Wall clock time and date at job start Tue Mar 31 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00097 * 2 1 4 4 H 1.07999 * 119.99845 * 322.02849 * 3 2 1 5 5 C 1.38813 * 120.00238 * 142.03537 * 3 2 1 6 6 N 1.31618 * 120.00212 * 157.01621 * 5 3 2 7 7 Si 1.86793 * 120.00076 * 337.01936 * 5 3 2 8 8 H 1.48500 * 109.47578 * 95.67827 * 7 5 3 9 9 H 1.48500 * 109.47246 * 215.68007 * 7 5 3 10 10 H 1.48510 * 109.46894 * 335.68206 * 7 5 3 11 11 C 1.46506 * 119.99778 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46547 * 90.00052 * 11 2 1 13 13 C 1.53000 * 109.46657 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47158 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00327 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99609 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00163 * 180.02562 * 15 14 13 18 18 C 1.52995 * 109.46888 * 179.97438 * 17 15 14 19 19 H 1.09002 * 110.54493 * 307.60708 * 18 17 15 20 20 C 1.54632 * 110.48468 * 184.99929 * 18 17 15 21 21 C 1.54483 * 101.79948 * 216.54366 * 20 18 17 22 22 N 1.46762 * 105.47348 * 25.38986 * 21 20 18 23 23 C 1.46503 * 124.34724 * 163.00514 * 22 21 20 24 24 C 1.34420 * 111.30238 * 342.99129 * 22 21 20 25 25 O 1.21281 * 124.94250 * 180.38408 * 24 22 21 26 26 H 1.09004 * 109.47208 * 265.65570 * 1 2 3 27 27 H 1.09005 * 109.46927 * 25.65173 * 1 2 3 28 28 H 1.08995 * 109.47279 * 145.65219 * 1 2 3 29 29 H 0.96996 * 120.00467 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47104 * 330.00278 * 11 2 1 31 31 H 1.08995 * 109.46983 * 210.00454 * 11 2 1 32 32 H 1.09002 * 109.46788 * 60.00183 * 12 11 2 33 33 H 1.09002 * 109.47444 * 299.99819 * 12 11 2 34 34 H 1.09002 * 109.47193 * 60.00650 * 13 12 11 35 35 H 1.08998 * 109.47709 * 300.00119 * 13 12 11 36 36 H 0.97008 * 119.99606 * 359.97438 * 14 13 12 37 37 H 1.08997 * 109.47421 * 59.99645 * 17 15 14 38 38 H 1.09002 * 109.46920 * 299.99364 * 17 15 14 39 39 H 1.08994 * 110.97216 * 98.40479 * 20 18 17 40 40 H 1.08998 * 110.96630 * 334.67507 * 20 18 17 41 41 H 1.08995 * 110.25246 * 144.39580 * 21 20 18 42 42 H 1.09007 * 110.24149 * 266.30970 * 21 20 18 43 43 H 1.08997 * 109.46868 * 90.00685 * 23 22 21 44 44 H 1.09002 * 109.46810 * 210.00426 * 23 22 21 45 45 H 1.08996 * 109.47182 * 330.00662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7811 2.0221 -0.5755 5 6 3.3175 1.3131 0.7395 6 7 4.2044 2.2303 0.4165 7 14 3.6303 0.1825 2.1931 8 1 4.4679 -0.9638 1.7575 9 1 4.3368 0.9338 3.2616 10 1 2.3349 -0.3216 2.7160 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2179 -3.0357 -1.4413 14 7 3.4626 -3.4589 -2.8223 15 6 4.1252 -4.6065 -3.0681 16 8 4.5193 -5.2887 -2.1460 17 6 4.3773 -5.0416 -4.4888 18 6 5.1427 -6.3663 -4.4882 19 1 6.0338 -6.2930 -3.8648 20 6 5.5237 -6.7718 -5.9310 21 6 5.3618 -8.3073 -5.8807 22 7 4.3914 -8.5639 -4.8100 23 6 3.6669 -9.8253 -4.6359 24 6 4.2529 -7.4930 -4.0095 25 8 3.5206 -7.4373 -3.0443 26 1 -0.3634 -0.0778 1.0247 27 1 -0.3633 0.9264 -0.4449 28 1 -0.3633 -0.8484 -0.5798 29 1 5.0206 2.3190 0.9329 30 1 1.6083 -2.0282 0.5147 31 1 3.1498 -1.1383 0.5144 32 1 3.0415 -0.9515 -1.9559 33 1 1.5000 -1.8415 -1.9556 34 1 2.6291 -3.7954 -0.9271 35 1 4.1703 -2.9049 -0.9276 36 1 3.1470 -2.9135 -3.5598 37 1 4.9668 -4.2820 -5.0022 38 1 3.4253 -5.1719 -5.0033 39 1 6.5539 -6.4953 -6.1548 40 1 4.8376 -6.3308 -6.6541 41 1 4.9806 -8.6779 -6.8321 42 1 6.3162 -8.7797 -5.6476 43 1 4.2432 -10.4893 -3.9916 44 1 2.6972 -9.6273 -4.1792 45 1 3.5214 -10.2978 -5.6073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490213725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:42 Heat of formation + Delta-G solvation = -74.878883 kcal Electronic energy + Delta-G solvation = -24129.448939 eV Core-core repulsion = 20567.571208 eV Total energy + Delta-G solvation = -3561.877732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67769 -40.27624 -38.20521 -37.38713 -36.10656 -34.74445 -33.85991 -32.43466 -30.64616 -28.19338 -27.90077 -27.29444 -25.77516 -23.38347 -22.50802 -22.42486 -21.47332 -20.19335 -18.76494 -18.21160 -17.62042 -17.45937 -17.37251 -16.89278 -16.51938 -16.18384 -15.71396 -15.43282 -15.06564 -14.83993 -14.66091 -14.63012 -14.38427 -14.06157 -13.98195 -13.43695 -13.38947 -13.25397 -13.19336 -12.94797 -12.74259 -12.71140 -12.61945 -12.40509 -12.29031 -12.17556 -11.81558 -11.76556 -11.41122 -10.89535 -10.65839 -10.56849 -10.03289 -9.66275 -8.79037 -8.23774 -5.60573 1.28327 1.37561 1.48206 1.62025 1.78884 2.12775 2.26543 2.38860 3.01553 3.38387 3.41249 3.50227 3.82437 3.93912 4.02756 4.18258 4.24615 4.35147 4.37686 4.39250 4.49057 4.53003 4.57788 4.65064 4.69158 4.75563 4.76146 4.79816 4.82445 4.87739 5.01780 5.11876 5.12282 5.21318 5.25188 5.35896 5.51199 5.65236 5.92397 6.14486 6.14947 6.65003 6.96442 7.25661 7.39658 7.60495 8.03870 8.95828 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.002752 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.608661 B =10172.262022 C =10328.271301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.258 4.258 4 H 0.047 0.953 5 C -0.014 4.014 6 N -0.943 5.943 7 Si 0.934 3.066 8 H -0.278 1.278 9 H -0.305 1.305 10 H -0.263 1.263 11 C 0.133 3.867 12 C -0.124 4.124 13 C 0.130 3.870 14 N -0.723 5.723 15 C 0.495 3.505 16 O -0.573 6.573 17 C -0.114 4.114 18 C -0.110 4.110 19 H 0.101 0.899 20 C -0.114 4.114 21 C 0.097 3.903 22 N -0.632 5.632 23 C 0.092 3.908 24 C 0.498 3.502 25 O -0.566 6.566 26 H 0.012 0.988 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.263 0.737 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.414 0.586 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -23.219 -20.511 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.352 5.352 3 C -0.388 4.388 4 H 0.065 0.935 5 C -0.211 4.211 6 N -0.587 5.587 7 Si 0.763 3.237 8 H -0.206 1.206 9 H -0.234 1.234 10 H -0.188 1.188 11 C 0.008 3.992 12 C -0.164 4.164 13 C 0.005 3.995 14 N -0.376 5.376 15 C 0.283 3.717 16 O -0.451 6.451 17 C -0.154 4.154 18 C -0.132 4.132 19 H 0.119 0.881 20 C -0.152 4.152 21 C -0.025 4.025 22 N -0.367 5.367 23 C -0.050 4.050 24 C 0.286 3.714 25 O -0.444 6.444 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.251 0.749 37 H 0.160 0.840 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.752 -23.688 -19.296 30.603 hybrid contribution 0.201 0.125 1.166 1.190 sum 1.953 -23.563 -18.130 29.795 Atomic orbital electron populations 1.21212 0.82132 1.00527 0.98375 1.44218 1.02442 1.01390 1.87118 1.18699 1.05828 0.91577 1.22697 0.93506 1.25997 0.97070 0.98196 0.99865 1.69975 1.09247 1.38686 1.40791 0.86007 0.78116 0.78441 0.81150 1.20585 1.23384 1.18757 1.21133 0.95526 0.87332 0.95232 1.22063 1.00411 0.94413 0.99486 1.21078 0.98887 0.95799 0.83716 1.45951 1.58655 1.24290 1.08710 1.21449 0.77120 0.79955 0.93156 1.90721 1.52060 1.54183 1.48181 1.21618 1.03854 0.97858 0.92076 1.21793 0.98647 0.92345 1.00376 0.88142 1.22787 1.05736 0.93932 0.92730 1.22403 0.92401 0.96994 0.90664 1.48439 1.43533 1.13949 1.30745 1.21626 0.95799 0.83994 1.03547 1.21497 0.82306 0.85794 0.81819 1.90747 1.41881 1.83213 1.28607 0.96955 0.93662 0.92160 0.92774 0.91975 0.95211 0.92448 0.90077 0.92655 0.94138 0.74908 0.83971 0.87043 0.86241 0.87561 0.87447 0.90031 0.92793 0.92970 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.70 10.70 127.77 1.37 6.07 16 2 N -0.63 -29.82 2.47 -726.93 -1.79 -31.62 16 3 C -0.26 -14.71 9.88 84.03 0.83 -13.88 16 4 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 5 C -0.01 -0.84 5.29 84.86 0.45 -0.39 16 6 N -0.94 -59.18 13.97 21.65 0.30 -58.87 16 7 Si 0.93 47.84 25.10 68.60 1.72 49.56 16 8 H -0.28 -13.90 6.68 99.48 0.66 -13.24 16 9 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 10 H -0.26 -13.05 7.11 99.48 0.71 -12.34 16 11 C 0.13 5.72 4.53 86.38 0.39 6.11 16 12 C -0.12 -4.43 5.65 30.60 0.17 -4.26 16 13 C 0.13 4.50 5.67 86.38 0.49 4.99 16 14 N -0.72 -20.19 5.56 -463.06 -2.57 -22.77 16 15 C 0.50 14.66 7.30 87.66 0.64 15.30 16 16 O -0.57 -23.13 14.05 17.40 0.24 -22.88 16 17 C -0.11 -1.93 5.09 29.85 0.15 -1.78 16 18 C -0.11 -1.91 2.54 -10.78 -0.03 -1.94 16 19 H 0.10 2.08 7.90 -2.39 -0.02 2.06 16 20 C -0.11 -0.66 6.70 31.65 0.21 -0.45 16 21 C 0.10 0.67 7.35 86.83 0.64 1.30 16 22 N -0.63 -10.64 3.33 -842.81 -2.81 -13.45 16 23 C 0.09 1.28 10.96 127.77 1.40 2.68 16 24 C 0.50 12.76 7.29 87.92 0.64 13.40 16 25 O -0.57 -21.41 15.20 17.42 0.26 -21.15 16 26 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.04 1.72 8.00 -2.38 -0.02 1.71 16 28 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.03 1.44 3.38 -2.39 -0.01 1.43 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 8.65 8.47 -92.70 -0.79 7.87 16 37 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 39 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.11 0.24 7.91 -2.39 -0.02 0.22 16 41 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.96 7.93 -2.39 -0.02 0.94 16 45 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -87.56 363.35 2.86 -84.70 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.14 Total: 9.32 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 7.36 Total: 27.16 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -6.87 Total: -126.71 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: 0.51 Total: -44.03 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.72 Total: 49.56 kcal Total: -87.56 2.86 -84.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490213725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.819 kcal (2) G-P(sol) polarization free energy of solvation -87.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds