Wall clock time and date at job start Tue Mar 31 2020 03:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46501 * 109.47084 * 175.00139 * 4 2 1 6 6 C 1.34773 * 119.99786 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00048 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.62799 * 300.40060 * 8 6 5 10 10 C 1.53052 * 109.63522 * 179.97438 * 8 6 5 11 11 C 1.51789 * 110.74519 * 155.38530 * 10 8 6 12 12 C 1.51777 * 113.81014 * 66.80841 * 11 10 8 13 13 C 1.52987 * 110.88051 * 292.99492 * 12 11 10 14 14 N 1.47198 * 108.66237 * 86.47100 * 13 12 11 15 15 C 1.46502 * 119.78678 * 108.03887 * 14 13 12 16 16 C 1.33372 * 120.42434 * 288.03684 * 14 13 12 17 17 O 1.21279 * 119.88662 * 180.28459 * 16 14 13 18 18 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 19 19 C 1.36945 * 119.99649 * 85.00202 * 18 2 1 20 20 H 1.07997 * 120.00244 * 359.97438 * 19 18 2 21 21 C 1.38812 * 119.99544 * 180.02562 * 19 18 2 22 22 N 1.31625 * 119.99618 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00424 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47074 * 90.00007 * 23 21 19 25 25 H 1.48499 * 109.46948 * 210.00030 * 23 21 19 26 26 H 1.48495 * 109.46973 * 329.99849 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 31 31 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 32 32 H 0.96999 * 119.99782 * 359.97438 * 5 4 2 33 33 H 1.09003 * 109.22661 * 275.71276 * 10 8 6 34 34 H 1.08998 * 109.22230 * 35.09642 * 10 8 6 35 35 H 1.09007 * 108.61652 * 187.93023 * 11 10 8 36 36 H 1.09004 * 108.61340 * 305.68547 * 11 10 8 37 37 H 1.08996 * 109.19895 * 53.36100 * 12 11 10 38 38 H 1.09004 * 109.19418 * 172.68550 * 12 11 10 39 39 H 1.08997 * 109.60512 * 206.21858 * 13 12 11 40 40 H 1.09002 * 109.60921 * 326.54969 * 13 12 11 41 41 H 1.08999 * 109.46977 * 89.99726 * 15 14 13 42 42 H 1.08996 * 109.47094 * 210.00055 * 15 14 13 43 43 H 1.09004 * 109.47073 * 330.00030 * 15 14 13 44 44 H 0.96996 * 120.00792 * 265.00493 * 18 2 1 45 45 H 0.97001 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8843 3.1394 8 6 5.6749 -1.5379 2.1301 9 1 5.9661 -2.0942 1.2393 10 6 6.1891 -2.2589 3.3784 11 6 7.5318 -2.9128 3.1068 12 6 8.6551 -1.9238 2.8544 13 6 8.4304 -1.1661 1.5445 14 7 7.5799 0.0040 1.8170 15 6 8.1608 1.3486 1.7875 16 6 6.2839 -0.1521 2.0906 17 8 5.5911 0.8191 2.3086 18 7 2.0183 -0.6907 -1.1961 19 6 2.1491 -0.0075 -2.3757 20 1 1.8919 1.0403 -2.4244 21 6 2.6113 -0.6621 -3.5092 22 7 2.7375 -0.0054 -4.6429 23 14 3.0556 -2.4746 -3.4253 24 1 1.8582 -3.2930 -3.7441 25 1 4.1306 -2.7667 -4.4073 26 1 3.5312 -2.8048 -2.0579 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7517 -0.1583 2.1369 31 1 1.6054 -1.7199 1.2952 32 1 3.9823 -0.4628 0.4316 33 1 6.2981 -1.5389 4.1895 34 1 5.4708 -3.0242 3.6723 35 1 7.7980 -3.5303 3.9648 36 1 7.4341 -3.5586 2.2342 37 1 8.6970 -1.2111 3.6780 38 1 9.6010 -2.4625 2.7983 39 1 9.3889 -0.8361 1.1438 40 1 7.9382 -1.8192 0.8239 41 1 8.0847 1.7552 0.7791 42 1 7.6205 1.9931 2.4809 43 1 9.2095 1.2979 2.0806 44 1 2.2490 -1.6318 -1.1526 45 1 3.0609 -0.4626 -5.4349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491636073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:49 Heat of formation + Delta-G solvation = -89.649447 kcal Electronic energy + Delta-G solvation = -25464.966273 eV Core-core repulsion = 21902.448042 eV Total energy + Delta-G solvation = -3562.518231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.02370 -40.24189 -38.17940 -37.77166 -35.59783 -35.25060 -33.78473 -32.37716 -31.19680 -29.46351 -27.77131 -26.41068 -25.36028 -24.74936 -22.04010 -21.86394 -21.45891 -20.17944 -19.63135 -18.60662 -18.32396 -17.27901 -17.06717 -16.79079 -16.41839 -16.04053 -15.70986 -15.34106 -15.06161 -14.83643 -14.62255 -14.58066 -14.31964 -14.05923 -13.78756 -13.65414 -13.43458 -13.34649 -13.28797 -12.99342 -12.85980 -12.58180 -12.53421 -12.13825 -11.99822 -11.82020 -11.70230 -11.68994 -11.55523 -11.10288 -10.97496 -10.91818 -10.08133 -9.76104 -9.36835 -8.00913 -5.35727 1.36794 1.37204 1.41436 1.46986 1.47951 2.03642 2.21931 2.48454 3.30099 3.32546 3.49018 3.55773 3.67308 3.83465 3.89275 4.06256 4.17338 4.27077 4.30084 4.38981 4.44975 4.55668 4.60521 4.67154 4.68516 4.76589 4.79355 4.91493 4.97982 5.01483 5.03588 5.17772 5.19934 5.23711 5.34701 5.42085 5.48961 5.53158 5.78336 6.21524 6.23443 6.46873 7.01488 7.06705 7.11666 7.80187 8.01583 9.20445 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.004913 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.767648 B = 5697.284611 C = 6320.331425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.048 0.952 4 C 0.122 3.878 5 N -0.708 5.708 6 C 0.528 3.472 7 O -0.574 6.574 8 C -0.126 4.126 9 H 0.142 0.858 10 C -0.090 4.090 11 C -0.120 4.120 12 C -0.134 4.134 13 C 0.095 3.905 14 N -0.603 5.603 15 C 0.080 3.920 16 C 0.518 3.482 17 O -0.580 6.580 18 N -0.746 5.746 19 C -0.227 4.227 20 H 0.056 0.944 21 C -0.059 4.059 22 N -0.983 5.983 23 Si 0.952 3.048 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.250 1.250 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.405 0.595 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.365 0.635 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.993 -6.512 16.271 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.066 0.934 4 C -0.003 4.003 5 N -0.357 5.357 6 C 0.314 3.686 7 O -0.455 6.455 8 C -0.150 4.150 9 H 0.159 0.841 10 C -0.128 4.128 11 C -0.157 4.157 12 C -0.172 4.172 13 C -0.026 4.026 14 N -0.335 5.335 15 C -0.062 4.062 16 C 0.304 3.696 17 O -0.460 6.460 18 N -0.390 5.390 19 C -0.358 4.358 20 H 0.074 0.926 21 C -0.251 4.251 22 N -0.633 5.633 23 Si 0.780 3.220 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.174 1.174 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.199 0.801 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.223 -6.123 16.908 23.561 hybrid contribution -0.006 -0.353 -0.950 1.013 sum 15.216 -6.476 15.958 22.981 Atomic orbital electron populations 1.22191 0.95849 1.01950 1.01401 1.20602 0.94064 0.95313 0.84434 0.93351 1.21624 0.79601 1.01004 0.98025 1.45944 1.08330 1.58005 1.23441 1.20314 0.89847 0.76796 0.81635 1.90626 1.70714 1.50128 1.34010 1.21802 0.91489 0.96408 1.05326 0.84076 1.21114 0.98824 0.99651 0.93252 1.21212 0.92036 0.98489 1.03991 1.21804 0.99936 0.98565 0.96935 1.22310 0.96031 0.86083 0.98176 1.47831 1.08081 1.09625 1.67936 1.21824 0.99927 0.82367 1.02124 1.20126 0.82969 0.90005 0.76457 1.90756 1.61686 1.42255 1.51322 1.42733 1.79967 1.09530 1.06781 1.18970 1.35319 0.94386 0.87115 0.92589 1.25433 1.02291 1.02275 0.95063 1.69886 1.54577 1.37679 1.01158 0.85459 0.77651 0.80827 0.78099 1.21116 1.22098 1.17425 0.93912 0.90828 0.92463 0.90733 0.91261 0.75982 0.92853 0.90109 0.89675 0.90193 0.92036 0.87335 0.86395 0.89718 0.92536 0.92582 0.87443 0.80140 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.49 71.98 0.68 -4.52 16 2 C 0.16 6.25 3.05 44.99 0.14 6.39 16 3 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 4 C 0.12 4.19 5.23 86.38 0.45 4.64 16 5 N -0.71 -24.93 5.02 -463.05 -2.32 -27.25 16 6 C 0.53 17.89 6.55 87.66 0.57 18.47 16 7 O -0.57 -22.14 15.50 -3.03 -0.05 -22.19 16 8 C -0.13 -3.21 2.22 -12.04 -0.03 -3.23 16 9 H 0.14 2.87 6.79 -2.39 -0.02 2.85 16 10 C -0.09 -1.87 4.79 30.21 0.14 -1.72 16 11 C -0.12 -1.40 5.27 29.79 0.16 -1.24 16 12 C -0.13 -1.19 5.73 30.19 0.17 -1.02 16 13 C 0.09 1.04 5.87 86.24 0.51 1.54 16 14 N -0.60 -11.86 2.86 -846.07 -2.42 -14.28 16 15 C 0.08 1.38 10.35 127.77 1.32 2.70 16 16 C 0.52 14.46 6.53 88.11 0.58 15.03 16 17 O -0.58 -21.61 15.37 -3.03 -0.05 -21.65 16 18 N -0.75 -33.62 4.36 -322.94 -1.41 -35.03 16 19 C -0.23 -12.57 10.41 84.03 0.87 -11.70 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 21 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 22 N -0.98 -61.80 13.97 21.65 0.30 -61.49 16 23 Si 0.95 44.06 27.74 68.60 1.90 45.96 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.41 14.91 8.06 -92.71 -0.75 14.16 16 33 H 0.05 1.25 7.86 -2.39 -0.02 1.23 16 34 H 0.08 1.88 7.13 -2.39 -0.02 1.86 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 0.77 7.88 -2.38 -0.02 0.75 16 37 H 0.06 0.70 8.05 -2.39 -0.02 0.68 16 38 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.12 0.66 7.92 -2.39 -0.02 0.64 16 40 H 0.08 0.89 6.73 -2.39 -0.02 0.88 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.23 7.38 -2.39 -0.02 1.22 16 43 H 0.11 1.02 8.03 -2.38 -0.02 1.00 16 44 H 0.37 15.94 5.66 -92.71 -0.52 15.42 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -77.12 357.64 1.66 -75.45 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.34 Total: 38.05 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.04 Total: 22.42 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -5.85 Total: -138.05 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.09 Total: -43.84 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Total: -77.12 1.66 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.196 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds