Wall clock time and date at job start Tue Mar 31 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 119.99606 * 2 1 4 4 N 1.34773 * 119.99948 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00163 * 0.02562 * 4 2 1 6 6 C 1.46501 * 119.99727 * 179.97438 * 4 2 1 7 7 C 1.50708 * 109.46963 * 90.00123 * 6 4 2 8 8 O 1.21277 * 119.99454 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99859 * 179.97438 * 7 6 4 10 10 C 1.48377 * 127.17363 * 359.79658 * 9 7 6 11 11 C 1.54941 * 103.37625 * 219.23685 * 10 9 7 12 12 H 1.09002 * 110.73789 * 81.06128 * 11 10 9 13 13 N 1.46500 * 110.74150 * 204.38905 * 11 10 9 14 14 C 1.36936 * 119.99987 * 268.41964 * 13 11 10 15 15 H 1.08004 * 119.99840 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00225 * 179.97438 * 14 13 11 17 17 N 1.31622 * 119.99978 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99736 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47358 * 90.00130 * 18 16 14 20 20 H 1.48499 * 109.47080 * 209.99933 * 18 16 14 21 21 H 1.48497 * 109.47264 * 329.99945 * 18 16 14 22 22 C 1.54616 * 102.83624 * 322.72418 * 11 10 9 23 23 C 1.52999 * 110.32768 * 262.95516 * 22 11 10 24 24 C 1.53001 * 110.32548 * 140.74040 * 22 11 10 25 25 C 1.47485 * 127.02912 * 180.02562 * 9 7 6 26 26 H 1.09003 * 109.47191 * 239.99853 * 1 2 3 27 27 H 1.09004 * 109.47563 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46831 * 120.00005 * 1 2 3 29 29 H 1.08996 * 109.47008 * 269.99641 * 5 4 2 30 30 H 1.09004 * 109.46867 * 29.99806 * 5 4 2 31 31 H 1.08998 * 109.47263 * 149.99728 * 5 4 2 32 32 H 1.09003 * 109.47264 * 330.00585 * 6 4 2 33 33 H 1.08999 * 109.47078 * 210.00042 * 6 4 2 34 34 H 1.09005 * 110.51886 * 100.79140 * 10 9 7 35 35 H 1.09006 * 110.83140 * 337.82857 * 10 9 7 36 36 H 0.96994 * 120.00094 * 88.41638 * 13 11 10 37 37 H 0.97001 * 119.99394 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46892 * 177.07163 * 23 22 11 39 39 H 1.09000 * 109.47199 * 297.07499 * 23 22 11 40 40 H 1.09000 * 109.46597 * 57.07746 * 23 22 11 41 41 H 1.09002 * 109.47188 * 302.92319 * 24 22 11 42 42 H 1.08995 * 109.47348 * 62.92512 * 24 22 11 43 43 H 1.09002 * 109.47358 * 182.92520 * 24 22 11 44 44 H 1.09002 * 109.91598 * 35.15596 * 25 9 7 45 45 H 1.08999 * 109.91369 * 274.06677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1671 0.0000 7 6 4.1488 -1.1662 1.4207 8 8 3.3609 -1.1661 2.3427 9 7 5.4739 -1.1665 1.6664 10 6 6.5710 -1.1719 0.6675 11 6 7.6211 -2.1238 1.2935 12 1 7.3582 -3.1650 1.1066 13 7 8.9614 -1.8258 0.7824 14 6 9.4326 -2.4788 -0.3251 15 1 8.8164 -3.2138 -0.8216 16 6 10.7023 -2.1962 -0.8097 17 7 11.1554 -2.8243 -1.8740 18 14 11.7678 -0.9245 0.0486 19 1 12.5857 -1.5889 1.0950 20 1 12.6638 -0.2783 -0.9438 21 1 10.9012 0.1046 0.6770 22 6 7.5251 -1.7969 2.8017 23 6 8.6168 -0.8018 3.2004 24 6 7.6425 -3.0771 3.6314 25 6 6.1325 -1.1662 2.9861 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.2664 -2.7503 1.0282 30 1 0.4962 -2.3056 -0.5137 31 1 2.0377 -3.1956 -0.5129 32 1 4.0090 -0.2774 -0.5145 33 1 4.0090 -2.0574 -0.5134 34 1 6.9833 -0.1700 0.5473 35 1 6.2220 -1.5601 -0.2895 36 1 9.5149 -1.1660 1.2285 37 1 12.0426 -2.6264 -2.2128 38 1 8.5043 -0.5416 4.2529 39 1 9.5959 -1.2532 3.0403 40 1 8.5276 0.0982 2.5921 41 1 6.8670 -3.7799 3.3268 42 1 8.6228 -3.5256 3.4707 43 1 7.5212 -2.8377 4.6879 44 1 5.5484 -1.7559 3.6927 45 1 6.2336 -0.1439 3.3503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486224063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:10 Heat of formation + Delta-G solvation = -42.858754 kcal Electronic energy + Delta-G solvation = -25226.069931 eV Core-core repulsion = 21665.580696 eV Total energy + Delta-G solvation = -3560.489235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43193 -39.55876 -37.94060 -35.49724 -34.28644 -33.30560 -31.19610 -30.87428 -28.49791 -27.92392 -27.19756 -26.72424 -25.16070 -23.77478 -21.56998 -20.08644 -19.00854 -18.69359 -17.71871 -17.18925 -17.03442 -16.33874 -15.70799 -15.62608 -14.80632 -14.58874 -14.23316 -13.97461 -13.77954 -13.50514 -13.33465 -13.19121 -12.96491 -12.90499 -12.73069 -12.56538 -12.35615 -12.16433 -11.97242 -11.85243 -11.65345 -11.38065 -11.32319 -11.09123 -10.68108 -10.55126 -10.37545 -10.04795 -10.02245 -9.95768 -9.64656 -9.11574 -8.79538 -8.47282 -7.40297 -5.88306 -3.25645 2.42163 2.74111 2.75557 3.28424 3.29337 3.31812 3.39172 4.43538 4.48626 4.53289 4.81189 4.89113 4.93120 4.96829 5.02178 5.09712 5.12423 5.28963 5.32926 5.36057 5.44251 5.50198 5.56713 5.63462 5.63693 5.74541 5.79047 5.87323 5.95494 6.05310 6.10596 6.14926 6.16441 6.31123 6.40103 6.46528 6.50737 6.74455 7.16874 7.72103 7.86560 8.01521 8.29014 8.31125 9.07723 9.79916 9.98485 11.29451 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.003924 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.059364 B = 7133.869093 C = 7778.151587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.544 6.544 4 N -0.602 5.602 5 C 0.079 3.921 6 C 0.099 3.901 7 C 0.518 3.482 8 O -0.547 6.547 9 N -0.616 5.616 10 C 0.072 3.928 11 C 0.185 3.815 12 H 0.075 0.925 13 N -0.737 5.737 14 C -0.253 4.253 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.878 3.122 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.131 4.131 25 C 0.120 3.880 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.368 0.632 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 0.599 6.100 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.305 3.695 3 O -0.420 6.420 4 N -0.335 5.335 5 C -0.064 4.064 6 C -0.027 4.027 7 C 0.305 3.695 8 O -0.425 6.425 9 N -0.351 5.351 10 C -0.053 4.053 11 C 0.073 3.927 12 H 0.093 0.907 13 N -0.380 5.380 14 C -0.382 4.382 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.576 5.576 18 Si 0.708 3.292 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.093 4.093 23 C -0.197 4.197 24 C -0.188 4.188 25 C -0.003 4.003 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.204 0.796 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.620 1.002 6.339 18.752 hybrid contribution 0.985 0.827 0.459 1.366 sum -16.634 1.830 6.797 18.062 Atomic orbital electron populations 1.21915 0.91517 1.05363 1.04097 1.20809 0.90746 0.82896 0.75078 1.90723 1.70786 1.31103 1.49425 1.47452 1.05363 1.07000 1.73672 1.21869 0.97029 0.84948 1.02507 1.21300 0.80995 1.05903 0.94510 1.20712 0.80661 0.76242 0.91900 1.90651 1.54593 1.50951 1.46308 1.48847 1.04700 1.72184 1.09358 1.23736 0.87422 1.01989 0.92173 1.21224 0.85435 0.96898 0.89110 0.90705 1.42907 1.12944 1.48438 1.33748 1.19076 0.99130 1.17482 1.02544 0.89044 1.24654 0.97223 0.99231 0.97451 1.69692 1.18755 1.44637 1.24481 0.86661 0.81087 0.82150 0.79293 1.20880 1.21551 1.20177 1.21747 0.93627 0.96162 0.97730 1.21804 0.98834 0.98568 1.00476 1.21792 1.02504 0.96035 0.98491 1.22097 0.92352 1.00509 0.85388 0.89255 0.89099 0.89383 0.92019 0.90646 0.90785 0.86852 0.87218 0.90833 0.90351 0.79621 0.92892 0.92760 0.91419 0.92386 0.92727 0.91662 0.93042 0.90912 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.87 36.01 0.32 -1.05 16 2 C 0.52 6.78 7.78 -10.99 -0.09 6.70 16 3 O -0.54 -9.62 16.66 5.56 0.09 -9.53 16 4 N -0.60 -7.13 2.36 -182.95 -0.43 -7.56 16 5 C 0.08 0.61 10.29 59.85 0.62 1.23 16 6 C 0.10 1.29 4.88 -5.19 -0.03 1.26 16 7 C 0.52 8.27 7.96 -10.98 -0.09 8.18 16 8 O -0.55 -10.27 16.77 5.56 0.09 -10.17 16 9 N -0.62 -9.56 3.30 -169.55 -0.56 -10.12 16 10 C 0.07 1.16 6.63 -1.98 -0.01 1.14 16 11 C 0.19 3.23 3.15 -66.06 -0.21 3.02 16 12 H 0.07 1.36 7.81 -51.93 -0.41 0.95 16 13 N -0.74 -15.78 4.77 -51.61 -0.25 -16.03 16 14 C -0.25 -6.57 10.44 -15.06 -0.16 -6.73 16 15 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 17 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 18 Si 0.88 20.95 27.73 -169.99 -4.71 16.24 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 22 C -0.09 -1.34 0.95 -153.15 -0.15 -1.49 16 23 C -0.14 -2.02 7.02 37.16 0.26 -1.76 16 24 C -0.13 -1.75 8.23 37.16 0.31 -1.44 16 25 C 0.12 1.77 6.28 -2.99 -0.02 1.75 16 26 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.09 0.47 7.40 -51.93 -0.38 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.38 6.44 -51.93 -0.33 0.04 16 31 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 32 H 0.11 1.56 7.42 -51.93 -0.39 1.18 16 33 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.18 7.27 -51.93 -0.38 0.80 16 36 H 0.37 7.79 2.99 -40.82 -0.12 7.67 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.07 7.00 -51.93 -0.36 0.71 16 40 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 41 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.07 7.59 -51.93 -0.39 0.68 16 45 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -34.49 360.85 -6.25 -40.74 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.36 Total: 7.01 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.66 Total: 11.03 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.46 Total: -60.76 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.19 Total: -19.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.49 -6.25 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486224063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.120 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds