Wall clock time and date at job start Tue Mar 31 2020 03:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00406 * 2 1 4 4 N 1.34780 * 119.99563 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00229 * 0.02562 * 4 2 1 6 6 C 1.46499 * 119.99546 * 180.02562 * 4 2 1 7 7 C 1.50703 * 109.47349 * 270.00192 * 6 4 2 8 8 O 1.21293 * 119.99643 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00337 * 180.02562 * 7 6 4 10 10 C 1.47420 * 125.64829 * 359.69762 * 9 7 6 11 11 C 1.55132 * 104.72634 * 155.81714 * 10 9 7 12 12 H 1.09004 * 111.22162 * 279.17735 * 11 10 9 13 13 N 1.46499 * 110.90990 * 155.27397 * 11 10 9 14 14 C 1.36927 * 120.00042 * 92.97137 * 13 11 10 15 15 H 1.08000 * 120.00342 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99884 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47376 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47133 * 120.00186 * 18 16 14 21 21 H 1.48506 * 109.47481 * 240.00349 * 18 16 14 22 22 C 1.55155 * 101.48472 * 37.28862 * 11 10 9 23 23 C 1.52998 * 110.72068 * 205.96938 * 22 11 10 24 24 C 1.53004 * 110.71669 * 82.70015 * 22 11 10 25 25 C 1.47023 * 125.64813 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.47362 * 270.00423 * 1 2 3 27 27 H 1.09003 * 109.47180 * 30.00124 * 1 2 3 28 28 H 1.09000 * 109.47415 * 149.99798 * 1 2 3 29 29 H 1.09002 * 109.47391 * 89.99442 * 5 4 2 30 30 H 1.09001 * 109.46813 * 329.99499 * 5 4 2 31 31 H 1.09004 * 109.47041 * 209.99626 * 5 4 2 32 32 H 1.08993 * 109.47560 * 30.00104 * 6 4 2 33 33 H 1.09000 * 109.47209 * 150.00790 * 6 4 2 34 34 H 1.09001 * 110.36301 * 274.74311 * 10 9 7 35 35 H 1.08997 * 110.37119 * 37.06214 * 10 9 7 36 36 H 0.97007 * 119.99567 * 272.97569 * 13 11 10 37 37 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.46868 * 174.98095 * 23 22 11 39 39 H 1.08994 * 109.47469 * 294.98238 * 23 22 11 40 40 H 1.09002 * 109.47012 * 54.98115 * 23 22 11 41 41 H 1.09000 * 109.47144 * 305.02477 * 24 22 11 42 42 H 1.08998 * 109.47373 * 65.02510 * 24 22 11 43 43 H 1.08997 * 109.47066 * 185.02259 * 24 22 11 44 44 H 1.08999 * 109.88703 * 300.43900 * 25 9 7 45 45 H 1.08997 * 109.88563 * 61.45075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4483 -2.4360 0.0005 6 6 3.6458 -1.1673 0.0011 7 6 4.1487 -1.1675 -1.4195 8 8 3.3609 -1.1673 -2.3417 9 7 5.4738 -1.1681 -1.6653 10 6 6.5371 -1.1622 -0.6442 11 6 7.7699 -1.7799 -1.3549 12 1 7.7123 -2.8683 -1.3701 13 7 9.0149 -1.3314 -0.7263 14 6 9.5903 -2.0811 0.2645 15 1 9.1266 -3.0032 0.5825 16 6 10.7703 -1.6564 0.8598 17 7 11.3357 -0.5329 0.4720 18 14 11.5556 -2.6795 2.2110 19 1 10.7297 -3.8882 2.4602 20 1 12.9196 -3.0904 1.7915 21 1 11.6422 -1.8735 3.4553 22 6 7.6269 -1.1955 -2.7851 23 6 8.2994 -2.1081 -3.8125 24 6 8.2078 0.2184 -2.8526 25 6 6.0984 -1.1679 -2.9963 26 1 -0.3634 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.2669 -2.7508 -1.0271 30 1 0.4957 -2.3055 0.5140 31 1 2.0372 -3.1956 0.5147 32 1 4.0090 -0.2773 0.5148 33 1 4.0089 -2.0572 0.5151 34 1 6.7515 -0.1420 -0.3258 35 1 6.2462 -1.7737 0.2100 36 1 9.4316 -0.5033 -1.0121 37 1 12.1604 -0.2364 0.8877 38 1 8.1108 -1.7264 -4.8160 39 1 9.3735 -2.1325 -3.6290 40 1 7.8929 -3.1157 -3.7246 41 1 7.7371 0.8413 -2.0919 42 1 9.2825 0.1786 -2.6755 43 1 8.0175 0.6427 -3.8384 44 1 5.7854 -2.0512 -3.5529 45 1 5.8130 -0.2672 -3.5396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486224064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:12 Heat of formation + Delta-G solvation = -73.423186 kcal Electronic energy + Delta-G solvation = -25152.399784 eV Core-core repulsion = 21590.585176 eV Total energy + Delta-G solvation = -3561.814608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61305 -40.66890 -39.17979 -36.51326 -35.86191 -34.66553 -32.66299 -31.75205 -29.36643 -29.09901 -28.30408 -27.62785 -26.24383 -25.77539 -23.07402 -21.12020 -20.17762 -19.80669 -19.19503 -18.31618 -18.05001 -17.48133 -16.97683 -16.69818 -16.29171 -15.98146 -15.55411 -15.37669 -15.03547 -14.48983 -14.42230 -14.37876 -14.18473 -13.92573 -13.62045 -13.48550 -13.36180 -13.24626 -13.01438 -12.96982 -12.87394 -12.77804 -12.66804 -12.58985 -12.08843 -12.01215 -11.88924 -11.55162 -11.35880 -11.23974 -11.00981 -10.90281 -9.78876 -9.71794 -9.00535 -7.91746 -5.20724 1.41171 1.51048 1.51992 1.52885 1.61550 1.83164 2.20738 2.59480 3.32422 3.39891 3.64530 3.72159 3.78602 3.86355 4.08666 4.13083 4.26720 4.31070 4.32037 4.39620 4.43042 4.46124 4.62012 4.62987 4.68191 4.76645 4.80508 4.84632 4.91691 4.98889 5.04550 5.05685 5.11046 5.18468 5.25587 5.34212 5.42232 5.48530 5.58081 6.29412 6.30218 6.45422 7.00308 7.11021 7.37986 8.10155 8.34653 9.31523 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003909 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.403271 B = 7161.251166 C = 8073.166936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.603 6.603 4 N -0.603 5.603 5 C 0.072 3.928 6 C 0.100 3.900 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.610 5.610 10 C 0.082 3.918 11 C 0.176 3.824 12 H 0.072 0.928 13 N -0.720 5.720 14 C -0.239 4.239 15 H 0.082 0.918 16 C -0.070 4.070 17 N -0.967 5.967 18 Si 0.968 3.032 19 H -0.263 1.263 20 H -0.298 1.298 21 H -0.298 1.298 22 C -0.080 4.080 23 C -0.123 4.123 24 C -0.128 4.128 25 C 0.124 3.876 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.381 0.619 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.598 -6.040 -2.386 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.484 6.484 4 N -0.335 5.335 5 C -0.069 4.069 6 C -0.027 4.027 7 C 0.297 3.703 8 O -0.458 6.458 9 N -0.343 5.343 10 C -0.044 4.044 11 C 0.065 3.935 12 H 0.090 0.910 13 N -0.360 5.360 14 C -0.371 4.371 15 H 0.100 0.900 16 C -0.262 4.262 17 N -0.618 5.618 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.226 1.226 21 H -0.226 1.226 22 C -0.081 4.081 23 C -0.181 4.181 24 C -0.186 4.186 25 C 0.001 3.999 26 H 0.139 0.861 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.158 0.842 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.757 -5.675 -2.719 20.735 hybrid contribution 1.225 0.290 0.584 1.388 sum -18.532 -5.385 -2.134 19.416 Atomic orbital electron populations 1.21953 0.87501 1.06076 1.06555 1.21837 0.92814 0.82366 0.73744 1.90697 1.72212 1.33247 1.52270 1.47720 1.04985 1.08266 1.72502 1.22169 0.98489 0.83389 1.02818 1.21335 0.82276 1.06566 0.92568 1.21336 0.80587 0.75522 0.92889 1.90630 1.55323 1.52363 1.47511 1.48527 1.04901 1.71793 1.09097 1.23317 0.88109 1.01200 0.91790 1.21530 0.84843 0.96933 0.90158 0.91028 1.42578 1.23968 1.26862 1.42619 1.19694 1.03699 1.03125 1.10537 0.89994 1.25479 0.99210 0.98763 1.02779 1.69810 1.21112 1.24285 1.46569 0.85159 0.77986 0.78326 0.78775 1.18679 1.22601 1.22556 1.21822 0.92823 0.96893 0.96604 1.21637 1.00155 0.98521 0.97738 1.21648 1.00606 0.94755 1.01585 1.22014 0.91653 1.01702 0.84505 0.86128 0.89336 0.87426 0.92718 0.87316 0.89059 0.88274 0.84205 0.92724 0.89606 0.78428 0.94134 0.90995 0.93193 0.91822 0.93986 0.92989 0.91034 0.90742 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.29 71.24 0.66 -1.62 16 2 C 0.50 12.99 7.78 87.66 0.68 13.68 16 3 O -0.60 -22.25 16.68 -3.02 -0.05 -22.31 16 4 N -0.60 -13.51 2.36 -851.13 -2.01 -15.52 16 5 C 0.07 0.90 9.89 127.77 1.26 2.16 16 6 C 0.10 2.52 4.93 85.63 0.42 2.94 16 7 C 0.51 16.27 7.92 87.66 0.69 16.96 16 8 O -0.58 -21.84 16.76 -3.07 -0.05 -21.89 16 9 N -0.61 -19.09 3.32 -811.35 -2.70 -21.79 16 10 C 0.08 2.66 6.07 86.93 0.53 3.19 16 11 C 0.18 6.29 2.97 46.46 0.14 6.43 16 12 H 0.07 2.54 7.99 -2.38 -0.02 2.52 16 13 N -0.72 -32.87 5.15 -316.01 -1.63 -34.49 16 14 C -0.24 -12.12 9.96 84.04 0.84 -11.28 16 15 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 17 N -0.97 -56.54 13.06 21.65 0.28 -56.26 16 18 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 22 C -0.08 -2.46 0.85 -50.99 -0.04 -2.50 16 23 C -0.12 -3.35 8.49 71.98 0.61 -2.74 16 24 C -0.13 -4.15 7.55 71.98 0.54 -3.61 16 25 C 0.12 3.71 6.04 86.73 0.52 4.24 16 26 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 0.96 6.63 -2.39 -0.02 0.95 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.63 6.53 -2.39 -0.02 0.62 16 31 H 0.09 0.82 7.89 -2.38 -0.02 0.80 16 32 H 0.10 2.84 7.42 -2.39 -0.02 2.82 16 33 H 0.14 2.55 7.60 -2.39 -0.02 2.53 16 34 H 0.05 1.99 7.69 -2.39 -0.02 1.97 16 35 H 0.09 2.50 7.48 -2.39 -0.02 2.48 16 36 H 0.38 18.87 5.45 -92.70 -0.51 18.37 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 41 H 0.04 1.45 7.42 -2.39 -0.02 1.43 16 42 H 0.05 1.90 6.75 -2.39 -0.02 1.88 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.09 7.82 -2.39 -0.02 2.07 16 45 H 0.06 1.81 7.85 -2.39 -0.02 1.79 16 Total: -1.00 -74.42 363.08 3.68 -70.74 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.47 Total: 31.13 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 7.33 Total: 24.56 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -6.05 Total: -128.06 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.10 Total: -44.19 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.42 3.68 -70.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486224064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.682 kcal (2) G-P(sol) polarization free energy of solvation -74.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds