Wall clock time and date at job start Tue Mar 31 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47142 * 2 1 4 4 C 1.52998 * 109.47471 * 120.00305 * 2 1 3 5 5 N 1.46496 * 109.47710 * 174.99984 * 4 2 1 6 6 C 1.34771 * 120.00385 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00163 * 0.02562 * 6 5 4 8 8 C 1.50708 * 120.00148 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.62916 * 92.28653 * 8 6 5 10 10 C 1.53050 * 109.63375 * 212.68621 * 8 6 5 11 11 C 1.51795 * 110.74490 * 34.78817 * 10 8 6 12 12 C 1.51776 * 113.80990 * 66.80810 * 11 10 8 13 13 C 1.52992 * 110.87911 * 292.99512 * 12 11 10 14 14 N 1.47199 * 108.66179 * 86.47042 * 13 12 11 15 15 C 1.46501 * 119.78518 * 108.04101 * 14 13 12 16 16 C 1.33364 * 120.42487 * 288.03963 * 14 13 12 17 17 O 1.21288 * 119.89032 * 180.28903 * 16 14 13 18 18 N 1.46501 * 109.47271 * 240.00136 * 2 1 3 19 19 C 1.36936 * 119.99871 * 84.99935 * 18 2 1 20 20 H 1.08004 * 119.99866 * 359.97438 * 19 18 2 21 21 C 1.38809 * 120.00231 * 180.02562 * 19 18 2 22 22 N 1.31619 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47052 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47153 * 120.00046 * 23 21 19 26 26 H 1.48498 * 109.46925 * 239.99596 * 23 21 19 27 27 H 1.08995 * 109.47560 * 59.99846 * 1 2 3 28 28 H 1.09006 * 109.47106 * 299.99288 * 1 2 3 29 29 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47071 * 295.00409 * 4 2 1 31 31 H 1.09007 * 109.47309 * 54.99827 * 4 2 1 32 32 H 0.97007 * 119.99459 * 0.02562 * 5 4 2 33 33 H 1.09005 * 109.22216 * 155.11365 * 10 8 6 34 34 H 1.08996 * 109.22703 * 274.45966 * 10 8 6 35 35 H 1.08999 * 108.61525 * 187.92339 * 11 10 8 36 36 H 1.08998 * 108.61327 * 305.82527 * 11 10 8 37 37 H 1.08996 * 109.20143 * 53.35676 * 12 11 10 38 38 H 1.08997 * 109.19714 * 172.68408 * 12 11 10 39 39 H 1.09003 * 109.60045 * 206.21967 * 13 12 11 40 40 H 1.08995 * 109.60641 * 326.54895 * 13 12 11 41 41 H 1.08996 * 109.47064 * 89.99865 * 15 14 13 42 42 H 1.09000 * 109.46982 * 209.99426 * 15 14 13 43 43 H 1.08999 * 109.47455 * 329.99592 * 15 14 13 44 44 H 0.97001 * 119.99999 * 265.00301 * 18 2 1 45 45 H 0.96999 * 120.00677 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8834 3.1398 8 6 5.6750 -1.5370 2.1304 9 1 6.1247 -0.6826 2.6363 10 6 6.1248 -2.8324 2.8102 11 6 5.1146 -3.9410 2.5765 12 6 5.0178 -4.3866 1.1288 13 6 4.4366 -3.2744 0.2537 14 7 5.5343 -2.3957 -0.1820 15 6 5.9810 -2.4263 -1.5769 16 6 6.1246 -1.5719 0.6849 17 8 7.0246 -0.8483 0.3142 18 7 2.0183 -0.6906 -1.1962 19 6 2.1491 -0.0074 -2.3757 20 1 1.8918 1.0404 -2.4243 21 6 2.6113 -0.6618 -3.5093 22 7 2.9244 -1.9388 -3.4503 23 14 2.7890 0.2700 -5.1185 24 1 2.3741 1.6821 -4.9212 25 1 4.2058 0.2271 -5.5615 26 1 1.9280 -0.3587 -6.1522 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -0.1584 2.1369 31 1 1.6054 -1.7199 1.2951 32 1 3.9824 -0.4621 0.4318 33 1 7.0899 -3.1347 2.4036 34 1 6.2260 -2.6591 3.8816 35 1 5.3932 -4.8000 3.1870 36 1 4.1334 -3.5910 2.8971 37 1 6.0126 -4.6451 0.7660 38 1 4.3744 -5.2641 1.0662 39 1 3.9501 -3.7117 -0.6182 40 1 3.7102 -2.6992 0.8278 41 1 5.4114 -1.7001 -2.1568 42 1 7.0412 -2.1779 -1.6243 43 1 5.8227 -3.4235 -1.9874 44 1 2.2490 -1.6318 -1.1527 45 1 3.2478 -2.3961 -4.2423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491636074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:51 Heat of formation + Delta-G solvation = -62.011450 kcal Electronic energy + Delta-G solvation = -26921.164970 eV Core-core repulsion = 23359.845212 eV Total energy + Delta-G solvation = -3561.319758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.61075 -40.09112 -38.09244 -37.37950 -35.62664 -35.09156 -33.68376 -32.40816 -30.55607 -29.36806 -27.39440 -26.44542 -25.54449 -24.82762 -22.48991 -21.72992 -21.18257 -20.13369 -19.32321 -18.73736 -17.80836 -17.35690 -16.94531 -16.60494 -16.33575 -16.15015 -15.63706 -15.36545 -14.95492 -14.79661 -14.70512 -14.38296 -14.00718 -13.92151 -13.64238 -13.60503 -13.45454 -13.27025 -13.04941 -12.85624 -12.80452 -12.68021 -12.46008 -12.13944 -11.87569 -11.79716 -11.67628 -11.61556 -11.45212 -11.05002 -10.91686 -10.57670 -9.93766 -9.63040 -8.92209 -7.84274 -5.10442 1.41830 1.47785 1.48560 1.52419 1.56909 2.00027 2.14566 2.60070 3.25781 3.48103 3.56886 3.75045 3.89633 3.93405 3.97537 4.07287 4.16107 4.35148 4.40940 4.48510 4.50569 4.65663 4.67913 4.72473 4.76481 4.80902 4.87103 4.99380 5.04241 5.09951 5.12859 5.16921 5.21816 5.27683 5.32074 5.46028 5.55372 5.62530 5.63845 6.35855 6.37276 6.40175 7.00643 7.08838 7.45609 8.14693 8.42569 9.35874 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.006547 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.420742 B = 4275.583956 C = 5234.142468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.048 0.952 4 C 0.120 3.880 5 N -0.718 5.718 6 C 0.531 3.469 7 O -0.546 6.546 8 C -0.123 4.123 9 H 0.143 0.857 10 C -0.086 4.086 11 C -0.150 4.150 12 C -0.131 4.131 13 C 0.084 3.916 14 N -0.582 5.582 15 C 0.096 3.904 16 C 0.511 3.489 17 O -0.586 6.586 18 N -0.726 5.726 19 C -0.238 4.238 20 H 0.065 0.935 21 C -0.050 4.050 22 N -0.938 5.938 23 Si 0.948 3.052 24 H -0.278 1.278 25 H -0.300 1.300 26 H -0.299 1.299 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.378 0.622 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -4.046 12.182 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.066 0.934 4 C -0.003 4.003 5 N -0.369 5.369 6 C 0.319 3.681 7 O -0.426 6.426 8 C -0.147 4.147 9 H 0.160 0.840 10 C -0.124 4.124 11 C -0.187 4.187 12 C -0.169 4.169 13 C -0.039 4.039 14 N -0.311 5.311 15 C -0.047 4.047 16 C 0.298 3.702 17 O -0.467 6.467 18 N -0.367 5.367 19 C -0.370 4.370 20 H 0.083 0.917 21 C -0.245 4.245 22 N -0.588 5.588 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.227 1.227 26 H -0.227 1.227 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.211 0.789 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.847 -3.854 12.512 13.398 hybrid contribution 0.320 0.430 -1.985 2.056 sum 3.167 -3.424 10.527 11.514 Atomic orbital electron populations 1.22209 0.96542 1.01369 1.01150 1.20673 0.93758 0.95383 0.85495 0.93389 1.21677 0.78968 1.01216 0.98486 1.46418 1.08764 1.58583 1.23170 1.20003 0.89179 0.77041 0.81840 1.90598 1.70134 1.48005 1.33831 1.22006 0.93470 1.05301 0.93910 0.83973 1.21092 0.99170 0.90505 1.01645 1.21603 1.01971 0.98835 0.96266 1.21757 1.02060 0.97941 0.95180 1.22505 0.88911 0.92151 1.00295 1.47621 1.34688 1.38990 1.09827 1.21567 0.99455 1.02805 0.80839 1.20400 0.82289 0.79509 0.88003 1.90693 1.32685 1.43271 1.80078 1.42461 1.78328 1.10352 1.05597 1.19400 1.35418 0.93792 0.88350 0.91693 1.25120 1.02996 0.96706 0.99648 1.69724 1.51677 1.08874 1.28513 0.85464 0.76371 0.78206 0.81911 1.20360 1.22730 1.22707 0.94024 0.90997 0.93366 0.89685 0.91637 0.76039 0.90640 0.88274 0.89750 0.89573 0.91451 0.89281 0.89914 0.89112 0.93468 0.91806 0.90162 0.78948 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.49 71.98 0.68 -4.02 16 2 C 0.16 5.36 3.05 44.99 0.14 5.49 16 3 H 0.05 1.71 8.08 -2.39 -0.02 1.70 16 4 C 0.12 3.59 5.04 86.38 0.43 4.03 16 5 N -0.72 -22.32 3.52 -463.06 -1.63 -23.95 16 6 C 0.53 15.54 4.19 87.66 0.37 15.91 16 7 O -0.55 -17.08 13.93 -3.02 -0.04 -17.13 16 8 C -0.12 -3.31 3.10 -12.04 -0.04 -3.34 16 9 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 10 C -0.09 -1.88 5.24 30.21 0.16 -1.72 16 11 C -0.15 -3.28 5.16 29.80 0.15 -3.12 16 12 C -0.13 -3.02 5.74 30.19 0.17 -2.85 16 13 C 0.08 2.46 5.57 86.24 0.48 2.94 16 14 N -0.58 -18.86 2.51 -846.07 -2.13 -20.98 16 15 C 0.10 3.38 10.35 127.77 1.32 4.70 16 16 C 0.51 16.96 5.14 88.11 0.45 17.41 16 17 O -0.59 -23.51 16.60 -3.06 -0.05 -23.56 16 18 N -0.73 -31.46 4.56 -322.94 -1.47 -32.93 16 19 C -0.24 -11.88 9.93 84.03 0.83 -11.04 16 20 H 0.07 3.26 7.83 -2.91 -0.02 3.23 16 21 C -0.05 -2.61 5.50 84.86 0.47 -2.14 16 22 N -0.94 -49.60 13.06 21.65 0.28 -49.31 16 23 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 1.99 8.12 -2.38 -0.02 1.97 16 32 H 0.40 14.38 6.66 -92.70 -0.62 13.76 16 33 H 0.07 1.59 7.86 -2.38 -0.02 1.57 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.25 4.69 -2.44 -0.01 2.24 16 37 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.67 7.92 -2.39 -0.02 2.66 16 40 H 0.09 2.81 3.26 -2.39 -0.01 2.80 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.21 7.38 -2.39 -0.02 2.19 16 43 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 44 H 0.38 17.36 7.80 -92.71 -0.72 16.64 16 45 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 Total: -1.00 -58.20 349.83 2.28 -55.93 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.34 Total: 43.80 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.63 Total: 22.26 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -4.95 Total: -127.18 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.09 Total: -40.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -58.20 2.28 -55.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491636074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.083 kcal (2) G-P(sol) polarization free energy of solvation -58.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds