Wall clock time and date at job start Tue Mar 31 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00082 * 2 1 4 4 N 1.34779 * 119.99704 * 179.97438 * 2 1 3 5 5 C 1.47020 * 125.64960 * 359.97438 * 4 2 1 6 6 C 1.54328 * 107.26802 * 181.09415 * 5 4 2 7 7 C 1.55155 * 102.94337 * 22.18826 * 6 5 4 8 8 H 1.09004 * 111.00114 * 82.61308 * 7 6 5 9 9 C 1.53002 * 111.00407 * 206.42202 * 7 6 5 10 10 N 1.46897 * 109.47058 * 184.05746 * 9 7 6 11 11 C 1.46905 * 110.99769 * 199.87447 * 10 9 7 12 12 C 1.46904 * 110.99755 * 75.92570 * 10 9 7 13 13 C 1.50702 * 109.47224 * 189.99578 * 12 10 9 14 14 O 1.21282 * 119.99698 * 0.02562 * 13 12 10 15 15 N 1.34768 * 120.00314 * 180.02562 * 13 12 10 16 16 C 1.46497 * 120.00438 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47541 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99748 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00417 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47464 * 59.99449 * 21 19 17 23 23 H 1.48499 * 109.47359 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46783 * 299.99334 * 21 19 17 25 25 C 1.47474 * 125.62499 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47580 * 240.00103 * 1 2 3 27 27 H 1.09005 * 109.46873 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46578 * 119.99910 * 1 2 3 29 29 H 1.08995 * 109.88195 * 61.67780 * 5 4 2 30 30 H 1.08996 * 110.00893 * 300.57996 * 5 4 2 31 31 H 1.09000 * 110.71431 * 263.82285 * 6 5 4 32 32 H 1.09001 * 110.86862 * 140.62790 * 6 5 4 33 33 H 1.09005 * 109.46960 * 64.05901 * 9 7 6 34 34 H 1.09000 * 109.47122 * 304.06470 * 9 7 6 35 35 H 1.08995 * 109.47333 * 290.62516 * 11 10 9 36 36 H 1.09004 * 109.46963 * 50.62763 * 11 10 9 37 37 H 1.09002 * 109.46686 * 170.62408 * 11 10 9 38 38 H 1.09006 * 109.46995 * 69.99550 * 12 10 9 39 39 H 1.08993 * 109.46963 * 309.99934 * 12 10 9 40 40 H 0.97012 * 119.99632 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.47005 * 300.00453 * 16 15 13 42 42 H 1.09004 * 109.46749 * 59.99876 * 16 15 13 43 43 H 0.96995 * 120.00184 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.40269 * 37.01860 * 25 4 2 45 45 H 1.08997 * 110.34799 * 274.67735 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7281 -3.5316 0.0300 7 6 3.9080 -2.7108 0.6143 8 1 3.8586 -2.6760 1.7026 9 6 5.2519 -3.2734 0.1470 10 7 6.3439 -2.5347 0.7948 11 6 7.6021 -2.6985 0.0543 12 6 6.5001 -2.9474 2.1959 13 6 7.4511 -2.0090 2.8931 14 8 7.9493 -1.0869 2.2829 15 7 7.7480 -2.1945 4.1945 16 6 8.6720 -1.2820 4.8724 17 6 8.8323 -1.7054 6.3097 18 1 8.2988 -2.5679 6.6813 19 6 9.6592 -0.9914 7.1507 20 7 10.3084 0.0592 6.6984 21 14 9.8585 -1.5167 8.9322 22 1 10.4013 -2.8980 8.9832 23 1 10.7951 -0.5916 9.6193 24 1 8.5378 -1.4784 9.6101 25 6 3.6485 -1.3119 0.0011 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3632 -0.5138 -0.8900 29 1 0.9784 -2.6444 -0.9003 30 1 0.9465 -2.6309 0.8837 31 1 2.9606 -3.8783 -0.9768 32 1 2.4844 -4.3725 0.6793 33 1 5.3335 -3.1679 -0.9349 34 1 5.3173 -4.3279 0.4151 35 1 7.9545 -3.7246 0.1593 36 1 7.4346 -2.4779 -0.9999 37 1 8.3506 -2.0145 0.4542 38 1 6.8974 -3.9618 2.2337 39 1 5.5307 -2.9182 2.6934 40 1 7.3491 -2.9319 4.6827 41 1 9.6413 -1.3104 4.3745 42 1 8.2740 -0.2679 4.8350 43 1 10.8899 0.5618 7.2901 44 1 4.1064 -0.5372 0.6162 45 1 4.0342 -1.2663 -1.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335695760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:24 Heat of formation + Delta-G solvation = -68.516375 kcal Electronic energy + Delta-G solvation = -24096.829022 eV Core-core repulsion = 20535.227190 eV Total energy + Delta-G solvation = -3561.601833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25243 -39.14061 -37.91170 -36.31134 -34.10357 -32.57070 -32.30925 -30.05987 -29.57193 -28.73428 -26.70391 -26.18546 -23.79899 -22.81132 -21.75095 -20.46310 -19.58616 -19.47006 -17.35030 -17.12705 -16.61611 -15.85115 -15.69653 -15.49187 -15.20782 -14.77622 -14.68890 -14.19989 -14.05947 -13.79653 -13.44418 -13.28297 -13.10083 -12.76345 -12.53129 -12.50926 -12.26960 -12.21341 -12.01891 -11.86210 -11.65168 -11.41571 -11.22465 -11.05212 -10.98641 -10.87146 -10.71945 -10.29553 -10.01097 -9.39417 -8.98780 -8.83058 -8.71156 -8.21830 -7.82598 -6.14855 -4.22017 2.49196 2.82426 3.25778 3.30512 3.32057 3.41633 3.62235 4.16782 4.23138 4.30600 4.41157 4.54117 4.66478 4.81976 4.97565 5.02398 5.09334 5.14049 5.20852 5.25201 5.28397 5.36852 5.38926 5.44593 5.50648 5.54856 5.59530 5.64794 5.69548 5.73450 5.96251 6.01544 6.13711 6.31546 6.94980 7.09501 7.34572 7.35145 7.48177 7.54972 7.69223 7.99391 8.01886 8.66161 8.81120 9.15957 9.44765 10.95326 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002861 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.892612 B = 9783.710272 C =10457.570483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.522 3.478 3 O -0.542 6.542 4 N -0.624 5.624 5 C 0.102 3.898 6 C -0.128 4.128 7 C -0.097 4.097 8 H 0.087 0.913 9 C 0.066 3.934 10 N -0.522 5.522 11 C 0.021 3.979 12 C 0.034 3.966 13 C 0.498 3.502 14 O -0.537 6.537 15 N -0.716 5.716 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.120 3.880 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.389 0.611 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.087 0.913 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.228 -11.865 -14.915 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.311 3.689 3 O -0.419 6.419 4 N -0.360 5.360 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.116 4.116 8 H 0.106 0.894 9 C -0.063 4.063 10 N -0.246 5.246 11 C -0.127 4.127 12 C -0.097 4.097 13 C 0.282 3.718 14 O -0.415 6.415 15 N -0.365 5.365 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.002 4.002 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.221 0.779 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.551 -9.868 -15.298 25.992 hybrid contribution 0.106 -1.586 1.307 2.058 sum -18.445 -11.454 -13.991 25.829 Atomic orbital electron populations 1.21897 0.91620 1.05351 1.03952 1.20485 0.90314 0.82161 0.75956 1.90767 1.70800 1.30608 1.49686 1.48640 1.08037 1.05598 1.73698 1.21999 0.96360 0.82100 1.01622 1.22687 0.94242 0.97428 1.02295 1.22395 0.93685 0.94448 1.01095 0.89436 1.22092 0.89900 0.95176 0.99103 1.61589 1.05944 1.56254 1.00816 1.22574 0.92049 0.99963 0.98071 1.22094 1.00444 0.96927 0.90238 1.20284 0.82669 0.86044 0.82837 1.90632 1.53252 1.32263 1.65326 1.46451 1.47552 1.32627 1.09875 1.19068 0.87930 0.88864 0.91021 1.21189 1.28431 1.13909 0.94709 0.92014 1.24954 0.95192 0.94723 0.99155 1.69966 1.28379 1.17616 1.36285 0.86478 0.78105 0.78434 0.83900 1.20110 1.21063 1.20064 1.22211 0.79213 0.97663 1.01156 0.89531 0.89012 0.89659 0.91419 0.91322 0.90341 0.89805 0.90343 0.94019 0.96295 0.91858 0.88704 0.92453 0.88564 0.77924 0.95651 0.95556 0.92381 0.89450 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 9.51 36.01 0.34 -0.85 16 2 C 0.52 6.32 7.96 -10.98 -0.09 6.23 16 3 O -0.54 -9.41 17.34 5.56 0.10 -9.31 16 4 N -0.62 -6.46 3.33 -170.47 -0.57 -7.03 16 5 C 0.10 0.63 6.49 -3.06 -0.02 0.61 16 6 C -0.13 -0.72 6.42 -24.89 -0.16 -0.88 16 7 C -0.10 -0.85 3.09 -88.46 -0.27 -1.13 16 8 H 0.09 0.86 6.72 -51.93 -0.35 0.51 16 9 C 0.07 0.61 4.46 -3.82 -0.02 0.59 16 10 N -0.52 -6.97 4.36 -244.36 -1.07 -8.04 16 11 C 0.02 0.28 9.19 60.07 0.55 0.83 16 12 C 0.03 0.48 5.27 -4.97 -0.03 0.45 16 13 C 0.50 9.86 7.59 -10.99 -0.08 9.78 16 14 O -0.54 -12.90 14.31 5.56 0.08 -12.82 16 15 N -0.72 -15.02 5.55 -61.48 -0.34 -15.36 16 16 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.12 1.39 6.31 -2.49 -0.02 1.37 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.66 7.58 -51.93 -0.39 0.26 16 34 H 0.04 0.33 8.00 -51.93 -0.42 -0.08 16 35 H 0.02 0.22 8.07 -51.93 -0.42 -0.19 16 36 H 0.06 0.72 7.84 -51.93 -0.41 0.32 16 37 H 0.09 1.62 6.00 -51.93 -0.31 1.31 16 38 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.10 1.16 6.60 -51.93 -0.34 0.81 16 40 H 0.39 6.91 8.32 -40.81 -0.34 6.57 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 45 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -36.01 367.69 -8.33 -44.34 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.56 Total: 2.15 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.23 Total: 10.23 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -1.24 Total: -56.06 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.18 Total: -22.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.01 -8.33 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335695760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.175 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds