Wall clock time and date at job start Tue Mar 31 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46989 * 2 1 4 4 C 1.46757 * 124.35085 * 89.99816 * 3 2 1 5 5 C 1.54479 * 105.47259 * 197.01814 * 4 3 2 6 6 H 1.09004 * 110.97294 * 92.70389 * 5 4 3 7 7 C 1.50699 * 110.97094 * 216.46333 * 5 4 3 8 8 O 1.21283 * 120.00195 * 20.24221 * 7 5 4 9 9 N 1.34777 * 120.00671 * 200.24307 * 7 5 4 10 10 C 1.46505 * 119.99473 * 4.84780 * 9 7 5 11 11 C 1.46496 * 120.00420 * 184.85060 * 9 7 5 12 12 C 1.52996 * 109.47077 * 90.00027 * 11 9 7 13 13 H 1.08998 * 109.47320 * 294.99770 * 12 11 9 14 14 C 1.53007 * 109.47017 * 175.00042 * 12 11 9 15 15 N 1.46497 * 109.47588 * 55.00248 * 12 11 9 16 16 C 1.36935 * 120.00114 * 205.00444 * 15 12 11 17 17 H 1.08005 * 120.00262 * 359.97438 * 16 15 12 18 18 C 1.38813 * 120.00278 * 179.97438 * 16 15 12 19 19 N 1.31621 * 119.99644 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47050 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47382 * 119.99712 * 20 18 16 23 23 H 1.48506 * 109.47023 * 239.99785 * 20 18 16 24 24 C 1.54622 * 101.76744 * 334.58214 * 5 4 3 25 25 C 1.34655 * 124.31365 * 269.87069 * 3 2 1 26 26 O 1.21280 * 125.07017 * 359.64540 * 25 3 2 27 27 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47269 * 300.00549 * 1 2 3 29 29 H 1.08996 * 109.46622 * 60.00534 * 1 2 3 30 30 H 1.09000 * 109.47269 * 239.99451 * 2 1 3 31 31 H 1.09003 * 109.46509 * 119.99090 * 2 1 3 32 32 H 1.08999 * 110.25099 * 78.01683 * 4 3 2 33 33 H 1.08998 * 110.32095 * 316.05259 * 4 3 2 34 34 H 1.08999 * 109.47102 * 84.55987 * 10 9 7 35 35 H 1.08999 * 109.46851 * 204.55791 * 10 9 7 36 36 H 1.09002 * 109.47206 * 324.55816 * 10 9 7 37 37 H 1.09005 * 109.46865 * 209.99591 * 11 9 7 38 38 H 1.08990 * 109.47158 * 329.99629 * 11 9 7 39 39 H 1.08998 * 109.46955 * 59.99466 * 14 12 11 40 40 H 1.08999 * 109.46960 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47232 * 299.99672 * 14 12 11 42 42 H 0.97003 * 119.99753 * 24.99208 * 15 12 11 43 43 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.49194 * 143.47502 * 24 5 4 45 45 H 1.09004 * 110.49125 * 265.98921 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3528 3.6346 0.7486 6 1 1.3780 4.1127 0.8446 7 6 3.4035 4.3988 1.5122 8 8 4.2968 3.8030 2.0760 9 7 3.3505 5.7443 1.5686 10 6 2.2152 6.4580 0.9788 11 6 4.4282 6.4932 2.2197 12 6 5.5068 6.8343 1.1896 13 1 5.9702 5.9153 0.8309 14 6 6.5703 7.7217 1.8396 15 7 4.8985 7.5465 0.0632 16 6 5.4928 7.5119 -1.1700 17 1 6.4101 6.9600 -1.3122 18 6 4.9161 8.1863 -2.2376 19 7 3.7979 8.8586 -2.0645 20 14 5.7272 8.1398 -3.9196 21 1 6.9649 7.3224 -3.8499 22 1 4.7915 7.5390 -4.9039 23 1 6.0701 9.5215 -4.3422 24 6 2.7504 3.4822 -0.7379 25 6 2.2738 2.0961 -1.1122 26 8 2.1396 1.6906 -2.2473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.2500 1.8640 1.6429 33 1 1.4942 2.0270 1.9394 34 1 1.3955 6.4930 1.6965 35 1 2.5176 7.4734 0.7229 36 1 1.8876 5.9385 0.0782 37 1 4.0264 7.4136 2.6435 38 1 4.8633 5.8871 3.0142 39 1 7.0229 7.1919 2.6777 40 1 7.3389 7.9644 1.1058 41 1 6.1069 8.6408 2.1983 42 1 4.0747 8.0424 0.1909 43 1 3.3947 9.3296 -2.8105 44 1 2.2491 4.2351 -1.3461 45 1 3.8316 3.5579 -0.8534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485882769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:46 Heat of formation + Delta-G solvation = -73.943025 kcal Electronic energy + Delta-G solvation = -25446.066172 eV Core-core repulsion = 21884.229022 eV Total energy + Delta-G solvation = -3561.837150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96103 -40.50079 -38.06416 -37.34724 -35.82626 -34.89077 -33.84247 -30.99308 -30.48812 -28.88067 -28.12547 -27.08542 -25.69646 -24.50735 -23.47732 -21.71295 -20.49743 -20.01145 -19.25098 -18.55161 -17.89564 -17.20376 -16.94141 -16.62710 -16.28127 -16.10922 -15.53137 -15.29260 -14.94291 -14.76285 -14.67833 -14.52429 -14.19575 -13.82258 -13.68129 -13.61535 -13.37618 -13.17999 -13.04862 -12.85925 -12.81472 -12.67099 -12.50310 -12.47546 -12.35642 -12.15520 -12.00123 -11.83063 -11.60424 -11.15854 -10.97509 -10.70285 -9.78920 -9.52882 -8.91678 -7.91643 -5.15484 1.37362 1.44433 1.48129 1.54060 1.54213 1.87116 2.16812 2.56987 3.14831 3.39223 3.43364 3.60035 3.82277 3.90829 4.04327 4.12604 4.16470 4.24752 4.34238 4.47189 4.47607 4.53823 4.55429 4.67222 4.71535 4.73783 4.77781 4.82973 4.89699 4.94744 4.95566 5.03661 5.22166 5.28635 5.28895 5.41269 5.54707 5.55912 5.70332 5.96388 6.31965 6.46818 7.01640 7.16284 7.40867 8.13967 8.42270 9.30872 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004915 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.630243 B = 5695.156823 C = 6965.823907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.612 5.612 4 C 0.122 3.878 5 C -0.111 4.111 6 H 0.141 0.859 7 C 0.526 3.474 8 O -0.574 6.574 9 N -0.593 5.593 10 C 0.082 3.918 11 C 0.116 3.884 12 C 0.151 3.849 13 H 0.022 0.978 14 C -0.154 4.154 15 N -0.723 5.723 16 C -0.229 4.229 17 H 0.058 0.942 18 C -0.058 4.058 19 N -0.956 5.956 20 Si 0.950 3.050 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.294 1.294 24 C -0.136 4.136 25 C 0.518 3.482 26 O -0.575 6.575 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.055 0.945 42 H 0.379 0.621 43 H 0.250 0.750 44 H 0.108 0.892 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -12.182 12.869 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.345 5.345 4 C -0.001 4.001 5 C -0.133 4.133 6 H 0.159 0.841 7 C 0.314 3.686 8 O -0.455 6.455 9 N -0.322 5.322 10 C -0.061 4.061 11 C -0.008 4.008 12 C 0.042 3.958 13 H 0.040 0.960 14 C -0.214 4.214 15 N -0.366 5.366 16 C -0.362 4.362 17 H 0.076 0.924 18 C -0.251 4.251 19 N -0.607 5.607 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.221 1.221 24 C -0.177 4.177 25 C 0.306 3.694 26 O -0.455 6.455 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.214 0.786 43 H 0.059 0.941 44 H 0.126 0.874 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.022 -12.821 12.476 19.605 hybrid contribution 0.523 0.638 -1.597 1.797 sum -7.499 -12.183 10.879 17.972 Atomic orbital electron populations 1.22109 0.94434 1.03468 1.02000 1.21598 0.95397 0.79783 1.03907 1.48509 1.64676 1.14674 1.06650 1.22097 1.04087 0.87112 0.86795 1.22201 1.00623 0.96987 0.93445 0.84140 1.20311 0.85982 0.82380 0.79943 1.90645 1.38163 1.68908 1.47779 1.47666 1.23016 1.05463 1.56072 1.21965 0.87819 0.97868 0.98447 1.21784 0.87801 0.96646 0.94544 1.20800 0.93289 0.93408 0.88303 0.95996 1.22228 0.99094 1.00273 0.99818 1.42522 1.28678 1.60247 1.05169 1.19414 1.04591 1.24332 0.87822 0.92362 1.25150 0.98483 1.01251 1.00247 1.69720 1.21004 1.38783 1.31155 0.85422 0.77785 0.76771 0.81895 1.20343 1.22400 1.22082 1.22143 1.03385 0.95823 0.96311 1.21000 0.75897 0.88103 0.84383 1.90685 1.55578 1.76454 1.22812 0.89442 0.90948 0.94559 0.91564 0.87318 0.89964 0.86275 0.89403 0.91596 0.91444 0.88766 0.89092 0.91397 0.94792 0.92623 0.78564 0.94118 0.87376 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.11 1.99 6.66 86.38 0.58 2.56 16 3 N -0.61 -13.97 2.94 -817.64 -2.40 -16.37 16 4 C 0.12 2.35 6.84 86.83 0.59 2.94 16 5 C -0.11 -2.53 2.52 -10.49 -0.03 -2.56 16 6 H 0.14 2.36 6.95 -2.38 -0.02 2.35 16 7 C 0.53 15.26 6.80 87.66 0.60 15.86 16 8 O -0.57 -19.84 15.15 -3.04 -0.05 -19.89 16 9 N -0.59 -17.06 2.73 -846.77 -2.31 -19.37 16 10 C 0.08 2.11 9.38 127.77 1.20 3.30 16 11 C 0.12 3.44 5.06 86.38 0.44 3.88 16 12 C 0.15 5.74 3.20 44.99 0.14 5.88 16 13 H 0.02 0.95 8.08 -2.39 -0.02 0.93 16 14 C -0.15 -5.18 9.49 71.98 0.68 -4.49 16 15 N -0.72 -33.29 4.57 -322.94 -1.47 -34.76 16 16 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 17 H 0.06 3.19 7.83 -2.91 -0.02 3.16 16 18 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 19 N -0.96 -54.36 13.06 21.65 0.28 -54.08 16 20 Si 0.95 46.09 29.55 68.60 2.03 48.12 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 C -0.14 -4.01 6.15 30.58 0.19 -3.82 16 25 C 0.52 16.04 8.03 87.86 0.71 16.74 16 26 O -0.58 -22.57 17.60 -3.03 -0.05 -22.62 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.38 7.93 -2.39 -0.02 1.36 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.85 6.86 -2.39 -0.02 1.83 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.10 5.77 -2.39 -0.01 2.08 16 36 H 0.07 1.77 6.12 -2.39 -0.01 1.75 16 37 H 0.09 2.44 8.07 -2.38 -0.02 2.42 16 38 H 0.09 2.59 7.36 -2.39 -0.02 2.57 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.38 17.80 5.40 -92.71 -0.50 17.30 16 43 H 0.25 13.98 8.31 -92.71 -0.77 13.20 16 44 H 0.11 3.26 7.72 -2.39 -0.02 3.25 16 45 H 0.09 3.02 7.89 -2.39 -0.02 3.00 16 Total: -1.00 -71.20 364.29 3.63 -67.57 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.48 Total: 26.88 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 7.13 Total: 24.52 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -5.90 Total: -124.58 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.10 Total: -42.51 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -71.20 3.63 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485882769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.374 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds