 40.33635 * 4 3 2 34 34 H 1.09002 * 109.47148 * 304.87545 * 5 4 3 35 35 H 1.08998 * 109.47498 * 64.88096 * 5 4 3 36 36 H 0.97001 * 120.00007 * 0.02562 * 6 5 4 37 37 H 1.09004 * 117.49766 * 0.02562 * 11 9 7 38 38 H 1.09004 * 117.49943 * 145.01871 * 11 9 7 39 39 H 1.09007 * 109.46934 * 60.00027 * 14 12 9 40 40 H 1.08993 * 109.47177 * 180.02562 * 14 12 9 41 41 H 1.09006 * 109.46782 * 300.00670 * 14 12 9 42 42 H 1.09001 * 109.47029 * 173.96221 * 15 3 2 43 43 H 1.08995 * 109.47171 * 53.95531 * 15 3 2 44 44 H 0.97001 * 119.99585 * 0.28864 * 18 16 15 45 45 H 0.96995 * 120.00028 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8027 2.0201 -1.3067 5 6 1.8535 3.5412 -1.1491 6 7 1.5222 4.1758 -2.4273 7 6 1.5037 5.5197 -2.5276 8 8 1.7618 6.2036 -1.5598 9 6 1.1624 6.1726 -3.8422 10 1 0.4262 5.6475 -4.4507 11 6 2.2815 6.9173 -4.5727 12 6 1.1578 7.7018 -3.8914 13 1 1.4021 8.2356 -2.9730 14 6 0.1206 8.3766 -4.7912 15 6 3.4363 1.4425 0.3846 16 6 3.5849 1.0096 1.8204 17 8 2.6071 0.6847 2.4603 18 7 4.8052 0.9776 2.3917 19 6 4.9412 0.5784 3.6962 20 1 4.0705 0.2892 4.2660 21 6 6.1992 0.5460 4.2853 22 7 7.2586 0.8984 3.5922 23 14 6.3845 0.0014 6.0626 24 1 5.8838 -1.3890 6.2090 25 1 7.8170 0.0555 6.4501 26 1 5.5998 0.9052 6.9416 27 1 -0.3634 -1.0274 -0.0191 28 1 -0.3633 0.4972 0.8994 29 1 -0.3634 0.5303 -0.8802 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.5809 1.7004 -1.9997 33 1 0.8274 1.7275 -1.6954 34 1 1.1339 3.8522 -0.3917 35 1 2.8556 3.8415 -0.8433 36 1 1.3154 3.6288 -3.2012 37 1 3.2648 6.9347 -4.1027 38 1 2.2818 6.8822 -5.6622 39 1 -0.8809 8.0959 -4.4651 40 1 0.2338 9.4588 -4.7278 41 1 0.2703 8.0556 -5.8221 42 1 3.8018 2.4633 0.2732 43 1 4.0142 0.7775 -0.2571 44 1 5.5873 1.2372 1.8799 45 1 8.1368 0.8753 4.0034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317476346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:46 Heat of formation + Delta-G solvation = -49.139700 kcal Electronic energy + Delta-G solvation = -23674.889608 eV Core-core repulsion = 20114.128011 eV Total energy + Delta-G solvation = -3560.761597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15271 -38.80923 -37.32623 -36.66726 -34.71517 -33.80163 -31.35482 -30.87274 -29.63922 -28.75475 -26.36549 -24.58289 -23.90782 -22.36946 -21.18537 -20.94338 -20.02389 -19.14617 -17.85260 -17.61148 -16.40601 -16.03099 -15.60995 -15.22599 -14.94553 -14.67538 -14.38494 -14.26389 -13.96314 -13.73014 -13.61663 -13.50518 -13.18503 -13.01108 -12.42479 -12.33487 -12.16483 -11.75604 -11.70996 -11.56214 -11.46168 -11.44120 -11.08837 -10.79968 -10.67491 -10.52052 -10.41668 -10.40204 -10.19105 -9.93088 -9.43574 -9.13729 -8.42098 -7.97387 -7.89228 -6.39217 -3.79975 2.36392 2.90232 3.21943 3.27523 3.31979 3.52553 3.92133 4.02631 4.25181 4.40871 4.43944 4.50810 4.80243 4.87945 4.98675 5.01249 5.13641 5.26849 5.29885 5.35527 5.37075 5.41056 5.44599 5.57655 5.62631 5.71092 5.77672 5.82973 5.87734 5.91947 5.98677 5.99430 6.12304 6.28303 6.33616 6.47938 6.53392 7.26580 7.31918 7.40416 7.57399 8.08405 8.12609 8.64132 9.20378 9.56814 10.08536 10.78525 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002701 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.001109 B =10364.335374 C =11454.752900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 N -0.512 5.512 4 C 0.044 3.956 5 C 0.121 3.879 6 N -0.726 5.726 7 C 0.540 3.460 8 O -0.536 6.536 9 C -0.191 4.191 10 H 0.122 0.878 11 C -0.149 4.149 12 C -0.123 4.123 13 H 0.118 0.882 14 C -0.123 4.123 15 C 0.042 3.958 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.021 0.979 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 7.148 -20.212 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.003 4.003 6 N -0.377 5.377 7 C 0.326 3.674 8 O -0.413 6.413 9 C -0.213 4.213 10 H 0.140 0.860 11 C -0.187 4.187 12 C -0.142 4.142 13 H 0.136 0.864 14 C -0.181 4.181 15 C -0.089 4.089 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.950 7.664 -18.631 22.929 hybrid contribution 1.111 -0.929 -0.439 1.513 sum -9.839 6.735 -19.070 22.490 Atomic orbital electron populations 1.21716 0.95321 1.00786 1.01945 1.22195 0.95864 0.87989 1.01560 1.61432 1.17475 1.18653 1.26080 1.22258 1.01526 0.93498 0.91252 1.21367 1.02138 0.91833 0.84957 1.45863 1.71508 1.06485 1.13858 1.19643 0.76745 0.82007 0.89005 1.90735 1.48461 1.63106 1.38995 1.22305 1.04941 0.96503 0.97521 0.85973 1.23119 0.94205 1.01898 0.99467 1.22395 0.99111 0.90814 1.01841 0.86406 1.21402 0.97846 1.00577 0.98226 1.21941 0.88582 1.01914 0.96441 1.19698 0.84220 0.84991 0.88192 1.90500 1.37896 1.53201 1.64407 1.41868 1.06823 1.58671 1.12735 1.19642 0.94431 1.41095 0.87626 0.87955 1.25260 0.94920 0.97544 1.00243 1.69604 0.98971 1.48207 1.37589 0.85922 0.77008 0.79285 0.82022 1.19943 1.21006 1.19873 0.92833 0.91518 0.93722 0.96030 0.88165 0.94349 0.90142 0.90183 0.91277 0.76778 0.88181 0.87803 0.91920 0.91632 0.92393 0.89307 0.93385 0.77515 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.00 37.16 0.37 -1.52 16 2 C 0.05 0.81 5.23 -3.83 -0.02 0.79 16 3 N -0.51 -8.32 4.13 -236.08 -0.97 -9.29 16 4 C 0.04 0.52 4.94 -3.82 -0.02 0.51 16 5 C 0.12 1.56 5.71 -4.04 -0.02 1.54 16 6 N -0.73 -7.50 5.56 -60.29 -0.33 -7.83 16 7 C 0.54 6.58 7.61 -10.99 -0.08 6.50 16 8 O -0.54 -9.05 16.26 5.55 0.09 -8.96 16 9 C -0.19 -1.62 5.91 -91.78 -0.54 -2.16 16 10 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.15 -1.11 9.88 -26.71 -0.26 -1.37 16 12 C -0.12 -1.03 5.92 -90.60 -0.54 -1.57 16 13 H 0.12 1.23 7.67 -51.93 -0.40 0.83 16 14 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 15 C 0.04 0.76 5.28 -4.97 -0.03 0.74 16 16 C 0.44 10.51 7.34 -10.98 -0.08 10.43 16 17 O -0.58 -15.44 14.06 5.55 0.08 -15.36 16 18 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 19 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.51 6.53 -51.93 -0.34 0.17 16 30 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 31 H 0.10 1.95 5.81 -51.93 -0.30 1.65 16 32 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 33 H 0.08 0.84 6.26 -51.93 -0.32 0.51 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.01 6.94 -51.93 -0.36 0.65 16 36 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 42 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -33.45 371.26 -8.28 -41.73 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.29 Total: 10.94 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.09 Total: 5.49 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.64 Total: -55.72 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.17 Total: -24.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.45 -8.28 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317476346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.410 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds