Wall clock time and date at job start Tue Mar 31 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 119.99606 * 2 1 4 4 N 1.34773 * 119.99948 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00163 * 0.02562 * 4 2 1 6 6 C 1.46501 * 119.99727 * 179.97438 * 4 2 1 7 7 C 1.50708 * 109.46963 * 90.00123 * 6 4 2 8 8 O 1.21277 * 119.99454 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99859 * 179.97438 * 7 6 4 10 10 C 1.48377 * 127.17363 * 359.79658 * 9 7 6 11 11 C 1.54941 * 103.37625 * 219.23685 * 10 9 7 12 12 H 1.09002 * 110.73789 * 81.06128 * 11 10 9 13 13 N 1.46500 * 110.74150 * 204.38905 * 11 10 9 14 14 C 1.36936 * 119.99987 * 268.41964 * 13 11 10 15 15 H 1.08004 * 119.99840 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00225 * 179.97438 * 14 13 11 17 17 N 1.31622 * 119.99978 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99736 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47358 * 90.00130 * 18 16 14 20 20 H 1.48499 * 109.47080 * 209.99933 * 18 16 14 21 21 H 1.48497 * 109.47264 * 329.99945 * 18 16 14 22 22 C 1.54616 * 102.83624 * 322.72418 * 11 10 9 23 23 C 1.52999 * 110.32768 * 262.95516 * 22 11 10 24 24 C 1.53001 * 110.32548 * 140.74040 * 22 11 10 25 25 C 1.47485 * 127.02912 * 180.02562 * 9 7 6 26 26 H 1.09003 * 109.47191 * 239.99853 * 1 2 3 27 27 H 1.09004 * 109.47563 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46831 * 120.00005 * 1 2 3 29 29 H 1.08996 * 109.47008 * 269.99641 * 5 4 2 30 30 H 1.09004 * 109.46867 * 29.99806 * 5 4 2 31 31 H 1.08998 * 109.47263 * 149.99728 * 5 4 2 32 32 H 1.09003 * 109.47264 * 330.00585 * 6 4 2 33 33 H 1.08999 * 109.47078 * 210.00042 * 6 4 2 34 34 H 1.09005 * 110.51886 * 100.79140 * 10 9 7 35 35 H 1.09006 * 110.83140 * 337.82857 * 10 9 7 36 36 H 0.96994 * 120.00094 * 88.41638 * 13 11 10 37 37 H 0.97001 * 119.99394 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46892 * 177.07163 * 23 22 11 39 39 H 1.09000 * 109.47199 * 297.07499 * 23 22 11 40 40 H 1.09000 * 109.46597 * 57.07746 * 23 22 11 41 41 H 1.09002 * 109.47188 * 302.92319 * 24 22 11 42 42 H 1.08995 * 109.47348 * 62.92512 * 24 22 11 43 43 H 1.09002 * 109.47358 * 182.92520 * 24 22 11 44 44 H 1.09002 * 109.91598 * 35.15596 * 25 9 7 45 45 H 1.08999 * 109.91369 * 274.06677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1671 0.0000 7 6 4.1488 -1.1662 1.4207 8 8 3.3609 -1.1661 2.3427 9 7 5.4739 -1.1665 1.6664 10 6 6.5710 -1.1719 0.6675 11 6 7.6211 -2.1238 1.2935 12 1 7.3582 -3.1650 1.1066 13 7 8.9614 -1.8258 0.7824 14 6 9.4326 -2.4788 -0.3251 15 1 8.8164 -3.2138 -0.8216 16 6 10.7023 -2.1962 -0.8097 17 7 11.1554 -2.8243 -1.8740 18 14 11.7678 -0.9245 0.0486 19 1 12.5857 -1.5889 1.0950 20 1 12.6638 -0.2783 -0.9438 21 1 10.9012 0.1046 0.6770 22 6 7.5251 -1.7969 2.8017 23 6 8.6168 -0.8018 3.2004 24 6 7.6425 -3.0771 3.6314 25 6 6.1325 -1.1662 2.9861 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.2664 -2.7503 1.0282 30 1 0.4962 -2.3056 -0.5137 31 1 2.0377 -3.1956 -0.5129 32 1 4.0090 -0.2774 -0.5145 33 1 4.0090 -2.0574 -0.5134 34 1 6.9833 -0.1700 0.5473 35 1 6.2220 -1.5601 -0.2895 36 1 9.5149 -1.1660 1.2285 37 1 12.0426 -2.6264 -2.2128 38 1 8.5043 -0.5416 4.2529 39 1 9.5959 -1.2532 3.0403 40 1 8.5276 0.0982 2.5921 41 1 6.8670 -3.7799 3.3268 42 1 8.6228 -3.5256 3.4707 43 1 7.5212 -2.8377 4.6879 44 1 5.5484 -1.7559 3.6927 45 1 6.2336 -0.1439 3.3503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486224063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:10 Heat of formation + Delta-G solvation = -66.651752 kcal Electronic energy + Delta-G solvation = -25227.101673 eV Core-core repulsion = 21665.580696 eV Total energy + Delta-G solvation = -3561.520976 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60594 -40.69453 -39.24601 -36.51269 -35.96773 -34.70660 -33.08113 -31.74622 -29.57897 -29.24952 -28.35682 -27.60998 -26.20121 -25.54295 -23.09535 -21.15666 -20.43838 -19.90701 -19.39747 -18.34126 -18.04201 -17.44957 -17.04359 -16.71031 -16.34387 -15.93971 -15.67850 -15.26801 -15.11903 -14.77481 -14.49048 -14.33720 -14.24275 -13.95242 -13.56214 -13.48199 -13.44926 -13.27831 -13.11629 -13.04614 -12.96812 -12.77768 -12.70872 -12.57000 -12.20060 -11.95274 -11.92634 -11.64458 -11.36871 -11.26878 -11.01414 -10.97996 -9.84985 -9.79278 -9.27456 -8.00281 -5.34222 1.39498 1.40979 1.41519 1.48156 1.50276 1.81222 2.17838 2.49581 3.25771 3.30512 3.61530 3.65639 3.71984 3.80444 3.93355 4.09688 4.25744 4.27288 4.31095 4.33573 4.40489 4.47155 4.55758 4.61480 4.73566 4.74777 4.76692 4.81806 4.90719 4.92391 4.98946 5.05022 5.06648 5.12754 5.24013 5.29842 5.36825 5.45795 5.80458 6.23547 6.30152 6.44699 6.98738 7.08948 7.10746 7.83692 8.02633 9.20657 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.003924 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.059364 B = 7133.869093 C = 7778.151587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.501 3.499 3 O -0.602 6.602 4 N -0.603 5.603 5 C 0.073 3.927 6 C 0.098 3.902 7 C 0.514 3.486 8 O -0.576 6.576 9 N -0.615 5.615 10 C 0.082 3.918 11 C 0.178 3.822 12 H 0.067 0.933 13 N -0.738 5.738 14 C -0.228 4.228 15 H 0.065 0.935 16 C -0.056 4.056 17 N -0.980 5.980 18 Si 0.939 3.061 19 H -0.278 1.278 20 H -0.300 1.300 21 H -0.251 1.251 22 C -0.082 4.082 23 C -0.140 4.140 24 C -0.127 4.127 25 C 0.120 3.880 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.372 0.628 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.046 0.721 7.421 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.483 6.483 4 N -0.335 5.335 5 C -0.068 4.068 6 C -0.029 4.029 7 C 0.303 3.697 8 O -0.457 6.457 9 N -0.349 5.349 10 C -0.043 4.043 11 C 0.068 3.932 12 H 0.085 0.915 13 N -0.382 5.382 14 C -0.359 4.359 15 H 0.083 0.917 16 C -0.248 4.248 17 N -0.630 5.630 18 Si 0.766 3.234 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.175 1.175 22 C -0.084 4.084 23 C -0.197 4.197 24 C -0.185 4.185 25 C -0.003 4.003 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.208 0.792 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.257 1.100 7.705 20.771 hybrid contribution 1.360 0.704 0.074 1.534 sum -17.897 1.804 7.779 19.598 Atomic orbital electron populations 1.21946 0.87514 1.06083 1.06406 1.21814 0.92805 0.82317 0.73802 1.90688 1.72256 1.33143 1.52232 1.47697 1.04963 1.08268 1.72525 1.22150 0.98446 0.83400 1.02821 1.21338 0.82312 1.06575 0.92641 1.21254 0.80361 0.75301 0.92800 1.90629 1.55157 1.52386 1.47485 1.48870 1.04649 1.71886 1.09510 1.23481 0.87162 1.01175 0.92528 1.21374 0.83806 0.96778 0.91291 0.91500 1.42849 1.14567 1.48157 1.32626 1.19053 0.98309 1.15844 1.02704 0.91693 1.25362 0.98955 1.01920 0.98542 1.69859 1.19158 1.47187 1.26835 0.85663 0.79401 0.80239 0.78051 1.20393 1.22661 1.17526 1.21685 0.93927 0.97088 0.95657 1.21814 0.97801 0.97926 1.02208 1.21769 1.01912 0.95140 0.99653 1.22143 0.92085 1.00855 0.85178 0.87639 0.89340 0.85989 0.92695 0.87318 0.89308 0.87995 0.84538 0.91379 0.89557 0.79181 0.93430 0.90007 0.92623 0.92978 0.92615 0.92729 0.90716 0.90551 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.87 71.24 0.63 -1.56 16 2 C 0.50 12.69 7.78 87.66 0.68 13.38 16 3 O -0.60 -21.60 16.66 -3.02 -0.05 -21.65 16 4 N -0.60 -13.35 2.36 -851.13 -2.01 -15.36 16 5 C 0.07 0.93 10.29 127.77 1.31 2.24 16 6 C 0.10 2.46 4.88 85.64 0.42 2.87 16 7 C 0.51 15.96 7.96 87.66 0.70 16.66 16 8 O -0.58 -21.16 16.77 -3.02 -0.05 -21.22 16 9 N -0.62 -18.34 3.30 -808.74 -2.67 -21.01 16 10 C 0.08 2.54 6.63 86.68 0.57 3.11 16 11 C 0.18 6.02 3.15 46.21 0.15 6.16 16 12 H 0.07 2.38 7.81 -2.39 -0.02 2.37 16 13 N -0.74 -30.93 4.77 -317.20 -1.51 -32.44 16 14 C -0.23 -11.93 10.44 84.03 0.88 -11.06 16 15 H 0.07 3.69 8.06 -2.91 -0.02 3.67 16 16 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 17 N -0.98 -60.18 13.97 21.65 0.30 -59.88 16 18 Si 0.94 43.14 27.73 68.60 1.90 45.04 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.25 -10.32 6.52 99.48 0.65 -9.68 16 22 C -0.08 -2.26 0.95 -51.30 -0.05 -2.31 16 23 C -0.14 -3.72 7.02 71.98 0.51 -3.21 16 24 C -0.13 -3.13 8.23 71.98 0.59 -2.53 16 25 C 0.12 3.32 6.28 86.52 0.54 3.86 16 26 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 27 H 0.09 1.27 8.12 -2.38 -0.02 1.25 16 28 H 0.12 0.82 7.40 -2.39 -0.02 0.80 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.65 6.44 -2.38 -0.02 0.63 16 31 H 0.09 0.88 7.89 -2.39 -0.02 0.86 16 32 H 0.10 2.81 7.42 -2.39 -0.02 2.80 16 33 H 0.14 2.59 7.67 -2.39 -0.02 2.57 16 34 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.09 2.52 7.27 -2.38 -0.02 2.50 16 36 H 0.37 15.11 2.99 -92.71 -0.28 14.83 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.63 7.00 -2.39 -0.02 1.61 16 40 H 0.05 1.44 7.95 -2.39 -0.02 1.42 16 41 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 2.08 7.59 -2.39 -0.02 2.06 16 45 H 0.07 1.81 7.68 -2.39 -0.02 1.79 16 Total: -1.00 -76.86 360.85 3.95 -72.91 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.64 Total: 28.64 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 7.40 Total: 24.97 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.89 Total: -128.69 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.10 Total: -42.87 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.90 Total: 45.04 kcal Total: -76.86 3.95 -72.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486224063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.257 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds