Wall clock time and date at job start Tue Mar 31 2020 03:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00406 * 2 1 4 4 N 1.34780 * 119.99563 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00229 * 0.02562 * 4 2 1 6 6 C 1.46499 * 119.99546 * 180.02562 * 4 2 1 7 7 C 1.50703 * 109.47349 * 270.00192 * 6 4 2 8 8 O 1.21293 * 119.99643 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00337 * 180.02562 * 7 6 4 10 10 C 1.47420 * 125.64829 * 359.69762 * 9 7 6 11 11 C 1.55132 * 104.72634 * 155.81714 * 10 9 7 12 12 H 1.09004 * 111.22162 * 279.17735 * 11 10 9 13 13 N 1.46499 * 110.90990 * 155.27397 * 11 10 9 14 14 C 1.36927 * 120.00042 * 92.97137 * 13 11 10 15 15 H 1.08000 * 120.00342 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99884 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47376 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47133 * 120.00186 * 18 16 14 21 21 H 1.48506 * 109.47481 * 240.00349 * 18 16 14 22 22 C 1.55155 * 101.48472 * 37.28862 * 11 10 9 23 23 C 1.52998 * 110.72068 * 205.96938 * 22 11 10 24 24 C 1.53004 * 110.71669 * 82.70015 * 22 11 10 25 25 C 1.47023 * 125.64813 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.47362 * 270.00423 * 1 2 3 27 27 H 1.09003 * 109.47180 * 30.00124 * 1 2 3 28 28 H 1.09000 * 109.47415 * 149.99798 * 1 2 3 29 29 H 1.09002 * 109.47391 * 89.99442 * 5 4 2 30 30 H 1.09001 * 109.46813 * 329.99499 * 5 4 2 31 31 H 1.09004 * 109.47041 * 209.99626 * 5 4 2 32 32 H 1.08993 * 109.47560 * 30.00104 * 6 4 2 33 33 H 1.09000 * 109.47209 * 150.00790 * 6 4 2 34 34 H 1.09001 * 110.36301 * 274.74311 * 10 9 7 35 35 H 1.08997 * 110.37119 * 37.06214 * 10 9 7 36 36 H 0.97007 * 119.99567 * 272.97569 * 13 11 10 37 37 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.46868 * 174.98095 * 23 22 11 39 39 H 1.08994 * 109.47469 * 294.98238 * 23 22 11 40 40 H 1.09002 * 109.47012 * 54.98115 * 23 22 11 41 41 H 1.09000 * 109.47144 * 305.02477 * 24 22 11 42 42 H 1.08998 * 109.47373 * 65.02510 * 24 22 11 43 43 H 1.08997 * 109.47066 * 185.02259 * 24 22 11 44 44 H 1.08999 * 109.88703 * 300.43900 * 25 9 7 45 45 H 1.08997 * 109.88563 * 61.45075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4483 -2.4360 0.0005 6 6 3.6458 -1.1673 0.0011 7 6 4.1487 -1.1675 -1.4195 8 8 3.3609 -1.1673 -2.3417 9 7 5.4738 -1.1681 -1.6653 10 6 6.5371 -1.1622 -0.6442 11 6 7.7699 -1.7799 -1.3549 12 1 7.7123 -2.8683 -1.3701 13 7 9.0149 -1.3314 -0.7263 14 6 9.5903 -2.0811 0.2645 15 1 9.1266 -3.0032 0.5825 16 6 10.7703 -1.6564 0.8598 17 7 11.3357 -0.5329 0.4720 18 14 11.5556 -2.6795 2.2110 19 1 10.7297 -3.8882 2.4602 20 1 12.9196 -3.0904 1.7915 21 1 11.6422 -1.8735 3.4553 22 6 7.6269 -1.1955 -2.7851 23 6 8.2994 -2.1081 -3.8125 24 6 8.2078 0.2184 -2.8526 25 6 6.0984 -1.1679 -2.9963 26 1 -0.3634 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.2669 -2.7508 -1.0271 30 1 0.4957 -2.3055 0.5140 31 1 2.0372 -3.1956 0.5147 32 1 4.0090 -0.2773 0.5148 33 1 4.0089 -2.0572 0.5151 34 1 6.7515 -0.1420 -0.3258 35 1 6.2462 -1.7737 0.2100 36 1 9.4316 -0.5033 -1.0121 37 1 12.1604 -0.2364 0.8877 38 1 8.1108 -1.7264 -4.8160 39 1 9.3735 -2.1325 -3.6290 40 1 7.8929 -3.1157 -3.7246 41 1 7.7371 0.8413 -2.0919 42 1 9.2825 0.1786 -2.6755 43 1 8.0175 0.6427 -3.8384 44 1 5.7854 -2.0512 -3.5529 45 1 5.8130 -0.2672 -3.5396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486224064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:12 Heat of formation + Delta-G solvation = -50.688075 kcal Electronic energy + Delta-G solvation = -25151.413916 eV Core-core repulsion = 21590.585176 eV Total energy + Delta-G solvation = -3560.828739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40149 -39.48922 -37.81988 -35.47926 -34.15077 -33.20988 -30.93260 -30.78586 -28.42061 -27.54111 -27.00706 -26.71227 -25.14404 -23.93512 -21.58048 -20.02041 -18.88129 -18.53912 -17.37355 -17.16754 -16.98879 -16.32121 -15.62099 -15.57484 -14.76007 -14.58491 -14.03236 -13.93191 -13.71628 -13.44384 -13.30516 -12.98060 -12.97224 -12.88424 -12.67805 -12.48893 -12.25452 -12.06241 -11.96983 -11.75426 -11.53753 -11.29354 -11.05264 -10.95157 -10.58408 -10.48300 -10.21522 -10.02622 -9.95551 -9.88619 -9.70370 -9.05305 -8.76203 -8.33559 -7.10854 -5.88447 -3.18783 2.44819 2.77323 2.80633 3.36050 3.37805 3.43205 3.44871 4.45312 4.47732 4.64962 4.81540 4.97168 5.00491 5.06627 5.10145 5.16444 5.19102 5.24644 5.38281 5.47950 5.50937 5.59558 5.64093 5.66891 5.79386 5.87687 5.98021 6.02868 6.12655 6.14056 6.19666 6.32586 6.34590 6.42153 6.56488 6.66017 6.71779 6.87984 7.18778 7.60421 7.78036 8.04022 8.29239 8.36060 9.41898 9.96010 10.31218 11.33632 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003909 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.403271 B = 7161.251166 C = 8073.166936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.516 3.484 3 O -0.543 6.543 4 N -0.602 5.602 5 C 0.079 3.921 6 C 0.100 3.900 7 C 0.511 3.489 8 O -0.548 6.548 9 N -0.610 5.610 10 C 0.069 3.931 11 C 0.182 3.818 12 H 0.069 0.931 13 N -0.710 5.710 14 C -0.249 4.249 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.134 4.134 25 C 0.122 3.878 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.257 0.743 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 -3.987 -2.627 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.305 3.695 3 O -0.419 6.419 4 N -0.335 5.335 5 C -0.063 4.063 6 C -0.027 4.027 7 C 0.298 3.702 8 O -0.427 6.427 9 N -0.344 5.344 10 C -0.057 4.057 11 C 0.069 3.931 12 H 0.087 0.913 13 N -0.351 5.351 14 C -0.380 4.380 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.090 4.090 23 C -0.185 4.185 24 C -0.192 4.192 25 C -0.001 4.001 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.227 0.773 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.610 -3.550 -2.951 18.205 hybrid contribution 0.663 -0.324 0.733 1.040 sum -16.947 -3.874 -2.218 17.525 Atomic orbital electron populations 1.21914 0.91556 1.05050 1.04479 1.20813 0.90720 0.82925 0.75055 1.90730 1.70699 1.31110 1.49389 1.47470 1.05402 1.06950 1.73717 1.21868 0.97025 0.84985 1.02467 1.21296 0.80931 1.05776 0.94664 1.20744 0.81007 0.76552 0.91852 1.90651 1.54782 1.50951 1.46267 1.48498 1.04856 1.71984 1.09111 1.23621 0.88612 1.02045 0.91420 1.21370 0.86143 0.96731 0.88814 0.91323 1.42463 1.22523 1.27357 1.42731 1.19297 1.04290 1.03237 1.11145 0.90971 1.24754 0.98046 0.97492 1.00121 1.69660 1.20692 1.22359 1.44862 0.86130 0.79165 0.79272 0.81634 1.20499 1.21813 1.21791 1.21883 0.92369 0.97051 0.97651 1.21675 1.01589 0.98177 0.97098 1.21718 1.02213 0.94452 1.00788 1.22015 0.92228 1.01333 0.84524 0.88900 0.88936 0.89911 0.92030 0.90616 0.90871 0.86854 0.87431 0.91025 0.91277 0.77306 0.93355 0.93220 0.91362 0.92895 0.92569 0.90919 0.93279 0.91845 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.29 36.00 0.33 -1.08 16 2 C 0.52 6.95 7.78 -10.98 -0.09 6.87 16 3 O -0.54 -9.83 16.68 5.56 0.09 -9.74 16 4 N -0.60 -7.30 2.36 -182.95 -0.43 -7.73 16 5 C 0.08 0.62 9.89 59.85 0.59 1.22 16 6 C 0.10 1.33 4.93 -5.19 -0.03 1.31 16 7 C 0.51 8.45 7.92 -10.99 -0.09 8.36 16 8 O -0.55 -10.59 16.76 5.55 0.09 -10.50 16 9 N -0.61 -9.88 3.32 -170.38 -0.57 -10.45 16 10 C 0.07 1.15 6.07 -2.41 -0.01 1.14 16 11 C 0.18 3.33 2.97 -65.66 -0.20 3.13 16 12 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 13 N -0.71 -16.15 5.15 -51.24 -0.26 -16.41 16 14 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 18 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.09 -1.39 0.85 -152.67 -0.13 -1.52 16 23 C -0.13 -1.84 8.49 37.16 0.32 -1.53 16 24 C -0.13 -2.17 7.55 37.16 0.28 -1.89 16 25 C 0.12 1.91 6.04 -3.06 -0.02 1.89 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.52 6.63 -51.93 -0.34 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.38 6.53 -51.93 -0.34 0.05 16 31 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.11 1.63 7.42 -51.93 -0.39 1.24 16 33 H 0.11 1.13 7.60 -51.93 -0.39 0.73 16 34 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 35 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 36 H 0.39 9.45 5.45 -40.82 -0.22 9.23 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.06 0.95 7.42 -51.93 -0.39 0.57 16 42 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 45 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -33.51 363.08 -6.54 -40.05 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.35 Total: 7.82 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 0.72 Total: 11.07 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.54 Total: -60.41 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.19 Total: -20.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.51 -6.54 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486224064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.643 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds