Wall clock time and date at job start Tue Mar 31 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.34773 * 119.99786 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00048 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.62799 * 300.40060 * 8 6 5 10 10 C 1.53052 * 109.63522 * 179.97438 * 8 6 5 11 11 C 1.51789 * 110.74519 * 155.38530 * 10 8 6 12 12 C 1.51777 * 113.81014 * 66.80841 * 11 10 8 13 13 C 1.52987 * 110.88051 * 292.99492 * 12 11 10 14 14 N 1.47198 * 108.66237 * 86.47100 * 13 12 11 15 15 C 1.46502 * 119.78678 * 108.03887 * 14 13 12 16 16 C 1.33372 * 120.42434 * 288.03684 * 14 13 12 17 17 O 1.21279 * 119.88662 * 180.28459 * 16 14 13 18 18 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 19 19 C 1.36945 * 119.99649 * 85.00202 * 18 2 1 20 20 H 1.07997 * 120.00244 * 359.97438 * 19 18 2 21 21 C 1.38812 * 119.99544 * 180.02562 * 19 18 2 22 22 N 1.31625 * 119.99618 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00424 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47074 * 90.00007 * 23 21 19 25 25 H 1.48499 * 109.46948 * 210.00030 * 23 21 19 26 26 H 1.48495 * 109.46973 * 329.99849 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 31 31 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 32 32 H 0.96999 * 119.99782 * 359.97438 * 5 4 2 33 33 H 1.09003 * 109.22661 * 275.71276 * 10 8 6 34 34 H 1.08998 * 109.22230 * 35.09642 * 10 8 6 35 35 H 1.09007 * 108.61652 * 187.93023 * 11 10 8 36 36 H 1.09004 * 108.61340 * 305.68547 * 11 10 8 37 37 H 1.08996 * 109.19895 * 53.36100 * 12 11 10 38 38 H 1.09004 * 109.19418 * 172.68550 * 12 11 10 39 39 H 1.08997 * 109.60512 * 206.21858 * 13 12 11 40 40 H 1.09002 * 109.60921 * 326.54969 * 13 12 11 41 41 H 1.08999 * 109.46977 * 89.99726 * 15 14 13 42 42 H 1.08996 * 109.47094 * 210.00055 * 15 14 13 43 43 H 1.09004 * 109.47073 * 330.00030 * 15 14 13 44 44 H 0.96996 * 120.00792 * 265.00493 * 18 2 1 45 45 H 0.97001 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8843 3.1394 8 6 5.6749 -1.5379 2.1301 9 1 5.9661 -2.0942 1.2393 10 6 6.1891 -2.2589 3.3784 11 6 7.5318 -2.9128 3.1068 12 6 8.6551 -1.9238 2.8544 13 6 8.4304 -1.1661 1.5445 14 7 7.5799 0.0040 1.8170 15 6 8.1608 1.3486 1.7875 16 6 6.2839 -0.1521 2.0906 17 8 5.5911 0.8191 2.3086 18 7 2.0183 -0.6907 -1.1961 19 6 2.1491 -0.0075 -2.3757 20 1 1.8919 1.0403 -2.4244 21 6 2.6113 -0.6621 -3.5092 22 7 2.7375 -0.0054 -4.6429 23 14 3.0556 -2.4746 -3.4253 24 1 1.8582 -3.2930 -3.7441 25 1 4.1306 -2.7667 -4.4073 26 1 3.5312 -2.8048 -2.0579 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7517 -0.1583 2.1369 31 1 1.6054 -1.7199 1.2952 32 1 3.9823 -0.4628 0.4316 33 1 6.2981 -1.5389 4.1895 34 1 5.4708 -3.0242 3.6723 35 1 7.7980 -3.5303 3.9648 36 1 7.4341 -3.5586 2.2342 37 1 8.6970 -1.2111 3.6780 38 1 9.6010 -2.4625 2.7983 39 1 9.3889 -0.8361 1.1438 40 1 7.9382 -1.8192 0.8239 41 1 8.0847 1.7552 0.7791 42 1 7.6205 1.9931 2.4809 43 1 9.2095 1.2979 2.0806 44 1 2.2490 -1.6318 -1.1526 45 1 3.0609 -0.4626 -5.4349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491636073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:50 Heat of formation + Delta-G solvation = -64.678074 kcal Electronic energy + Delta-G solvation = -25463.883433 eV Core-core repulsion = 21902.448042 eV Total energy + Delta-G solvation = -3561.435391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96507 -38.96902 -36.96034 -36.46199 -34.70064 -33.56523 -31.96214 -31.39512 -29.39351 -28.67092 -26.63203 -25.31432 -24.02766 -23.25575 -21.02945 -20.57908 -20.18670 -18.92656 -17.84463 -17.66069 -17.12130 -16.04235 -15.73029 -15.41071 -15.27381 -14.66618 -14.50686 -14.10525 -13.94563 -13.78173 -13.60146 -13.09108 -12.87831 -12.82417 -12.57707 -12.52607 -12.22832 -12.15303 -11.96561 -11.76497 -11.61437 -11.30276 -11.07186 -10.96462 -10.92464 -10.79266 -10.40191 -10.05243 -9.84270 -9.65264 -9.63197 -9.00641 -8.90585 -8.64664 -7.34295 -5.81332 -3.17687 2.51797 2.54702 3.05893 3.30607 3.35702 3.39984 3.47122 4.24482 4.39636 4.43589 4.53678 4.61173 4.77568 4.97918 5.06129 5.08894 5.13988 5.24128 5.28043 5.35215 5.40454 5.42701 5.48570 5.59336 5.66572 5.71317 5.74673 5.84185 5.96640 6.05270 6.06641 6.14355 6.23126 6.25947 6.44075 6.73711 6.78684 7.00334 7.13004 7.87210 7.95237 8.02817 8.37231 8.48878 9.15361 9.87458 10.07389 11.36846 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004913 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.767648 B = 5697.284611 C = 6320.331425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 H 0.063 0.937 4 C 0.114 3.886 5 N -0.703 5.703 6 C 0.535 3.465 7 O -0.548 6.548 8 C -0.131 4.131 9 H 0.119 0.881 10 C -0.097 4.097 11 C -0.123 4.123 12 C -0.141 4.141 13 C 0.106 3.894 14 N -0.611 5.611 15 C 0.083 3.917 16 C 0.525 3.475 17 O -0.527 6.527 18 N -0.748 5.748 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.893 -4.217 15.164 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.010 4.010 5 N -0.352 5.352 6 C 0.319 3.681 7 O -0.427 6.427 8 C -0.155 4.155 9 H 0.136 0.864 10 C -0.135 4.135 11 C -0.161 4.161 12 C -0.179 4.179 13 C -0.017 4.017 14 N -0.344 5.344 15 C -0.059 4.059 16 C 0.311 3.689 17 O -0.403 6.403 18 N -0.392 5.392 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.089 -3.808 15.751 20.830 hybrid contribution 0.656 -1.182 -0.659 1.504 sum 13.744 -4.991 15.092 21.014 Atomic orbital electron populations 1.22316 0.97703 1.01238 1.00936 1.20493 0.92841 0.96186 0.85013 0.91896 1.21737 0.79308 1.00950 0.99054 1.45856 1.08308 1.57821 1.23256 1.19649 0.88151 0.77829 0.82494 1.90648 1.69671 1.49064 1.33280 1.21761 0.94370 0.96174 1.03233 0.86365 1.21125 0.96918 1.00565 0.94854 1.21207 0.93931 0.98228 1.02714 1.21835 0.99119 0.98951 0.98013 1.21923 0.95392 0.87117 0.97280 1.47663 1.08876 1.07924 1.69965 1.21704 0.98234 0.83232 1.02769 1.19931 0.81939 0.90401 0.76619 1.90784 1.60141 1.40841 1.48496 1.42834 1.79701 1.09503 1.07163 1.19083 1.37029 0.95644 0.85521 0.89075 1.24660 1.01484 0.97293 0.95541 1.69702 1.52582 1.35490 1.00228 0.86593 0.78227 0.87061 0.76860 1.21083 1.21803 1.20439 0.91855 0.93804 0.93329 0.91336 0.91878 0.75517 0.91296 0.88853 0.91131 0.91519 0.91122 0.90394 0.89285 0.90230 0.92234 0.90397 0.91261 0.80604 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.16 3.15 3.05 -67.93 -0.21 2.95 16 3 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 4 C 0.11 2.01 5.23 -4.04 -0.02 1.99 16 5 N -0.70 -12.53 5.02 -60.29 -0.30 -12.84 16 6 C 0.53 9.19 6.55 -10.98 -0.07 9.12 16 7 O -0.55 -10.64 15.50 5.56 0.09 -10.56 16 8 C -0.13 -1.74 2.22 -92.54 -0.21 -1.95 16 9 H 0.12 1.35 6.79 -51.93 -0.35 1.00 16 10 C -0.10 -1.07 4.79 -27.32 -0.13 -1.20 16 11 C -0.12 -0.93 5.27 -27.97 -0.15 -1.07 16 12 C -0.14 -0.90 5.73 -27.36 -0.16 -1.06 16 13 C 0.11 0.77 5.87 -3.67 -0.02 0.75 16 14 N -0.61 -6.55 2.86 -181.11 -0.52 -7.07 16 15 C 0.08 0.78 10.35 59.85 0.62 1.40 16 16 C 0.52 7.46 6.53 -11.25 -0.07 7.39 16 17 O -0.53 -9.56 15.37 5.56 0.09 -9.47 16 18 N -0.75 -17.06 4.36 -53.43 -0.23 -17.29 16 19 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 23 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.41 7.57 8.06 -40.82 -0.33 7.24 16 33 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 34 H 0.09 1.13 7.13 -51.93 -0.37 0.76 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 37 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.47 7.92 -51.93 -0.41 0.05 16 40 H 0.08 0.58 6.73 -51.93 -0.35 0.23 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.85 7.38 -51.93 -0.38 0.47 16 43 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 44 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -34.26 357.64 -7.22 -41.49 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.47 Total: 12.27 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -0.32 Total: 9.15 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.28 Total: -65.09 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.17 Total: -20.03 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.26 -7.22 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.192 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds