Wall clock time and date at job start Tue Mar 31 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47322 * 2 1 4 4 C 1.52998 * 109.47352 * 120.00167 * 2 1 3 5 5 N 1.46497 * 109.47453 * 174.99899 * 4 2 1 6 6 C 1.34777 * 120.00364 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99768 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47181 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.60219 * 54.67198 * 9 8 6 11 11 C 1.53344 * 109.60455 * 174.99916 * 9 8 6 12 12 C 1.53077 * 108.42453 * 187.28660 * 11 9 8 13 13 C 1.50171 * 109.89220 * 311.10318 * 12 11 9 14 14 O 1.21283 * 118.24821 * 197.56178 * 13 12 11 15 15 N 1.33360 * 123.51186 * 17.57693 * 13 12 11 16 16 C 1.45755 * 124.10225 * 357.78244 * 15 13 12 17 17 N 1.46508 * 109.47165 * 240.00100 * 2 1 3 18 18 C 1.46500 * 119.99749 * 300.00146 * 17 2 1 19 19 C 1.36940 * 119.99865 * 119.99583 * 17 2 1 20 20 H 1.07996 * 120.00331 * 327.91662 * 19 17 2 21 21 C 1.38814 * 119.99343 * 147.91297 * 19 17 2 22 22 N 1.31623 * 119.99848 * 152.74523 * 21 19 17 23 23 Si 1.86802 * 120.00373 * 332.73641 * 21 19 17 24 24 H 1.48501 * 109.47055 * 95.39334 * 23 21 19 25 25 H 1.48501 * 109.47333 * 215.39799 * 23 21 19 26 26 H 1.48500 * 109.46953 * 335.39352 * 23 21 19 27 27 H 1.09004 * 109.46737 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.46901 * 299.99740 * 1 2 3 29 29 H 1.09000 * 109.46745 * 60.00178 * 1 2 3 30 30 H 1.09007 * 109.47092 * 54.99800 * 4 2 1 31 31 H 1.08991 * 109.47131 * 295.00156 * 4 2 1 32 32 H 0.97009 * 119.99732 * 359.97438 * 5 4 2 33 33 H 1.08998 * 109.47041 * 299.99636 * 8 6 5 34 34 H 1.08998 * 109.47374 * 59.99599 * 8 6 5 35 35 H 1.09000 * 109.67153 * 307.01725 * 11 9 8 36 36 H 1.09000 * 109.67210 * 67.51960 * 11 9 8 37 37 H 1.09001 * 109.39662 * 71.22979 * 12 11 9 38 38 H 1.08992 * 109.40121 * 190.96832 * 12 11 9 39 39 H 0.96988 * 117.94720 * 177.77919 * 15 13 12 40 40 H 1.08997 * 109.30141 * 258.76050 * 16 15 13 41 41 H 1.09004 * 109.29809 * 139.38412 * 16 15 13 42 42 H 1.09001 * 109.47004 * 95.17530 * 18 17 2 43 43 H 1.09002 * 109.46851 * 215.16882 * 18 17 2 44 44 H 1.08994 * 109.47217 * 335.17122 * 18 17 2 45 45 H 0.96995 * 119.99981 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5700 -1.8842 3.1393 8 6 5.6750 -1.5369 2.1305 9 6 6.1851 -2.2582 3.3796 10 1 5.6807 -3.2196 3.4783 11 6 7.6979 -2.4804 3.2638 12 6 8.1487 -3.3596 4.4330 13 6 7.5977 -2.8188 5.7210 14 8 8.1044 -3.1843 6.7605 15 7 6.5806 -1.9584 5.7831 16 6 5.9092 -1.4011 4.6156 17 7 2.0184 -0.6906 -1.1962 18 6 1.6644 -2.0932 -1.4281 19 6 2.8056 -0.0250 -2.0977 20 1 2.6684 1.0345 -2.2556 21 6 3.7800 -0.7123 -2.8084 22 7 4.1576 -0.2810 -3.9932 23 14 4.5556 -2.2492 -2.0832 24 1 3.8489 -3.4500 -2.5971 25 1 5.9871 -2.3126 -2.4733 26 1 4.4475 -2.2069 -0.6028 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7199 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9824 -0.4628 0.4314 33 1 5.9637 -2.0991 1.2424 34 1 6.1094 -0.5382 2.0852 35 1 7.9245 -2.9788 2.3212 36 1 8.2139 -1.5211 3.3050 37 1 7.7857 -4.3763 4.2824 38 1 9.2376 -3.3686 4.4804 39 1 6.2682 -1.6866 6.6601 40 1 6.2726 -0.3886 4.4402 41 1 4.8352 -1.3685 4.7991 42 1 0.7896 -2.1448 -2.0762 43 1 2.5005 -2.6048 -1.9049 44 1 1.4399 -2.5734 -0.4757 45 1 4.8387 -0.7610 -4.4897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485315980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:39 Heat of formation + Delta-G solvation = -82.292840 kcal Electronic energy + Delta-G solvation = -25140.081235 eV Core-core repulsion = 21577.882010 eV Total energy + Delta-G solvation = -3562.199225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49941 -40.57136 -38.67817 -37.61994 -35.29622 -34.42275 -33.89939 -32.42791 -31.75682 -28.45268 -28.03496 -26.47521 -25.34757 -24.93877 -23.01058 -21.31442 -20.80883 -20.03128 -18.91116 -18.23822 -17.99713 -17.44282 -17.13936 -16.98779 -16.50033 -16.39588 -15.79107 -15.52376 -14.99176 -14.82536 -14.57749 -14.40705 -14.33358 -14.12132 -13.96860 -13.86393 -13.63752 -13.43327 -12.98426 -12.69489 -12.54170 -12.43434 -12.25008 -12.18605 -11.99826 -11.94687 -11.80005 -11.65196 -11.36509 -10.87019 -10.68210 -10.55230 -10.08605 -9.81620 -8.84573 -8.15034 -5.45490 1.40116 1.46410 1.58590 1.60489 1.75244 2.33128 2.41731 2.50193 3.04766 3.39467 3.54215 3.66894 3.73638 3.80711 4.02916 4.10645 4.34902 4.37047 4.44779 4.50338 4.54142 4.58633 4.62576 4.73881 4.75309 4.79140 4.81933 4.89136 4.93781 4.95181 5.03809 5.05946 5.15391 5.30393 5.33194 5.43755 5.65793 5.77311 5.95379 6.22738 6.32289 6.71474 6.98553 7.16475 7.35668 7.68461 8.09508 9.04396 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.004113 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.903989 B = 6806.107791 C = 7812.110415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.110 3.890 5 N -0.714 5.714 6 C 0.505 3.495 7 O -0.581 6.581 8 C -0.136 4.136 9 C -0.083 4.083 10 H 0.073 0.927 11 C -0.115 4.115 12 C -0.130 4.130 13 C 0.512 3.488 14 O -0.614 6.614 15 N -0.710 5.710 16 C 0.112 3.888 17 N -0.609 5.609 18 C 0.113 3.887 19 C -0.258 4.258 20 H 0.046 0.954 21 C -0.018 4.018 22 N -0.945 5.945 23 Si 0.939 3.061 24 H -0.302 1.302 25 H -0.314 1.314 26 H -0.224 1.224 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.400 0.600 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -1.870 13.638 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.091 0.909 4 C -0.015 4.015 5 N -0.365 5.365 6 C 0.293 3.707 7 O -0.463 6.463 8 C -0.176 4.176 9 C -0.102 4.102 10 H 0.091 0.909 11 C -0.152 4.152 12 C -0.170 4.170 13 C 0.301 3.699 14 O -0.498 6.498 15 N -0.359 5.359 16 C -0.012 4.012 17 N -0.333 5.333 18 C -0.031 4.031 19 C -0.388 4.388 20 H 0.064 0.936 21 C -0.215 4.215 22 N -0.589 5.589 23 Si 0.769 3.231 24 H -0.232 1.232 25 H -0.243 1.243 26 H -0.147 1.147 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.235 0.765 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.007 -2.413 14.457 14.962 hybrid contribution 0.242 -0.427 -0.483 0.689 sum 3.249 -2.840 13.974 14.625 Atomic orbital electron populations 1.22057 0.95016 1.01913 1.01906 1.20895 0.94190 0.95831 0.84056 0.90906 1.21834 0.80242 1.00609 0.98857 1.46218 1.08341 1.58448 1.23449 1.21083 0.91163 0.76877 0.81610 1.90616 1.71360 1.49750 1.34528 1.21788 0.90590 1.05020 1.00167 1.21136 0.96856 0.99448 0.92795 0.90868 1.21764 0.93461 1.01285 0.98734 1.21654 1.03416 1.01479 0.90434 1.20796 0.79067 0.77900 0.92134 1.90722 1.60803 1.61069 1.37185 1.45509 1.33834 1.45457 1.11059 1.21665 0.98196 0.96944 0.84396 1.44155 1.57826 1.09119 1.22216 1.21272 0.97438 0.85486 0.98903 1.18667 1.10899 0.94054 1.15135 0.93580 1.25924 0.98385 1.01246 0.95966 1.70078 1.33105 1.44004 1.11718 0.86078 0.75636 0.79358 0.82042 1.23192 1.24295 1.14697 0.92817 0.90362 0.93444 0.92941 0.90694 0.75417 0.87647 0.86017 0.88471 0.89538 0.87456 0.86908 0.76473 0.90112 0.89853 0.96639 0.96057 0.92242 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.20 71.98 0.66 -3.36 16 2 C 0.16 4.96 2.87 44.99 0.13 5.09 16 3 H 0.07 2.38 7.89 -2.39 -0.02 2.36 16 4 C 0.11 3.17 4.93 86.38 0.43 3.60 16 5 N -0.71 -20.85 4.54 -463.08 -2.10 -22.96 16 6 C 0.50 13.65 7.59 87.66 0.67 14.32 16 7 O -0.58 -18.39 14.06 -3.02 -0.04 -18.43 16 8 C -0.14 -2.63 5.17 29.85 0.15 -2.48 16 9 C -0.08 -1.49 1.89 -10.70 -0.02 -1.51 16 10 H 0.07 1.58 7.93 -2.38 -0.02 1.56 16 11 C -0.11 -1.56 5.33 30.74 0.16 -1.39 16 12 C -0.13 -2.13 6.03 29.71 0.18 -1.95 16 13 C 0.51 11.99 7.71 87.71 0.68 12.67 16 14 O -0.61 -19.70 17.78 -3.04 -0.05 -19.75 16 15 N -0.71 -14.21 5.45 -467.30 -2.55 -16.76 16 16 C 0.11 2.02 6.12 86.49 0.53 2.55 16 17 N -0.61 -24.34 1.93 -702.77 -1.35 -25.70 16 18 C 0.11 4.36 8.77 127.77 1.12 5.48 16 19 C -0.26 -12.77 9.57 84.03 0.80 -11.97 16 20 H 0.05 2.56 8.06 -2.91 -0.02 2.53 16 21 C -0.02 -0.96 5.27 84.86 0.45 -0.51 16 22 N -0.95 -54.70 13.97 21.65 0.30 -54.40 16 23 Si 0.94 40.03 24.74 68.60 1.70 41.72 16 24 H -0.30 -13.51 6.62 99.48 0.66 -12.85 16 25 H -0.31 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.22 -8.04 5.40 99.48 0.54 -7.50 16 27 H 0.05 1.41 7.67 -2.39 -0.02 1.39 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.59 6.87 -2.38 -0.02 1.58 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 12.82 6.71 -92.70 -0.62 12.20 16 33 H 0.11 2.02 8.11 -2.39 -0.02 2.00 16 34 H 0.12 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.40 7.56 8.80 -92.72 -0.82 6.74 16 40 H 0.08 1.19 8.08 -2.39 -0.02 1.18 16 41 H 0.08 1.83 6.23 -2.39 -0.01 1.81 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.02 0.90 2.75 -2.39 -0.01 0.89 16 44 H 0.06 1.97 6.53 -2.39 -0.02 1.96 16 45 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.95 349.19 1.18 -66.76 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.65 Total: 28.96 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 5.94 Total: 20.55 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -5.70 Total: -119.81 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.10 Total: -38.18 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.70 Total: 41.72 kcal Total: -67.95 1.18 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485315980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.528 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds