Wall clock time and date at job start Tue Mar 31 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47019 * 2 1 4 4 C 1.53000 * 109.46881 * 240.00273 * 2 1 3 5 5 N 1.46501 * 109.46916 * 184.99659 * 4 2 1 6 6 C 1.34777 * 119.99724 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00182 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99532 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.62939 * 92.36028 * 8 6 5 10 10 C 1.53062 * 109.63162 * 212.75037 * 8 6 5 11 11 C 1.51795 * 110.74419 * 34.79139 * 10 8 6 12 12 C 1.51774 * 113.81050 * 66.80211 * 11 10 8 13 13 C 1.52978 * 110.88520 * 292.99865 * 12 11 10 14 14 N 1.47198 * 108.66294 * 86.46818 * 13 12 11 15 15 C 1.46501 * 119.78404 * 108.03992 * 14 13 12 16 16 C 1.33370 * 120.42848 * 288.04062 * 14 13 12 17 17 O 1.21276 * 119.89086 * 180.28903 * 16 14 13 18 18 N 1.46498 * 109.47110 * 120.00211 * 2 1 3 19 19 C 1.36932 * 120.00305 * 274.99975 * 18 2 1 20 20 H 1.08004 * 120.00012 * 0.02562 * 19 18 2 21 21 C 1.38809 * 120.00222 * 180.02562 * 19 18 2 22 22 N 1.31617 * 120.00036 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00064 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47361 * 270.00061 * 23 21 19 25 25 H 1.48497 * 109.47238 * 149.99809 * 23 21 19 26 26 H 1.48509 * 109.46731 * 29.99902 * 23 21 19 27 27 H 1.09005 * 109.47279 * 299.99834 * 1 2 3 28 28 H 1.09003 * 109.47539 * 59.99354 * 1 2 3 29 29 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47392 * 305.00063 * 4 2 1 31 31 H 1.09005 * 109.46792 * 65.00392 * 4 2 1 32 32 H 0.96998 * 120.00150 * 0.02562 * 5 4 2 33 33 H 1.08996 * 109.22305 * 155.11126 * 10 8 6 34 34 H 1.09003 * 109.22700 * 274.46314 * 10 8 6 35 35 H 1.09000 * 108.61431 * 187.92815 * 11 10 8 36 36 H 1.08999 * 108.61201 * 305.82449 * 11 10 8 37 37 H 1.09007 * 109.19433 * 53.36610 * 12 11 10 38 38 H 1.09000 * 109.19146 * 172.68493 * 12 11 10 39 39 H 1.08997 * 109.60622 * 206.21853 * 13 12 11 40 40 H 1.09000 * 109.60757 * 326.55006 * 13 12 11 41 41 H 1.08997 * 109.47067 * 90.00144 * 15 14 13 42 42 H 1.08997 * 109.46967 * 209.99583 * 15 14 13 43 43 H 1.08990 * 109.47501 * 330.00092 * 15 14 13 44 44 H 0.96999 * 119.99742 * 95.00346 * 18 2 1 45 45 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4281 -2.1914 7 8 3.5699 -1.8823 -3.1405 8 6 5.6748 -1.5367 -2.1307 9 1 5.9552 -2.4833 -1.6687 10 6 6.2532 -1.4641 -3.5460 11 6 5.4356 -0.5241 -4.4134 12 6 5.5174 0.9302 -3.9868 13 6 4.8513 1.1375 -2.6254 14 7 5.8406 0.8639 -1.5704 15 6 6.3943 1.9712 -0.7872 16 6 6.2361 -0.3855 -1.3228 17 8 7.0478 -0.6004 -0.4477 18 7 2.0183 -0.6906 1.1961 19 6 2.1491 -0.0076 2.3757 20 1 1.8919 1.0402 2.4244 21 6 2.6123 -0.6619 3.5089 22 7 2.7385 -0.0053 4.6426 23 14 3.0579 -2.4740 3.4246 24 1 1.8614 -3.2934 3.7438 25 1 4.1336 -2.7655 4.4060 26 1 3.5332 -2.8037 2.0568 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7197 -1.2953 31 1 1.7516 -0.1581 -2.1370 32 1 3.9823 -0.4627 -0.4317 33 1 7.2806 -1.1035 -3.4958 34 1 6.2444 -2.4600 -3.9889 35 1 5.7873 -0.6055 -5.4419 36 1 4.3921 -0.8370 -4.3776 37 1 6.5645 1.2264 -3.9224 38 1 5.0147 1.5501 -4.7292 39 1 4.5026 2.1668 -2.5418 40 1 4.0067 0.4559 -2.5239 41 1 5.7726 2.1412 0.0918 42 1 7.4079 1.7225 -0.4726 43 1 6.4146 2.8738 -1.3979 44 1 2.2490 -1.6318 1.1525 45 1 3.0618 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491636071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:46 Heat of formation + Delta-G solvation = -62.861784 kcal Electronic energy + Delta-G solvation = -26478.632036 eV Core-core repulsion = 22917.275405 eV Total energy + Delta-G solvation = -3561.356631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68208 -40.19063 -38.27437 -37.44738 -35.77016 -35.14938 -33.86725 -32.51847 -31.19933 -29.46594 -27.46457 -26.47003 -25.41265 -24.83123 -22.55387 -21.85577 -21.17658 -20.39170 -19.73711 -18.87461 -17.89391 -17.35877 -17.03533 -16.85661 -16.34736 -16.28410 -15.79024 -15.26916 -14.99354 -14.86459 -14.71310 -14.66144 -14.20186 -14.09827 -13.77928 -13.70441 -13.53211 -13.40289 -13.22223 -12.92567 -12.89327 -12.72583 -12.53805 -12.17140 -11.93364 -11.83377 -11.81916 -11.66288 -11.48742 -11.13308 -11.04478 -10.63698 -10.01531 -9.73943 -9.36214 -8.03840 -5.36065 1.33637 1.35277 1.35483 1.39359 1.41661 1.91221 2.06246 2.44668 3.19412 3.29517 3.48089 3.57343 3.70154 3.86201 3.88139 4.03029 4.12207 4.28517 4.34060 4.41422 4.46736 4.59062 4.60886 4.65016 4.72092 4.77751 4.82774 4.91857 4.96888 5.00871 5.02386 5.15587 5.19619 5.24067 5.27478 5.42415 5.53394 5.60895 5.78261 6.19960 6.22022 6.31907 6.93430 7.01177 7.06477 7.82255 7.98402 9.17384 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.005809 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.309505 B = 4819.032726 C = 5288.961762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.060 0.940 4 C 0.117 3.883 5 N -0.723 5.723 6 C 0.533 3.467 7 O -0.542 6.542 8 C -0.129 4.129 9 H 0.130 0.870 10 C -0.086 4.086 11 C -0.152 4.152 12 C -0.130 4.130 13 C 0.072 3.928 14 N -0.596 5.596 15 C 0.079 3.921 16 C 0.511 3.489 17 O -0.583 6.583 18 N -0.750 5.750 19 C -0.217 4.217 20 H 0.066 0.934 21 C -0.056 4.056 22 N -0.980 5.980 23 Si 0.940 3.060 24 H -0.280 1.280 25 H -0.303 1.303 26 H -0.260 1.260 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 2.515 -22.331 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.078 0.922 4 C -0.006 4.006 5 N -0.375 5.375 6 C 0.321 3.679 7 O -0.421 6.421 8 C -0.153 4.153 9 H 0.148 0.852 10 C -0.124 4.124 11 C -0.189 4.189 12 C -0.168 4.168 13 C -0.050 4.050 14 N -0.327 5.327 15 C -0.063 4.063 16 C 0.298 3.702 17 O -0.463 6.463 18 N -0.394 5.394 19 C -0.348 4.348 20 H 0.084 0.916 21 C -0.248 4.248 22 N -0.630 5.630 23 Si 0.770 3.230 24 H -0.206 1.206 25 H -0.230 1.230 26 H -0.185 1.185 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.194 0.806 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.057 2.301 -22.421 22.901 hybrid contribution 0.627 -1.002 1.474 1.889 sum 4.684 1.299 -20.948 21.504 Atomic orbital electron populations 1.22207 0.95973 1.01723 1.01619 1.20700 0.93976 0.95722 0.84204 0.92215 1.21774 0.78695 1.01472 0.98702 1.46484 1.08965 1.58653 1.23351 1.19932 0.89042 0.76781 0.82123 1.90608 1.70036 1.48456 1.33024 1.22021 0.92805 0.99395 1.01103 0.85220 1.21088 0.99264 1.02592 0.89464 1.21616 1.03254 0.94131 0.99912 1.21740 1.01798 0.97182 0.96098 1.22732 0.91365 1.04740 0.86153 1.47796 1.42445 1.06102 1.36386 1.21825 0.99180 0.89233 0.96092 1.20359 0.81794 0.85012 0.83014 1.90734 1.36359 1.84948 1.34302 1.42856 1.79860 1.09514 1.07186 1.18971 1.34435 0.94551 0.86879 0.91648 1.25307 1.02723 1.01259 0.95537 1.69841 1.54855 1.37265 1.01079 0.85630 0.77456 0.82405 0.77541 1.20638 1.23030 1.18531 0.94227 0.90072 0.93060 0.91707 0.88156 0.76105 0.90655 0.89018 0.89943 0.89474 0.91360 0.88332 0.87178 0.89244 0.93224 0.91854 0.87531 0.80595 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.49 71.98 0.68 -3.80 16 2 C 0.16 5.21 3.05 44.99 0.14 5.34 16 3 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 4 C 0.12 3.12 5.04 86.38 0.44 3.55 16 5 N -0.72 -20.67 3.52 -463.07 -1.63 -22.30 16 6 C 0.53 14.49 4.19 87.66 0.37 14.86 16 7 O -0.54 -15.73 13.94 -3.02 -0.04 -15.77 16 8 C -0.13 -3.31 3.10 -12.04 -0.04 -3.35 16 9 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 10 C -0.09 -1.68 5.24 30.22 0.16 -1.52 16 11 C -0.15 -2.61 5.16 29.80 0.15 -2.45 16 12 C -0.13 -1.90 5.73 30.18 0.17 -1.73 16 13 C 0.07 1.31 5.57 86.24 0.48 1.79 16 14 N -0.60 -14.26 2.51 -846.12 -2.12 -16.38 16 15 C 0.08 1.77 10.35 127.77 1.32 3.09 16 16 C 0.51 15.21 5.14 88.10 0.45 15.67 16 17 O -0.58 -22.50 16.60 -3.02 -0.05 -22.55 16 18 N -0.75 -32.11 4.36 -322.95 -1.41 -33.52 16 19 C -0.22 -11.67 10.41 84.03 0.87 -10.79 16 20 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 21 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 22 N -0.98 -62.12 13.97 21.65 0.30 -61.82 16 23 Si 0.94 46.33 27.73 68.60 1.90 48.24 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 26 H -0.26 -11.86 6.52 99.48 0.65 -11.22 16 27 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 2.14 8.12 -2.38 -0.02 2.12 16 32 H 0.40 13.34 6.65 -92.71 -0.62 12.73 16 33 H 0.07 1.41 7.86 -2.39 -0.02 1.39 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.86 4.70 -2.42 -0.01 1.85 16 37 H 0.07 1.01 8.05 -2.38 -0.02 0.99 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.52 7.92 -2.39 -0.02 1.50 16 40 H 0.09 1.89 3.26 -2.39 -0.01 1.88 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.61 7.38 -2.39 -0.02 1.59 16 43 H 0.11 1.56 8.03 -2.39 -0.02 1.54 16 44 H 0.36 15.64 5.66 -92.71 -0.52 15.11 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -71.51 346.70 2.42 -69.09 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.20 Total: 37.16 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.67 Total: 17.85 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -4.86 Total: -134.02 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.09 Total: -38.33 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.24 kcal Total: -71.51 2.42 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.233 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds