Wall clock time and date at job start Tue Mar 31 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46983 * 2 1 4 4 C 1.46499 * 119.99975 * 269.99369 * 3 2 1 5 5 C 1.53001 * 109.47489 * 265.22173 * 4 3 2 6 6 C 1.34781 * 120.00247 * 89.99911 * 3 2 1 7 7 O 1.21341 * 119.99845 * 5.17679 * 6 3 2 8 8 C 1.49452 * 120.00058 * 185.17560 * 6 3 2 9 9 O 1.21349 * 120.00127 * 274.73069 * 8 6 3 10 10 N 1.34781 * 119.99823 * 95.00147 * 8 6 3 11 11 C 1.47079 * 120.87768 * 4.59617 * 10 8 6 12 12 C 1.53697 * 108.27784 * 128.75357 * 11 10 8 13 13 N 1.46893 * 109.25857 * 54.07637 * 12 11 10 14 14 C 1.46905 * 111.00245 * 172.60807 * 13 12 11 15 15 C 1.50701 * 109.46878 * 294.30554 * 14 13 12 16 16 H 1.07993 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.37886 * 119.99377 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00278 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99496 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47326 * 59.99650 * 19 17 15 21 21 H 1.48502 * 109.46941 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46835 * 299.99564 * 19 17 15 23 23 C 1.46901 * 111.26954 * 296.75878 * 13 12 11 24 24 C 1.47080 * 120.88403 * 184.86609 * 10 8 6 25 25 H 1.08998 * 109.47358 * 300.00549 * 1 2 3 26 26 H 1.08999 * 109.47169 * 60.00503 * 1 2 3 27 27 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47391 * 239.99925 * 2 1 3 29 29 H 1.08999 * 109.47169 * 119.99497 * 2 1 3 30 30 H 1.08999 * 109.47111 * 25.22757 * 4 3 2 31 31 H 1.09002 * 109.47446 * 145.22161 * 4 3 2 32 32 H 1.09002 * 109.46904 * 179.97438 * 5 4 3 33 33 H 1.08989 * 109.47056 * 299.99691 * 5 4 3 34 34 H 1.09003 * 109.46878 * 60.00132 * 5 4 3 35 35 H 1.09005 * 109.62481 * 248.51295 * 11 10 8 36 36 H 1.08994 * 109.63477 * 9.09293 * 11 10 8 37 37 H 1.09001 * 109.64364 * 294.07453 * 12 11 10 38 38 H 1.09003 * 109.42040 * 173.94047 * 12 11 10 39 39 H 1.08998 * 109.46585 * 54.30280 * 14 13 12 40 40 H 1.08991 * 109.47278 * 174.30111 * 14 13 12 41 41 H 0.97000 * 119.99817 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.49151 * 303.14463 * 23 13 12 43 43 H 1.09008 * 109.49340 * 183.06277 * 23 13 12 44 44 H 1.09006 * 109.62494 * 350.90050 * 24 10 8 45 45 H 1.08996 * 109.63020 * 111.47729 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7375 1.9312 -1.6502 6 6 2.2429 2.0166 1.1672 7 8 2.1313 1.4165 2.2159 8 6 2.6294 3.4603 1.1698 9 8 3.7933 3.7770 1.0370 10 7 1.6859 4.4102 1.3251 11 6 0.2862 4.0471 1.5934 12 6 -0.1895 4.8372 2.8230 13 7 0.0483 6.2695 2.6003 14 6 -0.5496 7.0756 3.6730 15 6 -2.0499 6.9419 3.6250 16 1 -2.5130 6.3208 2.8727 17 6 -2.8314 7.6128 4.5418 18 7 -2.2675 8.3688 5.4583 19 14 -4.6912 7.4477 4.4819 20 1 -5.0678 6.0229 4.6638 21 1 -5.2955 8.2615 5.5672 22 1 -5.1885 7.9273 3.1674 23 6 1.4824 6.5566 2.4630 24 6 2.0277 5.8372 1.2248 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6419 1.6299 -2.0482 31 1 2.0141 3.1277 -1.1615 32 1 3.9191 2.4446 -2.5945 33 1 4.3581 2.3731 -0.8708 34 1 3.9860 0.8753 -1.7576 35 1 -0.3298 4.3009 0.7307 36 1 0.2172 2.9781 1.7943 37 1 0.3615 4.5097 3.7046 38 1 -1.2551 4.6647 2.9746 39 1 -0.1842 6.7244 4.6380 40 1 -0.2735 8.1213 3.5387 41 1 -2.8173 8.8405 6.1034 42 1 2.0102 6.2052 3.3497 43 1 1.6295 7.6311 2.3536 44 1 3.1109 5.9521 1.1819 45 1 1.5761 6.2597 0.3273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335548523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:22 Heat of formation + Delta-G solvation = -78.324432 kcal Electronic energy + Delta-G solvation = -25390.066020 eV Core-core repulsion = 21828.038878 eV Total energy + Delta-G solvation = -3562.027142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17507 -40.25839 -38.96629 -37.51372 -36.12797 -34.44830 -33.11747 -32.33648 -30.74990 -30.08548 -27.78135 -26.11551 -24.80426 -24.57450 -23.97463 -22.89806 -21.37795 -19.71465 -18.97862 -18.50735 -18.23549 -17.72576 -16.79858 -16.54748 -16.18133 -16.05419 -15.95792 -15.45959 -15.40461 -15.00988 -14.92159 -14.67338 -14.38423 -14.07697 -13.90341 -13.59904 -13.50467 -13.13564 -13.08686 -12.85368 -12.75681 -12.62991 -12.55782 -12.44525 -12.35702 -12.19697 -12.00022 -11.92271 -11.80009 -11.32302 -10.74988 -10.60974 -10.01910 -9.96776 -9.14843 -8.20019 -6.30591 0.87045 0.95309 1.39534 1.44035 1.46958 1.54634 2.17020 2.41486 2.96346 3.10533 3.17401 3.78124 3.91385 3.93653 4.09633 4.13340 4.15754 4.16139 4.31868 4.38711 4.43505 4.48312 4.53504 4.62184 4.69215 4.76144 4.85295 4.86552 4.92813 4.94656 5.02166 5.09535 5.17254 5.25953 5.30717 5.32192 5.44226 5.62751 5.93133 5.95459 6.01141 6.20370 6.50829 6.57951 6.62711 6.84513 7.39400 8.91294 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003801 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.088185 B = 7365.201773 C = 8161.251745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.097 3.903 5 C -0.172 4.172 6 C 0.516 3.484 7 O -0.551 6.551 8 C 0.515 3.485 9 O -0.544 6.544 10 N -0.590 5.590 11 C 0.123 3.877 12 C 0.052 3.948 13 N -0.530 5.530 14 C 0.207 3.793 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.038 3.962 24 C 0.126 3.874 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.006 0.994 38 H 0.090 0.910 39 H -0.044 1.044 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.010 0.990 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -15.233 -18.464 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.319 5.319 4 C -0.025 4.025 5 C -0.230 4.230 6 C 0.299 3.701 7 O -0.429 6.429 8 C 0.298 3.702 9 O -0.422 6.422 10 N -0.324 5.324 11 C 0.001 3.999 12 C -0.077 4.077 13 N -0.255 5.255 14 C 0.081 3.919 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.197 4.197 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.091 4.091 24 C 0.005 3.995 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.024 0.976 38 H 0.109 0.891 39 H -0.027 1.027 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.565 -15.151 -18.297 24.647 hybrid contribution -0.228 0.236 1.804 1.833 sum 6.337 -14.916 -16.494 23.123 Atomic orbital electron populations 1.22120 0.94315 1.03627 1.02187 1.21787 0.95421 0.80058 1.04483 1.48223 1.62952 1.15425 1.05338 1.21946 0.98296 0.97676 0.84551 1.22221 0.95265 1.03088 1.02386 1.20226 0.77130 0.87648 0.85137 1.90791 1.52127 1.67353 1.32612 1.20399 0.85832 0.86901 0.77057 1.90744 1.18433 1.82050 1.50932 1.48330 1.09090 1.06909 1.68093 1.22076 0.80148 0.98873 0.98789 1.22381 1.01848 0.88311 0.95153 1.62057 1.11636 1.05295 1.46527 1.19402 0.94607 0.91858 0.86056 1.21428 0.91521 1.28654 1.14494 0.91043 1.25946 1.04255 0.94739 0.94781 1.70090 1.37642 1.31466 1.18534 0.85412 0.78687 0.78438 0.77955 1.19155 1.21336 1.18881 1.22513 0.88652 1.01316 0.96618 1.21876 1.01653 0.77470 0.98510 0.94500 0.90722 0.89491 0.86511 0.91378 0.85559 0.91129 0.89300 0.94457 0.91214 0.87422 0.89638 0.97617 0.89145 1.02663 0.97107 0.92738 0.97191 0.88925 0.88367 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.24 71.98 0.74 -1.35 16 2 C 0.10 1.49 6.14 86.38 0.53 2.02 16 3 N -0.59 -11.30 2.48 -823.42 -2.04 -13.34 16 4 C 0.10 1.30 5.94 86.38 0.51 1.81 16 5 C -0.17 -2.41 10.21 71.98 0.73 -1.67 16 6 C 0.52 14.88 5.60 87.27 0.49 15.37 16 7 O -0.55 -19.74 16.43 -3.22 -0.05 -19.79 16 8 C 0.52 15.94 5.69 87.27 0.50 16.44 16 9 O -0.54 -19.05 15.37 -3.24 -0.05 -19.10 16 10 N -0.59 -17.34 3.00 -818.62 -2.46 -19.80 16 11 C 0.12 3.53 6.51 86.50 0.56 4.10 16 12 C 0.05 1.98 5.47 86.54 0.47 2.45 16 13 N -0.53 -22.01 4.62 -898.88 -4.15 -26.16 16 14 C 0.21 10.85 4.72 85.56 0.40 11.26 16 15 C -0.52 -28.59 8.41 25.60 0.22 -28.38 16 16 H 0.07 3.72 7.13 -2.91 -0.02 3.69 16 17 C 0.00 0.05 5.46 84.66 0.46 0.51 16 18 N -0.94 -56.08 13.29 21.45 0.28 -55.80 16 19 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 C 0.04 1.35 5.62 86.38 0.49 1.83 16 24 C 0.13 3.57 6.61 86.35 0.57 4.14 16 25 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.12 0.88 8.07 -2.39 -0.02 0.86 16 29 H 0.07 1.28 7.36 -2.39 -0.02 1.26 16 30 H 0.13 0.79 8.04 -2.39 -0.02 0.77 16 31 H 0.07 1.10 6.97 -2.39 -0.02 1.08 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.80 6.92 -2.39 -0.02 0.78 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.09 2.36 6.29 -2.39 -0.02 2.35 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.09 3.59 6.67 -2.39 -0.02 3.58 16 39 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 40 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 41 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.09 3.12 7.99 -2.38 -0.02 3.10 16 44 H 0.10 2.70 7.04 -2.38 -0.02 2.68 16 45 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -72.85 362.83 1.19 -71.66 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.96 Total: 8.72 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.68 Total: 28.53 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -8.37 Total: -115.10 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.10 Total: -38.89 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.85 1.19 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335548523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.667 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds