Wall clock time and date at job start Tue Mar 31 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47511 * 2 1 4 4 C 1.36939 * 119.99908 * 265.79214 * 3 2 1 5 5 H 1.08001 * 119.99825 * 146.21147 * 4 3 2 6 6 C 1.38806 * 120.00016 * 326.21253 * 4 3 2 7 7 N 1.31622 * 120.00111 * 337.68594 * 6 4 3 8 8 Si 1.86803 * 120.00405 * 157.68644 * 6 4 3 9 9 H 1.48494 * 109.47394 * 89.99578 * 8 6 4 10 10 H 1.48496 * 109.47416 * 210.00175 * 8 6 4 11 11 H 1.48508 * 109.46570 * 329.99816 * 8 6 4 12 12 C 1.46500 * 120.00087 * 85.78448 * 3 2 1 13 13 C 1.53005 * 109.46721 * 90.00381 * 12 3 2 14 14 C 1.53005 * 109.46744 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.46868 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00176 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99892 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00455 * 179.97438 * 16 15 14 19 19 C 1.52998 * 110.54132 * 298.84531 * 18 16 15 20 20 C 1.54785 * 110.61843 * 176.21288 * 18 16 15 21 21 C 1.54483 * 101.69286 * 266.40173 * 20 18 16 22 22 N 1.46763 * 105.47234 * 334.39183 * 21 20 18 23 23 C 1.34414 * 111.30356 * 17.01626 * 22 21 20 24 24 O 1.21286 * 124.94276 * 179.55704 * 23 22 21 25 25 H 1.09006 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46725 * 299.99902 * 1 2 3 27 27 H 1.09001 * 109.47381 * 60.00210 * 1 2 3 28 28 H 1.09004 * 109.46940 * 239.99344 * 2 1 3 29 29 H 1.09004 * 109.47032 * 120.00472 * 2 1 3 30 30 H 0.97005 * 120.00290 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47287 * 330.00680 * 12 3 2 32 32 H 1.08993 * 109.47237 * 210.00250 * 12 3 2 33 33 H 1.08999 * 109.46997 * 60.00121 * 13 12 3 34 34 H 1.08993 * 109.47158 * 299.99917 * 13 12 3 35 35 H 1.08999 * 109.47214 * 60.00329 * 14 13 12 36 36 H 1.08993 * 109.47287 * 299.99913 * 14 13 12 37 37 H 0.97006 * 119.99946 * 0.02562 * 15 14 13 38 38 H 1.09000 * 109.47421 * 181.15438 * 19 18 16 39 39 H 1.09004 * 109.47126 * 301.15819 * 19 18 16 40 40 H 1.08996 * 109.47232 * 61.15737 * 19 18 16 41 41 H 1.09000 * 111.16923 * 148.23410 * 20 18 16 42 42 H 1.08996 * 110.86718 * 24.43883 * 20 18 16 43 43 H 1.08995 * 110.24640 * 215.39087 * 21 20 18 44 44 H 1.09000 * 110.31683 * 93.42921 * 21 20 18 45 45 H 0.97000 * 124.34679 * 196.98795 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3287 1.9976 -1.1827 5 1 2.1595 3.0579 -1.2997 6 6 2.8606 1.2599 -2.2313 7 7 3.4696 0.1181 -1.9903 8 14 2.7123 1.8872 -3.9846 9 1 3.8896 2.7320 -4.3093 10 1 2.6567 0.7350 -4.9196 11 1 1.4724 2.6936 -4.1184 12 6 2.1747 2.1028 1.2653 13 6 3.5855 1.8745 1.8117 14 6 3.7489 2.6287 3.1328 15 7 5.0999 2.4106 3.6557 16 6 5.4730 2.9815 4.8181 17 8 4.6901 3.6755 5.4316 18 6 6.8625 2.7567 5.3563 19 6 7.0989 1.2697 5.6281 20 6 7.0884 3.5840 6.6449 21 6 7.7307 4.8712 6.0819 22 7 8.3678 4.4720 4.8215 23 6 7.8972 3.2892 4.3897 24 8 8.2475 2.7325 3.3707 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8416 -0.3973 -2.7230 31 1 1.4426 1.7369 1.9852 32 1 2.0181 3.1683 1.0976 33 1 4.3175 2.2404 1.0918 34 1 3.7421 0.8090 1.9794 35 1 3.0168 2.2632 3.8529 36 1 3.5925 3.6942 2.9647 37 1 5.7260 1.8552 3.1652 38 1 8.1001 1.1294 6.0354 39 1 6.3611 0.9096 6.3452 40 1 7.0038 0.7106 4.6972 41 1 7.7696 3.0737 7.3259 42 1 6.1406 3.8036 7.1364 43 1 8.4773 5.2553 6.7769 44 1 6.9661 5.6255 5.8957 45 1 9.0415 4.9947 4.3593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490345374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:52 Heat of formation + Delta-G solvation = -63.080202 kcal Electronic energy + Delta-G solvation = -24608.890655 eV Core-core repulsion = 21047.524552 eV Total energy + Delta-G solvation = -3561.366102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35654 -38.91051 -36.71986 -36.28134 -34.84655 -33.49816 -31.86738 -30.87495 -29.14227 -28.51424 -25.95090 -25.19887 -23.52156 -22.45282 -21.77448 -21.31795 -19.98110 -19.17838 -17.72494 -17.46979 -16.64297 -15.88515 -15.70807 -15.26461 -14.95625 -14.69844 -14.34555 -14.04551 -13.96249 -13.80967 -13.49087 -13.37580 -12.89290 -12.63117 -12.46742 -12.42093 -12.25567 -11.70991 -11.65239 -11.44161 -11.40945 -11.05056 -10.92142 -10.69659 -10.61710 -10.24097 -10.18385 -9.91228 -9.75837 -9.71924 -9.53145 -9.40227 -8.91585 -8.44720 -6.59062 -5.76047 -3.28789 2.14288 2.56955 3.03788 3.28656 3.38302 3.45739 3.49153 3.91665 4.09310 4.41219 4.51328 4.69938 4.73896 4.99469 5.18539 5.30319 5.35659 5.38187 5.40476 5.55612 5.59553 5.71215 5.81630 5.84455 5.97750 6.20193 6.27523 6.33906 6.43787 6.51865 6.56539 6.62350 6.67433 6.74196 6.90401 6.94272 7.14368 7.30453 7.56900 7.78727 7.85018 7.93637 8.18279 8.53573 9.22401 9.86222 10.42206 11.24762 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.003287 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.800841 B = 8515.661624 C = 9179.378375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 N -0.584 5.584 4 C -0.257 4.257 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.153 3.847 13 C -0.147 4.147 14 C 0.119 3.881 15 N -0.713 5.713 16 C 0.531 3.469 17 O -0.538 6.538 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.117 4.117 21 C 0.099 3.901 22 N -0.729 5.729 23 C 0.530 3.470 24 O -0.513 6.513 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.019 0.981 30 H 0.254 0.746 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.407 0.593 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.208 5.112 18.434 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.305 5.305 4 C -0.386 4.386 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.026 3.974 13 C -0.188 4.188 14 C -0.004 4.004 15 N -0.364 5.364 16 C 0.315 3.685 17 O -0.416 6.416 18 C -0.128 4.128 19 C -0.187 4.187 20 C -0.155 4.155 21 C -0.025 4.025 22 N -0.385 5.385 23 C 0.314 3.686 24 O -0.388 6.388 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.243 0.757 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.783 5.120 18.230 20.472 hybrid contribution 0.686 0.289 -1.336 1.529 sum 8.469 5.409 16.894 19.657 Atomic orbital electron populations 1.22316 1.00976 0.98636 1.00362 1.20944 0.89728 0.86484 1.01721 1.43915 1.73883 1.11807 1.00858 1.19077 1.35928 0.93963 0.89670 0.92099 1.25070 0.97087 0.97883 0.99097 1.69984 1.36556 1.15852 1.30741 0.86415 0.78099 0.77946 0.85044 1.21343 1.21521 1.20413 1.20778 0.91800 0.96347 0.88511 1.22506 1.02876 0.99730 0.93701 1.21587 0.81709 1.00817 0.96319 1.46201 1.16506 1.50996 1.22675 1.19638 0.87641 0.79882 0.81370 1.90675 1.53342 1.38930 1.58642 1.21672 0.93820 1.00010 0.97281 1.21681 1.02939 0.90494 1.03560 1.22727 1.03582 0.94114 0.95075 1.22137 0.97542 0.97807 0.85036 1.46143 1.43555 1.22353 1.26431 1.20357 0.81651 0.81279 0.85341 1.90813 1.61489 1.61734 1.24743 0.94758 0.94918 0.93294 0.88363 0.96292 0.93620 0.94537 0.93768 0.91037 0.92139 0.91795 0.91819 0.75699 0.91048 0.90753 0.90728 0.89170 0.87208 0.89859 0.90452 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 37.16 0.38 -2.96 16 2 C 0.14 3.25 5.97 -4.05 -0.02 3.23 16 3 N -0.58 -14.46 2.45 -173.24 -0.43 -14.89 16 4 C -0.26 -7.00 9.49 -15.06 -0.14 -7.15 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.23 4.93 -17.43 -0.09 0.14 16 7 N -0.89 -25.48 11.32 55.49 0.63 -24.85 16 8 Si 0.90 21.69 29.61 -169.99 -5.03 16.66 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.15 3.17 5.69 -4.04 -0.02 3.14 16 13 C -0.15 -2.80 5.65 -26.73 -0.15 -2.95 16 14 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 15 N -0.71 -10.72 5.42 -60.30 -0.33 -11.05 16 16 C 0.53 7.54 6.55 -10.99 -0.07 7.47 16 17 O -0.54 -8.78 15.47 5.56 0.09 -8.70 16 18 C -0.12 -1.33 0.74 -155.59 -0.12 -1.44 16 19 C -0.13 -1.20 8.34 37.16 0.31 -0.89 16 20 C -0.12 -0.92 6.05 -25.01 -0.15 -1.07 16 21 C 0.10 0.70 7.78 -3.12 -0.02 0.68 16 22 N -0.73 -6.73 6.24 -59.20 -0.37 -7.10 16 23 C 0.53 6.63 7.07 -10.86 -0.08 6.56 16 24 O -0.51 -8.31 17.69 5.55 0.10 -8.21 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.10 2.64 5.32 -51.93 -0.28 2.36 16 29 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.41 6.11 7.86 -40.82 -0.32 5.78 16 38 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.78 7.77 -51.93 -0.40 0.37 16 41 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 42 H 0.11 0.95 6.93 -51.93 -0.36 0.59 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.41 3.12 8.96 -40.82 -0.37 2.76 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -32.59 368.44 -7.58 -40.17 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.59 Total: 5.75 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.20 Total: 6.66 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.49 Total: -57.88 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.18 Total: -16.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.59 -7.58 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490345374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.906 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds