Wall clock time and date at job start Tue Mar 31 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47277 * 239.99396 * 2 1 3 5 5 N 1.46505 * 109.46974 * 185.00197 * 4 2 1 6 6 C 1.34778 * 119.99781 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00000 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99649 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.79378 * 300.49521 * 8 6 5 10 10 C 1.53061 * 109.62946 * 179.97438 * 8 6 5 11 11 C 1.51796 * 110.70640 * 155.36320 * 10 8 6 12 12 C 1.51772 * 113.81030 * 66.82828 * 11 10 8 13 13 C 1.52992 * 110.88397 * 292.99404 * 12 11 10 14 14 N 1.47193 * 108.66022 * 86.46874 * 13 12 11 15 15 C 1.46503 * 119.78146 * 108.02570 * 14 13 12 16 16 C 1.33366 * 120.43082 * 288.03722 * 14 13 12 17 17 O 1.21278 * 119.89262 * 180.28342 * 16 14 13 18 18 N 1.46507 * 109.46681 * 119.99489 * 2 1 3 19 19 C 1.36928 * 120.00053 * 274.99893 * 18 2 1 20 20 H 1.08002 * 119.99939 * 0.02562 * 19 18 2 21 21 C 1.38816 * 120.00139 * 180.02562 * 19 18 2 22 22 N 1.31615 * 119.99729 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99898 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47418 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47082 * 120.00010 * 23 21 19 26 26 H 1.48504 * 109.46542 * 239.99824 * 23 21 19 27 27 H 1.08991 * 109.47447 * 300.00225 * 1 2 3 28 28 H 1.09001 * 109.46472 * 60.00650 * 1 2 3 29 29 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47093 * 65.00439 * 4 2 1 31 31 H 1.08997 * 109.47128 * 305.00136 * 4 2 1 32 32 H 0.97003 * 119.99786 * 359.97438 * 5 4 2 33 33 H 1.09002 * 109.22478 * 35.05700 * 10 8 6 34 34 H 1.08997 * 109.22337 * 275.66245 * 10 8 6 35 35 H 1.09004 * 108.61279 * 187.94569 * 11 10 8 36 36 H 1.09004 * 108.61441 * 305.70481 * 11 10 8 37 37 H 1.08992 * 109.19784 * 53.35710 * 12 11 10 38 38 H 1.09000 * 109.19264 * 172.68303 * 12 11 10 39 39 H 1.09004 * 109.60202 * 206.22526 * 13 12 11 40 40 H 1.09003 * 109.60474 * 326.55067 * 13 12 11 41 41 H 1.09002 * 109.47236 * 89.99873 * 15 14 13 42 42 H 1.09001 * 109.46562 * 209.99383 * 15 14 13 43 43 H 1.09002 * 109.47400 * 329.99109 * 15 14 13 44 44 H 0.97000 * 119.99370 * 95.00454 * 18 2 1 45 45 H 0.97003 * 119.99610 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5002 -0.8265 -1.1904 6 6 4.1732 -1.4285 -2.1909 7 8 3.5702 -1.8836 -3.1396 8 6 5.6752 -1.5361 -2.1307 9 1 6.1147 -0.5402 -2.0757 10 6 6.1895 -2.2575 -3.3789 11 6 7.6293 -1.8722 -3.6665 12 6 8.6144 -2.3576 -2.6190 13 6 8.3847 -1.6473 -1.2836 14 7 7.3561 -2.3825 -0.5299 15 6 7.7379 -3.1671 0.6469 16 6 6.0789 -2.3392 -0.9116 17 8 5.2387 -2.9446 -0.2804 18 7 2.0183 -0.6906 1.1963 19 6 2.1490 -0.0074 2.3758 20 1 1.8918 1.0405 2.4243 21 6 2.6121 -0.6615 3.5092 22 7 2.9251 -1.9386 3.4502 23 14 2.7898 0.2704 5.1184 24 1 2.3750 1.6825 4.9210 25 1 1.9295 -0.3589 6.1524 26 1 4.2068 0.2283 5.5607 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.7518 -0.1585 -2.1370 31 1 1.6054 -1.7199 -1.2950 32 1 3.9825 -0.4622 -0.4317 33 1 5.5679 -1.9859 -4.2321 34 1 6.1310 -3.3343 -3.2207 35 1 7.9147 -2.2892 -4.6324 36 1 7.6932 -0.7857 -3.7274 37 1 8.4896 -3.4313 -2.4799 38 1 9.6295 -2.1562 -2.9612 39 1 9.3137 -1.6305 -0.7137 40 1 8.0486 -0.6264 -1.4654 41 1 7.6822 -2.5390 1.5360 42 1 7.0584 -4.0124 0.7560 43 1 8.7570 -3.5337 0.5242 44 1 2.2490 -1.6317 1.1527 45 1 3.2483 -2.3958 4.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491636072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:48 Heat of formation + Delta-G solvation = -65.735280 kcal Electronic energy + Delta-G solvation = -25588.310454 eV Core-core repulsion = 22026.829219 eV Total energy + Delta-G solvation = -3561.481235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75983 -38.78928 -36.75599 -36.21616 -34.51543 -33.41037 -31.84013 -31.22200 -28.74553 -28.41789 -26.44817 -25.16289 -23.91258 -23.43918 -20.91805 -20.41640 -20.04959 -18.67883 -17.49044 -17.37617 -16.88840 -15.87308 -15.56200 -15.25949 -14.96891 -14.56735 -14.32048 -14.03315 -13.76232 -13.62675 -13.43808 -12.93034 -12.87850 -12.70857 -12.33912 -12.12388 -12.04797 -11.94961 -11.81034 -11.61693 -11.33366 -11.16294 -10.97458 -10.84561 -10.81516 -10.68779 -10.27386 -9.92223 -9.63486 -9.58156 -9.48974 -8.90573 -8.65691 -8.48701 -6.93247 -5.69859 -3.01052 2.70891 2.80961 3.24765 3.43283 3.49075 3.51438 3.62312 4.40889 4.50715 4.55199 4.60856 4.73089 4.91358 5.12116 5.17568 5.19392 5.32088 5.37160 5.48283 5.56379 5.58121 5.63612 5.66855 5.69316 5.82542 5.83537 5.98019 6.05080 6.06020 6.15757 6.16331 6.26685 6.41879 6.47135 6.64878 6.82406 6.94443 7.12473 7.38134 7.73441 8.02994 8.32796 8.45627 8.63879 9.57471 10.14891 10.50658 11.50883 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.005186 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.444618 B = 5397.515468 C = 6907.415867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.051 0.949 4 C 0.116 3.884 5 N -0.698 5.698 6 C 0.534 3.466 7 O -0.551 6.551 8 C -0.128 4.128 9 H 0.114 0.886 10 C -0.097 4.097 11 C -0.121 4.121 12 C -0.142 4.142 13 C 0.109 3.891 14 N -0.613 5.613 15 C 0.085 3.915 16 C 0.516 3.484 17 O -0.504 6.504 18 N -0.722 5.722 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.902 3.098 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.389 0.611 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.588 1.965 -13.241 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.069 0.931 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.318 3.682 7 O -0.430 6.430 8 C -0.152 4.152 9 H 0.132 0.868 10 C -0.135 4.135 11 C -0.158 4.158 12 C -0.180 4.180 13 C -0.014 4.014 14 N -0.348 5.348 15 C -0.057 4.057 16 C 0.301 3.699 17 O -0.377 6.377 18 N -0.365 5.365 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.733 3.267 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.223 0.777 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.688 1.433 -13.397 18.507 hybrid contribution 0.501 0.352 1.464 1.587 sum 13.189 1.785 -11.933 17.875 Atomic orbital electron populations 1.22364 0.98410 1.01253 1.00222 1.20496 0.92660 0.95571 0.86367 0.93112 1.21688 0.79490 1.01161 0.98498 1.45824 1.08227 1.57976 1.22753 1.19660 0.88233 0.77688 0.82615 1.90638 1.69631 1.48488 1.34252 1.21734 0.95317 1.01835 0.96335 0.86773 1.21128 0.95726 1.00566 0.96124 1.21189 0.94078 1.01533 0.99044 1.21846 0.99643 1.01470 0.95053 1.21845 0.91713 0.95542 0.92347 1.47626 1.07185 1.50262 1.29726 1.21676 1.00319 0.96609 0.87128 1.19940 0.82401 0.82463 0.85065 1.90914 1.49209 1.43500 1.54117 1.42497 1.77897 1.11052 1.05061 1.19230 1.37109 0.93812 0.87413 0.91250 1.24754 1.02127 0.95881 0.97845 1.69720 1.50131 1.08463 1.28488 0.86203 0.77187 0.78800 0.84471 1.20650 1.21947 1.22039 0.92390 0.94282 0.93211 0.91907 0.91806 0.75501 0.88999 0.91296 0.91298 0.91701 0.91104 0.90601 0.89556 0.90582 0.92277 0.90259 0.91618 0.77685 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.62 16 2 C 0.16 3.20 3.05 -67.93 -0.21 3.00 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.12 2.17 5.23 -4.04 -0.02 2.15 16 5 N -0.70 -13.05 5.02 -60.29 -0.30 -13.35 16 6 C 0.53 9.62 6.55 -10.98 -0.07 9.54 16 7 O -0.55 -11.20 15.50 5.56 0.09 -11.11 16 8 C -0.13 -1.79 2.23 -92.51 -0.21 -2.00 16 9 H 0.11 1.27 6.77 -51.93 -0.35 0.92 16 10 C -0.10 -1.15 4.80 -27.31 -0.13 -1.28 16 11 C -0.12 -0.96 5.27 -27.97 -0.15 -1.10 16 12 C -0.14 -1.02 5.73 -27.36 -0.16 -1.18 16 13 C 0.11 0.89 5.87 -3.67 -0.02 0.87 16 14 N -0.61 -7.75 2.85 -181.08 -0.52 -8.27 16 15 C 0.08 1.05 10.35 59.85 0.62 1.67 16 16 C 0.52 8.42 6.53 -11.23 -0.07 8.34 16 17 O -0.50 -10.99 15.37 5.56 0.09 -10.91 16 18 N -0.72 -18.17 4.56 -53.42 -0.24 -18.41 16 19 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -28.27 13.06 55.49 0.72 -27.55 16 23 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 7.97 8.06 -40.82 -0.33 7.64 16 33 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 34 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 37 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 40 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.16 7.38 -51.93 -0.38 0.78 16 43 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 44 H 0.39 10.90 7.80 -40.82 -0.32 10.58 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -34.83 360.74 -7.58 -42.41 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -7.51 Total: 14.25 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.31 Total: 10.16 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.34 Total: -67.57 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.83 -7.58 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.327 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds