Wall clock time and date at job start Tue Mar 31 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00082 * 2 1 4 4 N 1.34779 * 119.99704 * 179.97438 * 2 1 3 5 5 C 1.47020 * 125.64960 * 359.97438 * 4 2 1 6 6 C 1.54328 * 107.26802 * 181.09415 * 5 4 2 7 7 C 1.55155 * 102.94337 * 22.18826 * 6 5 4 8 8 H 1.09004 * 111.00114 * 82.61308 * 7 6 5 9 9 C 1.53002 * 111.00407 * 206.42202 * 7 6 5 10 10 N 1.46897 * 109.47058 * 184.05746 * 9 7 6 11 11 C 1.46905 * 110.99769 * 199.87447 * 10 9 7 12 12 C 1.46904 * 110.99755 * 75.92570 * 10 9 7 13 13 C 1.50702 * 109.47224 * 189.99578 * 12 10 9 14 14 O 1.21282 * 119.99698 * 0.02562 * 13 12 10 15 15 N 1.34768 * 120.00314 * 180.02562 * 13 12 10 16 16 C 1.46497 * 120.00438 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47541 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99748 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00417 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47464 * 59.99449 * 21 19 17 23 23 H 1.48499 * 109.47359 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46783 * 299.99334 * 21 19 17 25 25 C 1.47474 * 125.62499 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47580 * 240.00103 * 1 2 3 27 27 H 1.09005 * 109.46873 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46578 * 119.99910 * 1 2 3 29 29 H 1.08995 * 109.88195 * 61.67780 * 5 4 2 30 30 H 1.08996 * 110.00893 * 300.57996 * 5 4 2 31 31 H 1.09000 * 110.71431 * 263.82285 * 6 5 4 32 32 H 1.09001 * 110.86862 * 140.62790 * 6 5 4 33 33 H 1.09005 * 109.46960 * 64.05901 * 9 7 6 34 34 H 1.09000 * 109.47122 * 304.06470 * 9 7 6 35 35 H 1.08995 * 109.47333 * 290.62516 * 11 10 9 36 36 H 1.09004 * 109.46963 * 50.62763 * 11 10 9 37 37 H 1.09002 * 109.46686 * 170.62408 * 11 10 9 38 38 H 1.09006 * 109.46995 * 69.99550 * 12 10 9 39 39 H 1.08993 * 109.46963 * 309.99934 * 12 10 9 40 40 H 0.97012 * 119.99632 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.47005 * 300.00453 * 16 15 13 42 42 H 1.09004 * 109.46749 * 59.99876 * 16 15 13 43 43 H 0.96995 * 120.00184 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.40269 * 37.01860 * 25 4 2 45 45 H 1.08997 * 110.34799 * 274.67735 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7281 -3.5316 0.0300 7 6 3.9080 -2.7108 0.6143 8 1 3.8586 -2.6760 1.7026 9 6 5.2519 -3.2734 0.1470 10 7 6.3439 -2.5347 0.7948 11 6 7.6021 -2.6985 0.0543 12 6 6.5001 -2.9474 2.1959 13 6 7.4511 -2.0090 2.8931 14 8 7.9493 -1.0869 2.2829 15 7 7.7480 -2.1945 4.1945 16 6 8.6720 -1.2820 4.8724 17 6 8.8323 -1.7054 6.3097 18 1 8.2988 -2.5679 6.6813 19 6 9.6592 -0.9914 7.1507 20 7 10.3084 0.0592 6.6984 21 14 9.8585 -1.5167 8.9322 22 1 10.4013 -2.8980 8.9832 23 1 10.7951 -0.5916 9.6193 24 1 8.5378 -1.4784 9.6101 25 6 3.6485 -1.3119 0.0011 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3632 -0.5138 -0.8900 29 1 0.9784 -2.6444 -0.9003 30 1 0.9465 -2.6309 0.8837 31 1 2.9606 -3.8783 -0.9768 32 1 2.4844 -4.3725 0.6793 33 1 5.3335 -3.1679 -0.9349 34 1 5.3173 -4.3279 0.4151 35 1 7.9545 -3.7246 0.1593 36 1 7.4346 -2.4779 -0.9999 37 1 8.3506 -2.0145 0.4542 38 1 6.8974 -3.9618 2.2337 39 1 5.5307 -2.9182 2.6934 40 1 7.3491 -2.9319 4.6827 41 1 9.6413 -1.3104 4.3745 42 1 8.2740 -0.2679 4.8350 43 1 10.8899 0.5618 7.2901 44 1 4.1064 -0.5372 0.6162 45 1 4.0342 -1.2663 -1.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335695760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:23 Heat of formation + Delta-G solvation = -97.640196 kcal Electronic energy + Delta-G solvation = -24098.091926 eV Core-core repulsion = 20535.227190 eV Total energy + Delta-G solvation = -3562.864736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11562 -40.61012 -38.94094 -37.39812 -36.04979 -34.34746 -33.41969 -30.70983 -30.52627 -30.02778 -28.39631 -27.11357 -24.97598 -24.26824 -22.82852 -21.52389 -20.95718 -20.27799 -18.99562 -18.00978 -17.78481 -17.23412 -17.12517 -16.70866 -16.48766 -16.16948 -15.71351 -15.49001 -15.41076 -14.97146 -14.39370 -14.17215 -14.09948 -14.02367 -13.81432 -13.72732 -13.41620 -13.18634 -13.01657 -12.94108 -12.82212 -12.74568 -12.62799 -12.43119 -12.24450 -12.02696 -11.78960 -11.52184 -11.45025 -10.99191 -10.79536 -10.62553 -9.80709 -9.66390 -9.19427 -8.29652 -6.46986 1.41919 1.46609 1.54819 1.60225 1.82060 2.07549 2.28360 2.48095 3.04914 3.06320 3.56833 3.68764 3.82449 3.94470 3.99786 4.27300 4.30016 4.35660 4.44636 4.46782 4.49908 4.56142 4.62688 4.65787 4.72400 4.77680 4.82584 4.95088 5.01462 5.06489 5.10464 5.16143 5.21459 5.23249 5.30463 5.43754 5.49292 5.70660 5.84634 5.97697 6.19118 6.56387 6.64623 6.96760 7.14431 7.23118 7.56214 8.82534 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002861 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.892612 B = 9783.710272 C =10457.570483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.506 3.494 3 O -0.614 6.614 4 N -0.624 5.624 5 C 0.094 3.906 6 C -0.115 4.115 7 C -0.091 4.091 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.551 5.551 11 C 0.027 3.973 12 C 0.051 3.949 13 C 0.490 3.510 14 O -0.587 6.587 15 N -0.711 5.711 16 C 0.269 3.731 17 C -0.556 4.556 18 H 0.086 0.914 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.286 1.286 24 H -0.261 1.261 25 C 0.115 3.885 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.408 0.592 41 H -0.015 1.015 42 H -0.020 1.020 43 H 0.268 0.732 44 H 0.034 0.966 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.116 -16.241 -14.564 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.297 3.703 3 O -0.496 6.496 4 N -0.357 5.357 5 C -0.027 4.027 6 C -0.153 4.153 7 C -0.110 4.110 8 H 0.097 0.903 9 C -0.057 4.057 10 N -0.276 5.276 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.277 3.723 14 O -0.467 6.467 15 N -0.362 5.362 16 C 0.146 3.854 17 C -0.594 4.594 18 H 0.104 0.896 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.007 4.007 26 H 0.129 0.871 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.244 0.756 41 H 0.003 0.997 42 H -0.002 1.002 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.503 -14.349 -14.965 29.871 hybrid contribution 1.005 -0.191 1.090 1.495 sum -20.499 -14.540 -13.875 28.708 Atomic orbital electron populations 1.21893 0.87349 1.05853 1.06452 1.21532 0.92423 0.81603 0.74713 1.90729 1.72515 1.33220 1.53160 1.48824 1.07619 1.07123 1.72174 1.22372 0.96953 0.79525 1.03832 1.22714 0.91776 0.97269 1.03508 1.22348 0.95164 0.93024 1.00499 0.90286 1.22176 0.88054 0.96094 0.99379 1.61487 1.06927 1.58431 1.00739 1.22418 0.91316 0.99737 0.98649 1.21991 0.99628 0.96091 0.90243 1.21519 0.82528 0.86181 0.82086 1.90621 1.55123 1.34726 1.66252 1.46185 1.46973 1.32388 1.10648 1.18465 0.86976 0.88087 0.91846 1.21604 1.28588 1.14581 0.94627 0.89625 1.26122 0.94520 0.94438 1.04745 1.70147 1.29358 1.19250 1.38416 0.85181 0.78513 0.78419 0.76945 1.18404 1.21206 1.18590 1.22121 0.80322 0.98209 1.00097 0.87109 0.89675 0.86625 0.88808 0.89476 0.88787 0.87139 0.89248 0.91008 0.94377 0.90208 0.93422 0.89140 0.86041 0.75637 0.99701 1.00159 0.92278 0.94773 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.51 71.24 0.68 -1.23 16 2 C 0.51 12.37 7.96 87.66 0.70 13.07 16 3 O -0.61 -23.00 17.34 -3.03 -0.05 -23.05 16 4 N -0.62 -12.31 3.33 -811.64 -2.70 -15.02 16 5 C 0.09 0.78 6.49 86.73 0.56 1.35 16 6 C -0.11 -0.74 6.42 31.78 0.20 -0.54 16 7 C -0.09 -1.37 3.09 -9.40 -0.03 -1.40 16 8 H 0.08 1.35 6.72 -2.38 -0.02 1.34 16 9 C 0.07 1.08 4.46 86.30 0.38 1.46 16 10 N -0.55 -14.17 4.36 -927.02 -4.04 -18.21 16 11 C 0.03 0.71 9.19 127.69 1.17 1.88 16 12 C 0.05 1.33 5.27 85.56 0.45 1.78 16 13 C 0.49 19.98 7.59 87.66 0.66 20.64 16 14 O -0.59 -30.21 14.31 -3.04 -0.04 -30.25 16 15 N -0.71 -30.50 5.55 -466.80 -2.59 -33.09 16 16 C 0.27 15.22 5.43 85.63 0.46 15.69 16 17 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 18 H 0.09 4.22 7.60 -2.91 -0.02 4.19 16 19 C 0.00 0.06 5.46 84.65 0.46 0.53 16 20 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 21 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.12 2.73 6.31 86.85 0.55 3.28 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.17 8.12 -2.38 -0.02 1.15 16 28 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.38 8.04 -2.39 -0.02 0.37 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.09 1.21 7.58 -2.38 -0.02 1.19 16 34 H 0.07 0.75 8.00 -2.39 -0.02 0.73 16 35 H 0.04 0.84 8.07 -2.39 -0.02 0.82 16 36 H 0.08 1.78 7.84 -2.39 -0.02 1.76 16 37 H 0.05 1.72 6.00 -2.39 -0.01 1.71 16 38 H 0.09 1.82 8.07 -2.38 -0.02 1.80 16 39 H 0.12 2.58 6.60 -2.39 -0.02 2.57 16 40 H 0.41 14.10 8.32 -92.70 -0.77 13.32 16 41 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.03 1.15 8.04 -2.38 -0.02 1.13 16 45 H 0.06 1.48 7.92 -2.39 -0.02 1.46 16 Total: -1.00 -88.78 367.69 -0.41 -89.19 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.20 Total: 17.05 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 6.50 Total: 26.00 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -9.05 Total: -123.74 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.10 Total: -53.31 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -88.78 -0.41 -89.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335695760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.450 kcal (2) G-P(sol) polarization free energy of solvation -88.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds