Wall clock time and date at job start Tue Mar 31 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47019 * 2 1 4 4 C 1.53000 * 109.46881 * 240.00273 * 2 1 3 5 5 N 1.46501 * 109.46916 * 184.99659 * 4 2 1 6 6 C 1.34777 * 119.99724 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00182 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99532 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.62939 * 92.36028 * 8 6 5 10 10 C 1.53062 * 109.63162 * 212.75037 * 8 6 5 11 11 C 1.51795 * 110.74419 * 34.79139 * 10 8 6 12 12 C 1.51774 * 113.81050 * 66.80211 * 11 10 8 13 13 C 1.52978 * 110.88520 * 292.99865 * 12 11 10 14 14 N 1.47198 * 108.66294 * 86.46818 * 13 12 11 15 15 C 1.46501 * 119.78404 * 108.03992 * 14 13 12 16 16 C 1.33370 * 120.42848 * 288.04062 * 14 13 12 17 17 O 1.21276 * 119.89086 * 180.28903 * 16 14 13 18 18 N 1.46498 * 109.47110 * 120.00211 * 2 1 3 19 19 C 1.36932 * 120.00305 * 274.99975 * 18 2 1 20 20 H 1.08004 * 120.00012 * 0.02562 * 19 18 2 21 21 C 1.38809 * 120.00222 * 180.02562 * 19 18 2 22 22 N 1.31617 * 120.00036 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47361 * 270.00061 * 23 21 19 25 25 H 1.48497 * 109.47238 * 149.99809 * 23 21 19 26 26 H 1.48509 * 109.46731 * 29.99902 * 23 21 19 27 27 H 1.09005 * 109.47279 * 299.99834 * 1 2 3 28 28 H 1.09003 * 109.47539 * 59.99354 * 1 2 3 29 29 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47392 * 305.00063 * 4 2 1 31 31 H 1.09005 * 109.46792 * 65.00392 * 4 2 1 32 32 H 0.96998 * 120.00150 * 0.02562 * 5 4 2 33 33 H 1.08996 * 109.22305 * 155.11126 * 10 8 6 34 34 H 1.09003 * 109.22700 * 274.46314 * 10 8 6 35 35 H 1.09000 * 108.61431 * 187.92815 * 11 10 8 36 36 H 1.08999 * 108.61201 * 305.82449 * 11 10 8 37 37 H 1.09007 * 109.19433 * 53.36610 * 12 11 10 38 38 H 1.09000 * 109.19146 * 172.68493 * 12 11 10 39 39 H 1.08997 * 109.60622 * 206.21853 * 13 12 11 40 40 H 1.09000 * 109.60757 * 326.55006 * 13 12 11 41 41 H 1.08997 * 109.47067 * 90.00144 * 15 14 13 42 42 H 1.08997 * 109.46967 * 209.99583 * 15 14 13 43 43 H 1.08990 * 109.47501 * 330.00092 * 15 14 13 44 44 H 0.96999 * 119.99742 * 95.00346 * 18 2 1 45 45 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4281 -2.1914 7 8 3.5699 -1.8823 -3.1405 8 6 5.6748 -1.5367 -2.1307 9 1 5.9552 -2.4833 -1.6687 10 6 6.2532 -1.4641 -3.5460 11 6 5.4356 -0.5241 -4.4134 12 6 5.5174 0.9302 -3.9868 13 6 4.8513 1.1375 -2.6254 14 7 5.8406 0.8639 -1.5704 15 6 6.3943 1.9712 -0.7872 16 6 6.2361 -0.3855 -1.3228 17 8 7.0478 -0.6004 -0.4477 18 7 2.0183 -0.6906 1.1961 19 6 2.1491 -0.0076 2.3757 20 1 1.8919 1.0402 2.4244 21 6 2.6123 -0.6619 3.5089 22 7 2.7385 -0.0053 4.6426 23 14 3.0579 -2.4740 3.4246 24 1 1.8614 -3.2934 3.7438 25 1 4.1336 -2.7655 4.4060 26 1 3.5332 -2.8037 2.0568 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7197 -1.2953 31 1 1.7516 -0.1581 -2.1370 32 1 3.9823 -0.4627 -0.4317 33 1 7.2806 -1.1035 -3.4958 34 1 6.2444 -2.4600 -3.9889 35 1 5.7873 -0.6055 -5.4419 36 1 4.3921 -0.8370 -4.3776 37 1 6.5645 1.2264 -3.9224 38 1 5.0147 1.5501 -4.7292 39 1 4.5026 2.1668 -2.5418 40 1 4.0067 0.4559 -2.5239 41 1 5.7726 2.1412 0.0918 42 1 7.4079 1.7225 -0.4726 43 1 6.4146 2.8738 -1.3979 44 1 2.2490 -1.6318 1.1525 45 1 3.0618 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491636071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:46 Heat of formation + Delta-G solvation = -40.587878 kcal Electronic energy + Delta-G solvation = -26477.666167 eV Core-core repulsion = 22917.275405 eV Total energy + Delta-G solvation = -3560.390762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60218 -39.00119 -36.88334 -36.34099 -34.64955 -33.78061 -32.10951 -31.43920 -29.48224 -28.49723 -26.33523 -25.41534 -24.04885 -23.33668 -21.51269 -20.49675 -20.08380 -19.22408 -18.01007 -17.60133 -16.86203 -16.13994 -15.80196 -15.51646 -15.21789 -14.89399 -14.25385 -14.16442 -13.91414 -13.81274 -13.54956 -13.04041 -12.94598 -12.74735 -12.59571 -12.54455 -12.30483 -12.20095 -11.97459 -11.81491 -11.67407 -11.06715 -11.00331 -10.95098 -10.86388 -10.66531 -10.46835 -10.10317 -9.99946 -9.65616 -9.49812 -9.03524 -8.87980 -8.67601 -7.38809 -5.83847 -3.21276 2.50535 2.53404 2.91035 3.21760 3.35146 3.38125 3.44473 4.20704 4.51323 4.54031 4.62421 4.65308 4.93528 4.95375 5.11833 5.13170 5.22901 5.28526 5.33735 5.43968 5.48890 5.57011 5.57353 5.69267 5.74145 5.80740 5.84319 5.88714 5.92118 5.96147 6.00465 6.08076 6.30027 6.31559 6.36476 6.55727 6.61946 6.87151 7.26111 7.55186 7.89558 8.06720 8.18517 8.34400 9.11419 9.84215 10.02099 11.33913 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.005809 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.309505 B = 4819.032726 C = 5288.961762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.166 3.834 3 H 0.061 0.939 4 C 0.108 3.892 5 N -0.717 5.717 6 C 0.526 3.474 7 O -0.534 6.534 8 C -0.130 4.130 9 H 0.133 0.867 10 C -0.088 4.088 11 C -0.155 4.155 12 C -0.136 4.136 13 C 0.077 3.923 14 N -0.603 5.603 15 C 0.080 3.920 16 C 0.516 3.484 17 O -0.533 6.533 18 N -0.748 5.748 19 C -0.249 4.249 20 H 0.091 0.909 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.278 1.278 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 2.516 -19.064 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.079 0.921 4 C -0.017 4.017 5 N -0.370 5.370 6 C 0.313 3.687 7 O -0.413 6.413 8 C -0.154 4.154 9 H 0.151 0.849 10 C -0.127 4.127 11 C -0.192 4.192 12 C -0.174 4.174 13 C -0.046 4.046 14 N -0.336 5.336 15 C -0.062 4.062 16 C 0.303 3.697 17 O -0.410 6.410 18 N -0.392 5.392 19 C -0.379 4.379 20 H 0.109 0.891 21 C -0.185 4.185 22 N -0.576 5.576 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.571 2.288 -19.049 19.723 hybrid contribution 0.546 -1.121 0.563 1.368 sum 5.117 1.167 -18.486 19.217 Atomic orbital electron populations 1.22335 0.97641 1.01364 1.00962 1.20466 0.92961 0.95935 0.85054 0.92103 1.21839 0.79011 1.01560 0.99243 1.46445 1.08810 1.58286 1.23502 1.19902 0.88825 0.77334 0.82633 1.90600 1.69758 1.48110 1.32813 1.21978 0.93527 1.00191 0.99704 0.84886 1.21029 0.99064 1.01550 0.91022 1.21648 1.04616 0.93816 0.99090 1.21768 1.01527 0.97455 0.96679 1.22540 0.92196 1.03780 0.86071 1.47657 1.42854 1.06660 1.36398 1.21758 1.00434 0.88123 0.95868 1.20036 0.82278 0.83917 0.83504 1.90761 1.33947 1.84128 1.32143 1.42830 1.79650 1.09570 1.07114 1.18999 1.37797 0.95577 0.85531 0.89115 1.24645 1.01004 0.97349 0.95540 1.69686 1.52056 1.35603 1.00265 0.86611 0.78137 0.86894 0.77205 1.21100 1.21621 1.20394 0.91767 0.93843 0.93259 0.91489 0.91075 0.74993 0.91139 0.89965 0.91745 0.87800 0.91631 0.90657 0.89384 0.88081 0.91586 0.90470 0.91258 0.80523 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.49 37.16 0.35 -2.20 16 2 C 0.17 2.83 3.05 -67.93 -0.21 2.62 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 C 0.11 1.58 5.04 -4.04 -0.02 1.56 16 5 N -0.72 -10.93 3.52 -60.30 -0.21 -11.14 16 6 C 0.53 7.66 4.19 -10.99 -0.05 7.61 16 7 O -0.53 -8.42 13.94 5.56 0.08 -8.35 16 8 C -0.13 -1.74 3.10 -92.54 -0.29 -2.03 16 9 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 10 C -0.09 -0.96 5.24 -27.31 -0.14 -1.10 16 11 C -0.15 -1.57 5.16 -27.96 -0.14 -1.71 16 12 C -0.14 -1.24 5.73 -27.36 -0.16 -1.39 16 13 C 0.08 0.81 5.57 -3.67 -0.02 0.79 16 14 N -0.60 -7.63 2.51 -181.12 -0.45 -8.08 16 15 C 0.08 0.94 10.35 59.85 0.62 1.56 16 16 C 0.52 7.82 5.14 -11.26 -0.06 7.76 16 17 O -0.53 -10.09 16.60 5.56 0.09 -10.00 16 18 N -0.75 -16.37 4.36 -53.43 -0.23 -16.60 16 19 C -0.25 -6.64 10.41 -15.06 -0.16 -6.80 16 20 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 21 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 22 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 23 Si 0.88 22.15 27.73 -169.99 -4.71 17.43 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.41 7.04 6.65 -40.82 -0.27 6.76 16 33 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.27 4.70 -51.93 -0.24 1.02 16 37 H 0.06 0.60 8.05 -51.92 -0.42 0.18 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 40 H 0.10 1.21 3.26 -51.93 -0.17 1.04 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 43 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 44 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -32.30 346.70 -7.00 -39.30 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.19 Total: 13.13 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.36 Total: 6.89 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.12 Total: -63.63 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.30 -7.00 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.292 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds