Wall clock time and date at job start Tue Mar 31 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46989 * 2 1 4 4 C 1.46757 * 124.35085 * 89.99816 * 3 2 1 5 5 C 1.54479 * 105.47259 * 197.01814 * 4 3 2 6 6 H 1.09004 * 110.97294 * 92.70389 * 5 4 3 7 7 C 1.50699 * 110.97094 * 216.46333 * 5 4 3 8 8 O 1.21283 * 120.00195 * 20.24221 * 7 5 4 9 9 N 1.34777 * 120.00671 * 200.24307 * 7 5 4 10 10 C 1.46505 * 119.99473 * 4.84780 * 9 7 5 11 11 C 1.46496 * 120.00420 * 184.85060 * 9 7 5 12 12 C 1.52996 * 109.47077 * 90.00027 * 11 9 7 13 13 H 1.08998 * 109.47320 * 294.99770 * 12 11 9 14 14 C 1.53007 * 109.47017 * 175.00042 * 12 11 9 15 15 N 1.46497 * 109.47588 * 55.00248 * 12 11 9 16 16 C 1.36935 * 120.00114 * 205.00444 * 15 12 11 17 17 H 1.08005 * 120.00262 * 359.97438 * 16 15 12 18 18 C 1.38813 * 120.00278 * 179.97438 * 16 15 12 19 19 N 1.31621 * 119.99644 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47050 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47382 * 119.99712 * 20 18 16 23 23 H 1.48506 * 109.47023 * 239.99785 * 20 18 16 24 24 C 1.54622 * 101.76744 * 334.58214 * 5 4 3 25 25 C 1.34655 * 124.31365 * 269.87069 * 3 2 1 26 26 O 1.21280 * 125.07017 * 359.64540 * 25 3 2 27 27 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47269 * 300.00549 * 1 2 3 29 29 H 1.08996 * 109.46622 * 60.00534 * 1 2 3 30 30 H 1.09000 * 109.47269 * 239.99451 * 2 1 3 31 31 H 1.09003 * 109.46509 * 119.99090 * 2 1 3 32 32 H 1.08999 * 110.25099 * 78.01683 * 4 3 2 33 33 H 1.08998 * 110.32095 * 316.05259 * 4 3 2 34 34 H 1.08999 * 109.47102 * 84.55987 * 10 9 7 35 35 H 1.08999 * 109.46851 * 204.55791 * 10 9 7 36 36 H 1.09002 * 109.47206 * 324.55816 * 10 9 7 37 37 H 1.09005 * 109.46865 * 209.99591 * 11 9 7 38 38 H 1.08990 * 109.47158 * 329.99629 * 11 9 7 39 39 H 1.08998 * 109.46955 * 59.99466 * 14 12 11 40 40 H 1.08999 * 109.46960 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47232 * 299.99672 * 14 12 11 42 42 H 0.97003 * 119.99753 * 24.99208 * 15 12 11 43 43 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.49194 * 143.47502 * 24 5 4 45 45 H 1.09004 * 110.49125 * 265.98921 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3528 3.6346 0.7486 6 1 1.3780 4.1127 0.8446 7 6 3.4035 4.3988 1.5122 8 8 4.2968 3.8030 2.0760 9 7 3.3505 5.7443 1.5686 10 6 2.2152 6.4580 0.9788 11 6 4.4282 6.4932 2.2197 12 6 5.5068 6.8343 1.1896 13 1 5.9702 5.9153 0.8309 14 6 6.5703 7.7217 1.8396 15 7 4.8985 7.5465 0.0632 16 6 5.4928 7.5119 -1.1700 17 1 6.4101 6.9600 -1.3122 18 6 4.9161 8.1863 -2.2376 19 7 3.7979 8.8586 -2.0645 20 14 5.7272 8.1398 -3.9196 21 1 6.9649 7.3224 -3.8499 22 1 4.7915 7.5390 -4.9039 23 1 6.0701 9.5215 -4.3422 24 6 2.7504 3.4822 -0.7379 25 6 2.2738 2.0961 -1.1122 26 8 2.1396 1.6906 -2.2473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.2500 1.8640 1.6429 33 1 1.4942 2.0270 1.9394 34 1 1.3955 6.4930 1.6965 35 1 2.5176 7.4734 0.7229 36 1 1.8876 5.9385 0.0782 37 1 4.0264 7.4136 2.6435 38 1 4.8633 5.8871 3.0142 39 1 7.0229 7.1919 2.6777 40 1 7.3389 7.9644 1.1058 41 1 6.1069 8.6408 2.1983 42 1 4.0747 8.0424 0.1909 43 1 3.3947 9.3296 -2.8105 44 1 2.2491 4.2351 -1.3461 45 1 3.8316 3.5579 -0.8534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485882769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:47 Heat of formation + Delta-G solvation = -53.034604 kcal Electronic energy + Delta-G solvation = -25445.159515 eV Core-core repulsion = 21884.229022 eV Total energy + Delta-G solvation = -3560.930493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82285 -39.26803 -36.65105 -36.06910 -34.39086 -33.82809 -32.05803 -29.90951 -28.84297 -27.75814 -26.88539 -25.86291 -23.94449 -23.43648 -22.35985 -20.20736 -19.40303 -18.78438 -17.48552 -17.22387 -16.81691 -15.94374 -15.80395 -15.21201 -14.89592 -14.61927 -14.04806 -13.91780 -13.80762 -13.65979 -13.38985 -13.21863 -13.08606 -12.61055 -12.38060 -12.29188 -12.14497 -12.09022 -11.81814 -11.47645 -11.44007 -11.32166 -11.30839 -11.16174 -10.87088 -10.71800 -10.41152 -10.04775 -9.93901 -9.67541 -9.46469 -8.95984 -8.77762 -8.24794 -6.98204 -5.81090 -3.07946 2.58406 2.74923 2.88728 3.30680 3.42801 3.50517 3.50877 4.25100 4.42438 4.58086 4.64907 4.81297 4.93065 5.00688 5.09010 5.17453 5.35384 5.44750 5.48455 5.51200 5.52808 5.59285 5.64999 5.67091 5.77981 5.83975 5.85851 5.94521 5.97757 6.08485 6.23277 6.25134 6.30993 6.47292 6.64679 6.74589 6.82437 7.03463 7.10266 7.64667 7.71160 8.17348 8.36865 8.39213 9.50416 10.05281 10.41033 11.41796 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004915 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.630243 B = 5695.156823 C = 6965.823907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.623 5.623 4 C 0.118 3.882 5 C -0.122 4.122 6 H 0.110 0.890 7 C 0.529 3.471 8 O -0.547 6.547 9 N -0.589 5.589 10 C 0.080 3.920 11 C 0.109 3.891 12 C 0.154 3.846 13 H 0.050 0.950 14 C -0.162 4.162 15 N -0.720 5.720 16 C -0.232 4.232 17 H 0.068 0.932 18 C -0.011 4.011 19 N -0.935 5.935 20 Si 0.901 3.099 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.293 1.293 24 C -0.137 4.137 25 C 0.523 3.477 26 O -0.530 6.530 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.381 0.619 43 H 0.254 0.746 44 H 0.114 0.886 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -11.467 10.698 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.358 5.358 4 C -0.006 4.006 5 C -0.144 4.144 6 H 0.128 0.872 7 C 0.315 3.685 8 O -0.425 6.425 9 N -0.319 5.319 10 C -0.063 4.063 11 C -0.014 4.014 12 C 0.044 3.956 13 H 0.068 0.932 14 C -0.223 4.223 15 N -0.363 5.363 16 C -0.363 4.363 17 H 0.086 0.914 18 C -0.207 4.207 19 N -0.584 5.584 20 Si 0.733 3.267 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.220 1.220 24 C -0.178 4.178 25 C 0.312 3.688 26 O -0.406 6.406 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.132 0.868 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.876 -12.088 10.243 17.272 hybrid contribution 0.103 0.465 -0.996 1.104 sum -6.773 -11.623 9.247 16.324 Atomic orbital electron populations 1.22166 0.95853 1.02206 1.02529 1.21315 0.94254 0.81258 1.03132 1.48395 1.66268 1.13859 1.07254 1.21990 1.03048 0.88563 0.86965 1.22192 1.00294 0.95984 0.95917 0.87211 1.19900 0.85865 0.82382 0.80311 1.90659 1.36975 1.68390 1.46503 1.47551 1.22851 1.05256 1.56276 1.21917 0.87331 0.99749 0.97319 1.21888 0.88445 0.95452 0.95642 1.20656 0.91810 0.94744 0.88417 0.93165 1.22373 1.00286 1.00028 0.99638 1.42464 1.28714 1.60001 1.05158 1.19258 1.05171 1.25579 0.86315 0.91370 1.24638 0.97648 1.00514 0.97857 1.69628 1.20091 1.37788 1.30864 0.86200 0.78579 0.77125 0.84829 1.20660 1.21836 1.21979 1.22261 1.05157 0.95940 0.94424 1.20915 0.75994 0.87645 0.84287 1.90718 1.53316 1.75578 1.20968 0.91521 0.92414 0.92166 0.90042 0.90355 0.88930 0.90240 0.93450 0.88989 0.91180 0.90847 0.89992 0.94312 0.92546 0.93451 0.78381 0.93639 0.86789 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.12 1.19 6.66 -4.04 -0.03 1.16 16 3 N -0.62 -7.58 2.94 -172.35 -0.51 -8.09 16 4 C 0.12 1.29 6.84 -3.13 -0.02 1.27 16 5 C -0.12 -1.50 2.52 -90.14 -0.23 -1.73 16 6 H 0.11 1.11 6.95 -51.93 -0.36 0.75 16 7 C 0.53 8.06 6.80 -10.99 -0.07 7.99 16 8 O -0.55 -9.74 15.15 5.55 0.08 -9.66 16 9 N -0.59 -8.97 2.73 -181.58 -0.50 -9.46 16 10 C 0.08 1.11 9.38 59.85 0.56 1.67 16 11 C 0.11 1.72 5.06 -4.05 -0.02 1.70 16 12 C 0.15 2.96 3.20 -67.93 -0.22 2.74 16 13 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 14 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 15 N -0.72 -16.53 4.57 -53.43 -0.24 -16.77 16 16 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 17 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 20 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 C -0.14 -2.00 6.15 -26.75 -0.16 -2.17 16 25 C 0.52 8.05 8.03 -10.76 -0.09 7.96 16 26 O -0.53 -10.05 17.60 5.56 0.10 -9.95 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.14 6.86 -51.93 -0.36 0.78 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.51 5.77 -51.93 -0.30 1.21 16 36 H 0.07 0.97 6.12 -51.93 -0.32 0.65 16 37 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 38 H 0.08 1.26 7.36 -51.93 -0.38 0.87 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.38 8.94 5.40 -40.82 -0.22 8.72 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.11 1.67 7.72 -51.93 -0.40 1.27 16 45 H 0.11 1.86 7.89 -51.93 -0.41 1.45 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -32.20 364.29 -7.01 -39.21 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.35 Total: 7.38 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 0.21 Total: 10.39 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.52 Total: -59.97 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.20 -7.01 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485882769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds