Wall clock time and date at job start Tue Mar 31 2020 03:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47142 * 2 1 4 4 C 1.52998 * 109.47471 * 120.00305 * 2 1 3 5 5 N 1.46496 * 109.47710 * 174.99984 * 4 2 1 6 6 C 1.34771 * 120.00385 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00163 * 0.02562 * 6 5 4 8 8 C 1.50708 * 120.00148 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.62916 * 92.28653 * 8 6 5 10 10 C 1.53050 * 109.63375 * 212.68621 * 8 6 5 11 11 C 1.51795 * 110.74490 * 34.78817 * 10 8 6 12 12 C 1.51776 * 113.80990 * 66.80810 * 11 10 8 13 13 C 1.52992 * 110.87911 * 292.99512 * 12 11 10 14 14 N 1.47199 * 108.66179 * 86.47042 * 13 12 11 15 15 C 1.46501 * 119.78518 * 108.04101 * 14 13 12 16 16 C 1.33364 * 120.42487 * 288.03963 * 14 13 12 17 17 O 1.21288 * 119.89032 * 180.28903 * 16 14 13 18 18 N 1.46501 * 109.47271 * 240.00136 * 2 1 3 19 19 C 1.36936 * 119.99871 * 84.99935 * 18 2 1 20 20 H 1.08004 * 119.99866 * 359.97438 * 19 18 2 21 21 C 1.38809 * 120.00231 * 180.02562 * 19 18 2 22 22 N 1.31619 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47052 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47153 * 120.00046 * 23 21 19 26 26 H 1.48498 * 109.46925 * 239.99596 * 23 21 19 27 27 H 1.08995 * 109.47560 * 59.99846 * 1 2 3 28 28 H 1.09006 * 109.47106 * 299.99288 * 1 2 3 29 29 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47071 * 295.00409 * 4 2 1 31 31 H 1.09007 * 109.47309 * 54.99827 * 4 2 1 32 32 H 0.97007 * 119.99459 * 0.02562 * 5 4 2 33 33 H 1.09005 * 109.22216 * 155.11365 * 10 8 6 34 34 H 1.08996 * 109.22703 * 274.45966 * 10 8 6 35 35 H 1.08999 * 108.61525 * 187.92339 * 11 10 8 36 36 H 1.08998 * 108.61327 * 305.82527 * 11 10 8 37 37 H 1.08996 * 109.20143 * 53.35676 * 12 11 10 38 38 H 1.08997 * 109.19714 * 172.68408 * 12 11 10 39 39 H 1.09003 * 109.60045 * 206.21967 * 13 12 11 40 40 H 1.08995 * 109.60641 * 326.54895 * 13 12 11 41 41 H 1.08996 * 109.47064 * 89.99865 * 15 14 13 42 42 H 1.09000 * 109.46982 * 209.99426 * 15 14 13 43 43 H 1.08999 * 109.47455 * 329.99592 * 15 14 13 44 44 H 0.97001 * 119.99999 * 265.00301 * 18 2 1 45 45 H 0.96999 * 120.00677 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8834 3.1398 8 6 5.6750 -1.5370 2.1304 9 1 6.1247 -0.6826 2.6363 10 6 6.1248 -2.8324 2.8102 11 6 5.1146 -3.9410 2.5765 12 6 5.0178 -4.3866 1.1288 13 6 4.4366 -3.2744 0.2537 14 7 5.5343 -2.3957 -0.1820 15 6 5.9810 -2.4263 -1.5769 16 6 6.1246 -1.5719 0.6849 17 8 7.0246 -0.8483 0.3142 18 7 2.0183 -0.6906 -1.1962 19 6 2.1491 -0.0074 -2.3757 20 1 1.8918 1.0404 -2.4243 21 6 2.6113 -0.6618 -3.5093 22 7 2.9244 -1.9388 -3.4503 23 14 2.7890 0.2700 -5.1185 24 1 2.3741 1.6821 -4.9212 25 1 4.2058 0.2271 -5.5615 26 1 1.9280 -0.3587 -6.1522 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -0.1584 2.1369 31 1 1.6054 -1.7199 1.2951 32 1 3.9824 -0.4621 0.4318 33 1 7.0899 -3.1347 2.4036 34 1 6.2260 -2.6591 3.8816 35 1 5.3932 -4.8000 3.1870 36 1 4.1334 -3.5910 2.8971 37 1 6.0126 -4.6451 0.7660 38 1 4.3744 -5.2641 1.0662 39 1 3.9501 -3.7117 -0.6182 40 1 3.7102 -2.6992 0.8278 41 1 5.4114 -1.7001 -2.1568 42 1 7.0412 -2.1779 -1.6243 43 1 5.8227 -3.4235 -1.9874 44 1 2.2490 -1.6318 -1.1527 45 1 3.2478 -2.3961 -4.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491636074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:52 Heat of formation + Delta-G solvation = -45.286008 kcal Electronic energy + Delta-G solvation = -26920.439700 eV Core-core repulsion = 23359.845212 eV Total energy + Delta-G solvation = -3560.594488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35914 -38.74341 -36.66344 -36.07186 -34.33439 -33.64589 -32.04968 -31.17842 -28.89487 -28.09231 -26.05698 -25.15029 -23.84045 -23.55861 -21.30557 -20.30892 -19.97776 -18.83694 -17.72490 -17.23191 -16.54000 -16.01468 -15.63650 -15.14883 -14.94055 -14.70449 -14.10232 -13.92453 -13.82891 -13.49779 -13.21721 -13.11193 -12.67329 -12.56634 -12.27403 -12.17161 -12.09874 -11.98767 -11.63440 -11.47933 -11.38241 -10.92948 -10.82989 -10.79539 -10.70095 -10.43748 -10.35081 -10.05422 -9.78227 -9.76038 -9.28928 -9.03961 -8.65704 -8.27868 -7.09333 -5.87588 -3.16601 2.67095 2.80058 3.29490 3.36440 3.40596 3.44591 3.45240 4.47066 4.50188 4.71279 4.83138 4.98969 5.14008 5.25056 5.36886 5.40663 5.47017 5.50293 5.59694 5.73668 5.78694 5.84493 5.90319 5.99885 6.01208 6.04872 6.10319 6.13781 6.15155 6.20576 6.27031 6.47372 6.51799 6.64279 6.68077 6.75124 6.78137 6.95604 7.62494 7.68104 7.72333 8.29214 8.31494 8.40817 9.42797 9.94848 10.31817 11.33492 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.006547 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.420742 B = 4275.583956 C = 5234.142468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.053 0.947 4 C 0.111 3.889 5 N -0.714 5.714 6 C 0.526 3.474 7 O -0.538 6.538 8 C -0.129 4.129 9 H 0.129 0.871 10 C -0.088 4.088 11 C -0.154 4.154 12 C -0.138 4.138 13 C 0.082 3.918 14 N -0.584 5.584 15 C 0.086 3.914 16 C 0.512 3.488 17 O -0.549 6.549 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.005 4.005 22 N -0.924 5.924 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.384 0.616 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -3.606 10.372 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 H 0.071 0.929 4 C -0.013 4.013 5 N -0.367 5.367 6 C 0.313 3.687 7 O -0.417 6.417 8 C -0.153 4.153 9 H 0.147 0.853 10 C -0.126 4.126 11 C -0.191 4.191 12 C -0.176 4.176 13 C -0.041 4.041 14 N -0.315 5.315 15 C -0.056 4.056 16 C 0.298 3.702 17 O -0.428 6.428 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.202 4.202 22 N -0.573 5.573 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.218 0.782 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.025 -3.418 10.662 11.598 hybrid contribution 0.319 0.262 -1.454 1.512 sum 3.344 -3.157 9.208 10.292 Atomic orbital electron populations 1.22348 0.98142 1.01252 1.00439 1.20519 0.92764 0.95849 0.86119 0.92882 1.21764 0.79130 1.01307 0.99086 1.46393 1.08661 1.58365 1.23308 1.19915 0.88850 0.77593 0.82312 1.90590 1.69862 1.47691 1.33565 1.21949 0.94382 1.03336 0.95643 0.85275 1.21012 0.99082 0.91818 1.00680 1.21651 1.02916 0.98020 0.96479 1.21799 1.01782 0.98587 0.95434 1.22487 0.89321 0.91759 1.00570 1.47552 1.34683 1.38920 1.10332 1.21778 1.00172 1.03212 0.80410 1.19955 0.82905 0.80343 0.86980 1.90712 1.30941 1.41897 1.79253 1.42425 1.78079 1.10696 1.05187 1.19234 1.36745 0.93883 0.87256 0.91265 1.24638 1.01940 0.95934 0.97665 1.69638 1.50709 1.08315 1.28598 0.86210 0.77290 0.78901 0.84282 1.20762 1.21878 1.22032 0.92277 0.94200 0.93202 0.91543 0.91587 0.74939 0.91243 0.90255 0.92026 0.87914 0.91821 0.90801 0.88431 0.88461 0.89842 0.91835 0.91490 0.78155 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.49 37.16 0.35 -2.27 16 2 C 0.16 2.79 3.05 -67.93 -0.21 2.58 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C 0.11 1.75 5.04 -4.04 -0.02 1.73 16 5 N -0.71 -11.46 3.52 -60.29 -0.21 -11.67 16 6 C 0.53 8.14 4.19 -10.98 -0.05 8.09 16 7 O -0.54 -9.03 13.93 5.56 0.08 -8.95 16 8 C -0.13 -1.85 3.10 -92.54 -0.29 -2.13 16 9 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 10 C -0.09 -1.08 5.24 -27.32 -0.14 -1.22 16 11 C -0.15 -1.90 5.16 -27.96 -0.14 -2.05 16 12 C -0.14 -1.73 5.74 -27.36 -0.16 -1.89 16 13 C 0.08 1.23 5.57 -3.66 -0.02 1.21 16 14 N -0.58 -9.52 2.51 -181.11 -0.46 -9.97 16 15 C 0.09 1.49 10.35 59.85 0.62 2.11 16 16 C 0.51 8.65 5.14 -11.26 -0.06 8.59 16 17 O -0.55 -11.01 16.60 5.55 0.09 -10.92 16 18 N -0.72 -15.62 4.56 -53.43 -0.24 -15.87 16 19 C -0.24 -5.97 9.93 -15.06 -0.15 -6.12 16 20 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 22 N -0.92 -24.05 13.06 55.49 0.72 -23.32 16 23 Si 0.90 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 32 H 0.41 7.38 6.66 -40.82 -0.27 7.11 16 33 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.48 4.69 -51.93 -0.24 1.24 16 37 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.57 7.92 -51.93 -0.41 1.16 16 40 H 0.10 1.55 3.26 -51.93 -0.17 1.38 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.06 1.08 7.38 -51.93 -0.38 0.69 16 43 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 44 H 0.38 8.77 7.80 -40.82 -0.32 8.45 16 45 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -27.37 349.83 -7.36 -34.73 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.23 Total: 16.27 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.36 Total: 8.40 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.19 Total: -60.83 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.37 -7.36 -34.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.558 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds