Wall clock time and date at job start Tue Mar 31 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47277 * 239.99396 * 2 1 3 5 5 N 1.46505 * 109.46974 * 185.00197 * 4 2 1 6 6 C 1.34778 * 119.99781 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00000 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99649 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.79378 * 300.49521 * 8 6 5 10 10 C 1.53061 * 109.62946 * 179.97438 * 8 6 5 11 11 C 1.51796 * 110.70640 * 155.36320 * 10 8 6 12 12 C 1.51772 * 113.81030 * 66.82828 * 11 10 8 13 13 C 1.52992 * 110.88397 * 292.99404 * 12 11 10 14 14 N 1.47193 * 108.66022 * 86.46874 * 13 12 11 15 15 C 1.46503 * 119.78146 * 108.02570 * 14 13 12 16 16 C 1.33366 * 120.43082 * 288.03722 * 14 13 12 17 17 O 1.21278 * 119.89262 * 180.28342 * 16 14 13 18 18 N 1.46507 * 109.46681 * 119.99489 * 2 1 3 19 19 C 1.36928 * 120.00053 * 274.99893 * 18 2 1 20 20 H 1.08002 * 119.99939 * 0.02562 * 19 18 2 21 21 C 1.38816 * 120.00139 * 180.02562 * 19 18 2 22 22 N 1.31615 * 119.99729 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99898 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47418 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47082 * 120.00010 * 23 21 19 26 26 H 1.48504 * 109.46542 * 239.99824 * 23 21 19 27 27 H 1.08991 * 109.47447 * 300.00225 * 1 2 3 28 28 H 1.09001 * 109.46472 * 60.00650 * 1 2 3 29 29 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47093 * 65.00439 * 4 2 1 31 31 H 1.08997 * 109.47128 * 305.00136 * 4 2 1 32 32 H 0.97003 * 119.99786 * 359.97438 * 5 4 2 33 33 H 1.09002 * 109.22478 * 35.05700 * 10 8 6 34 34 H 1.08997 * 109.22337 * 275.66245 * 10 8 6 35 35 H 1.09004 * 108.61279 * 187.94569 * 11 10 8 36 36 H 1.09004 * 108.61441 * 305.70481 * 11 10 8 37 37 H 1.08992 * 109.19784 * 53.35710 * 12 11 10 38 38 H 1.09000 * 109.19264 * 172.68303 * 12 11 10 39 39 H 1.09004 * 109.60202 * 206.22526 * 13 12 11 40 40 H 1.09003 * 109.60474 * 326.55067 * 13 12 11 41 41 H 1.09002 * 109.47236 * 89.99873 * 15 14 13 42 42 H 1.09001 * 109.46562 * 209.99383 * 15 14 13 43 43 H 1.09002 * 109.47400 * 329.99109 * 15 14 13 44 44 H 0.97000 * 119.99370 * 95.00454 * 18 2 1 45 45 H 0.97003 * 119.99610 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5002 -0.8265 -1.1904 6 6 4.1732 -1.4285 -2.1909 7 8 3.5702 -1.8836 -3.1396 8 6 5.6752 -1.5361 -2.1307 9 1 6.1147 -0.5402 -2.0757 10 6 6.1895 -2.2575 -3.3789 11 6 7.6293 -1.8722 -3.6665 12 6 8.6144 -2.3576 -2.6190 13 6 8.3847 -1.6473 -1.2836 14 7 7.3561 -2.3825 -0.5299 15 6 7.7379 -3.1671 0.6469 16 6 6.0789 -2.3392 -0.9116 17 8 5.2387 -2.9446 -0.2804 18 7 2.0183 -0.6906 1.1963 19 6 2.1490 -0.0074 2.3758 20 1 1.8918 1.0405 2.4243 21 6 2.6121 -0.6615 3.5092 22 7 2.9251 -1.9386 3.4502 23 14 2.7898 0.2704 5.1184 24 1 2.3750 1.6825 4.9210 25 1 1.9295 -0.3589 6.1524 26 1 4.2068 0.2283 5.5607 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.7518 -0.1585 -2.1370 31 1 1.6054 -1.7199 -1.2950 32 1 3.9825 -0.4622 -0.4317 33 1 5.5679 -1.9859 -4.2321 34 1 6.1310 -3.3343 -3.2207 35 1 7.9147 -2.2892 -4.6324 36 1 7.6932 -0.7857 -3.7274 37 1 8.4896 -3.4313 -2.4799 38 1 9.6295 -2.1562 -2.9612 39 1 9.3137 -1.6305 -0.7137 40 1 8.0486 -0.6264 -1.4654 41 1 7.6822 -2.5390 1.5360 42 1 7.0584 -4.0124 0.7560 43 1 8.7570 -3.5337 0.5242 44 1 2.2490 -1.6317 1.1527 45 1 3.2483 -2.3958 4.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491636072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:48 Heat of formation + Delta-G solvation = -91.532391 kcal Electronic energy + Delta-G solvation = -25589.429101 eV Core-core repulsion = 22026.829219 eV Total energy + Delta-G solvation = -3562.599882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96173 -40.17292 -38.02438 -37.69721 -35.55112 -35.18032 -33.64296 -32.29270 -30.57420 -29.42854 -27.73413 -26.38599 -25.59715 -24.73316 -21.99367 -21.74126 -21.40645 -19.93059 -19.29588 -18.56278 -18.24838 -17.25462 -16.93380 -16.70255 -16.35099 -16.04127 -15.51562 -15.41012 -15.02432 -14.86062 -14.58582 -14.48312 -14.09417 -13.84283 -13.67682 -13.58853 -13.40333 -13.28951 -13.07544 -12.98284 -12.82484 -12.56450 -12.49119 -12.14072 -11.97128 -11.71085 -11.66093 -11.64916 -11.51699 -11.04645 -10.91798 -10.84477 -10.01394 -9.70682 -9.01889 -7.88189 -5.19635 1.39754 1.46455 1.47918 1.57641 1.57687 2.12816 2.26832 2.57199 3.38622 3.44011 3.57345 3.70932 3.86826 3.89931 3.97377 4.09384 4.19747 4.32145 4.38084 4.38815 4.47540 4.59658 4.61830 4.69355 4.71740 4.80020 4.84347 4.92968 5.04346 5.04562 5.07251 5.20939 5.23698 5.26839 5.40646 5.45414 5.54611 5.55096 5.58530 6.29052 6.31592 6.53753 7.12970 7.18268 7.35601 8.09637 8.34166 9.33969 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.005186 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.444618 B = 5397.515468 C = 6907.415867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.063 0.937 4 C 0.123 3.877 5 N -0.701 5.701 6 C 0.526 3.474 7 O -0.579 6.579 8 C -0.118 4.118 9 H 0.151 0.849 10 C -0.091 4.091 11 C -0.117 4.117 12 C -0.136 4.136 13 C 0.097 3.903 14 N -0.605 5.605 15 C 0.084 3.916 16 C 0.509 3.491 17 O -0.576 6.576 18 N -0.733 5.733 19 C -0.237 4.237 20 H 0.081 0.919 21 C -0.074 4.074 22 N -0.965 5.965 23 Si 0.970 3.030 24 H -0.262 1.262 25 H -0.299 1.299 26 H -0.296 1.296 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.405 0.595 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.110 0.890 44 H 0.370 0.630 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.736 4.455 -14.509 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.081 0.919 4 C -0.001 4.001 5 N -0.350 5.350 6 C 0.312 3.688 7 O -0.460 6.460 8 C -0.142 4.142 9 H 0.168 0.832 10 C -0.130 4.130 11 C -0.154 4.154 12 C -0.174 4.174 13 C -0.024 4.024 14 N -0.337 5.337 15 C -0.059 4.059 16 C 0.295 3.705 17 O -0.455 6.455 18 N -0.374 5.374 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.267 4.267 22 N -0.615 5.615 23 Si 0.800 3.200 24 H -0.186 1.186 25 H -0.227 1.227 26 H -0.223 1.223 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.201 0.799 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.873 3.994 -14.717 21.301 hybrid contribution -0.165 -0.413 1.767 1.822 sum 14.709 3.581 -12.950 19.921 Atomic orbital electron populations 1.22227 0.96631 1.00952 1.01548 1.20715 0.93757 0.95596 0.84974 0.91909 1.21597 0.79772 1.00003 0.98765 1.45880 1.08170 1.58189 1.22757 1.20369 0.90058 0.76577 0.81772 1.90612 1.70745 1.49391 1.35273 1.21767 0.92474 1.03624 0.96362 0.83198 1.21134 0.98595 0.98807 0.94423 1.21195 0.91087 1.03073 1.00036 1.21824 1.01232 1.00250 0.94098 1.22312 0.91461 0.95735 0.92846 1.47807 1.06969 1.49462 1.29496 1.21717 1.01856 0.95372 0.86928 1.20366 0.83072 0.81915 0.85116 1.90888 1.51460 1.46666 1.56518 1.42660 1.78256 1.10261 1.06188 1.19637 1.34933 0.94206 0.88055 0.90131 1.25561 1.03046 0.96677 1.01372 1.69917 1.52304 1.10380 1.28912 0.85124 0.76565 0.78316 0.80027 1.18648 1.22702 1.22300 0.93465 0.90449 0.94370 0.89331 0.94191 0.76017 0.89829 0.93714 0.89717 0.89440 0.92686 0.87093 0.86621 0.89076 0.93292 0.93640 0.87156 0.79864 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.49 71.98 0.68 -4.78 16 2 C 0.16 6.28 3.05 44.99 0.14 6.42 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 C 0.12 4.63 5.23 86.38 0.45 5.08 16 5 N -0.70 -26.67 5.02 -463.05 -2.32 -28.99 16 6 C 0.53 19.24 6.55 87.66 0.57 19.82 16 7 O -0.58 -24.03 15.50 -3.01 -0.05 -24.08 16 8 C -0.12 -3.25 2.23 -12.02 -0.03 -3.28 16 9 H 0.15 2.95 6.77 -2.39 -0.02 2.93 16 10 C -0.09 -2.07 4.80 30.22 0.14 -1.92 16 11 C -0.12 -1.44 5.27 29.79 0.16 -1.28 16 12 C -0.14 -1.43 5.73 30.19 0.17 -1.26 16 13 C 0.10 1.24 5.87 86.24 0.51 1.75 16 14 N -0.61 -14.75 2.85 -846.00 -2.42 -17.17 16 15 C 0.08 2.06 10.35 127.77 1.32 3.38 16 16 C 0.51 16.95 6.53 88.12 0.58 17.53 16 17 O -0.58 -26.88 15.37 -3.02 -0.05 -26.92 16 18 N -0.73 -37.61 4.56 -322.92 -1.47 -39.08 16 19 C -0.24 -13.05 9.93 84.04 0.83 -12.22 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.96 -61.46 13.06 21.65 0.28 -61.18 16 23 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.40 16.11 8.06 -92.71 -0.75 15.36 16 33 H 0.08 2.04 7.13 -2.39 -0.02 2.03 16 34 H 0.04 1.21 7.86 -2.39 -0.02 1.19 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 0.75 7.88 -2.39 -0.02 0.73 16 37 H 0.05 0.80 8.05 -2.39 -0.02 0.78 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.12 0.87 7.92 -2.38 -0.02 0.85 16 40 H 0.09 0.95 6.72 -2.39 -0.02 0.93 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.04 1.43 7.38 -2.39 -0.02 1.41 16 43 H 0.11 1.67 8.03 -2.39 -0.02 1.65 16 44 H 0.37 21.71 7.80 -92.71 -0.72 20.98 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.91 360.74 1.52 -79.38 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.48 Total: 44.06 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 6.00 Total: 25.40 kcal Atomic # 7 Polarization: -140.49 SS G_CDS: -5.93 Total: -146.42 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.09 Total: -51.00 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.91 1.52 -79.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.148 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds