Wall clock time and date at job start Tue Mar 31 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00023 * 2 1 4 4 N 1.34780 * 120.00003 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00091 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.46957 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46931 * 120.63086 * 0.02562 * 8 6 5 10 10 C 1.53622 * 108.54424 * 126.36867 * 9 8 6 11 11 C 1.53036 * 109.24613 * 54.85288 * 10 9 8 12 12 C 1.53046 * 109.53689 * 298.51382 * 11 10 9 13 13 H 1.08997 * 109.52087 * 301.39246 * 12 11 10 14 14 C 1.53002 * 109.49381 * 181.31341 * 12 11 10 15 15 C 1.53003 * 109.46636 * 175.15847 * 14 12 11 16 16 N 1.46506 * 109.46997 * 179.97438 * 15 14 12 17 17 C 1.36931 * 119.99981 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00372 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99722 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99763 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47029 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46878 * 119.99910 * 21 19 17 24 24 H 1.48504 * 109.46655 * 239.99923 * 21 19 17 25 25 C 1.46925 * 120.62933 * 180.27723 * 8 6 5 26 26 H 1.08994 * 109.47551 * 240.00383 * 1 2 3 27 27 H 1.09007 * 109.46596 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46948 * 119.99671 * 1 2 3 29 29 H 0.97003 * 119.99349 * 0.02562 * 4 2 1 30 30 H 1.09004 * 109.47166 * 60.00164 * 5 4 2 31 31 H 1.08994 * 109.47507 * 299.99870 * 5 4 2 32 32 H 1.09000 * 109.58052 * 246.19939 * 9 8 6 33 33 H 1.08995 * 109.58699 * 6.62138 * 9 8 6 34 34 H 1.09003 * 109.63253 * 294.86246 * 10 9 8 35 35 H 1.08996 * 109.45752 * 174.74562 * 10 9 8 36 36 H 1.08995 * 109.46232 * 178.49380 * 11 10 9 37 37 H 1.09000 * 109.46110 * 58.53189 * 11 10 9 38 38 H 1.08996 * 109.47302 * 295.15850 * 14 12 11 39 39 H 1.09000 * 109.47246 * 55.16361 * 14 12 11 40 40 H 1.08998 * 109.47794 * 300.00015 * 15 14 12 41 41 H 1.08994 * 109.46954 * 60.00739 * 15 14 12 42 42 H 0.97007 * 119.99662 * 0.02562 * 16 15 14 43 43 H 0.97002 * 119.99687 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.58707 * 353.37218 * 25 8 6 45 45 H 1.09001 * 109.58947 * 113.66077 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1481 -2.5881 0.0022 7 8 3.3600 -3.5100 0.0021 8 7 5.4731 -2.8344 -0.0027 9 6 6.4402 -1.7283 -0.0087 10 6 7.4168 -1.9267 1.1605 11 6 8.0507 -3.3158 1.0580 12 6 6.9597 -4.3847 1.1553 13 1 6.4268 -4.2762 2.0999 14 6 7.5980 -5.7735 1.0857 15 6 6.5230 -6.8402 1.3038 16 7 7.1339 -8.1701 1.2365 17 6 6.3608 -9.2880 1.4031 18 1 5.3007 -9.1893 1.5846 19 6 6.9399 -10.5480 1.3398 20 7 8.2318 -10.6683 1.1192 21 14 5.8853 -12.0730 1.5679 22 1 4.4754 -11.6694 1.8012 23 1 5.9640 -12.9161 0.3480 24 1 6.3785 -12.8456 2.7363 25 6 5.9780 -4.2142 -0.0078 26 1 -0.3634 -0.5137 0.8899 27 1 -0.3633 1.0278 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6958 -2.0072 0.0005 30 1 4.0088 -0.6532 0.8911 31 1 4.0095 -0.6537 -0.8888 32 1 6.9888 -1.7278 -0.9506 33 1 5.9133 -0.7816 0.1101 34 1 6.8795 -1.8408 2.1050 35 1 8.1966 -1.1666 1.1152 36 1 8.7643 -3.4502 1.8708 37 1 8.5669 -3.4098 0.1026 38 1 8.0560 -5.9142 0.1067 39 1 8.3602 -5.8624 1.8597 40 1 6.0648 -6.6996 2.2828 41 1 5.7608 -6.7515 0.5298 42 1 8.0862 -8.2587 1.0739 43 1 8.6365 -11.5488 1.0754 44 1 5.1461 -4.9081 0.1117 45 1 6.4875 -4.4135 -0.9506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495333633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:04 Heat of formation + Delta-G solvation = -76.190468 kcal Electronic energy + Delta-G solvation = -24018.346151 eV Core-core repulsion = 20456.411544 eV Total energy + Delta-G solvation = -3561.934606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73955 -39.62849 -37.97976 -35.41616 -34.77103 -33.60286 -32.23570 -30.99684 -30.54168 -28.20382 -27.12739 -25.10132 -24.17239 -22.63812 -21.04526 -20.92183 -20.36064 -19.38715 -17.81595 -17.01370 -16.98962 -16.39358 -16.29942 -15.62996 -15.30956 -14.82793 -14.75931 -14.31147 -13.93112 -13.84469 -13.54782 -13.51204 -13.28554 -13.07027 -12.97372 -12.87820 -12.72147 -12.34818 -12.21677 -11.48546 -11.19084 -11.15510 -11.06607 -10.86079 -10.64146 -10.47778 -10.32568 -10.23772 -10.10680 -9.90060 -9.64108 -9.54690 -8.86029 -8.83861 -6.88745 -5.74078 -3.02290 2.23416 2.32393 2.45427 3.05288 3.45377 3.51098 3.53565 4.04921 4.43576 4.50498 4.62373 4.64775 4.73889 4.86794 4.88833 4.91091 4.98880 5.03782 5.07298 5.16050 5.35726 5.46919 5.53455 5.56899 5.57835 5.65011 5.73853 5.85128 5.90797 5.94610 6.00687 6.16374 6.18986 6.30352 6.41801 6.44628 6.88156 6.91428 7.08679 7.14602 7.74070 7.80010 7.85787 8.45305 9.56296 10.14762 10.49377 11.49099 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002837 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.397733 B = 9867.484610 C =11271.736934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.720 5.720 5 C 0.100 3.900 6 C 0.508 3.492 7 O -0.534 6.534 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.135 4.135 11 C -0.116 4.116 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.119 4.119 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.114 3.886 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.414 0.586 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.101 0.899 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 24.525 -2.742 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.376 5.376 5 C -0.027 4.027 6 C 0.295 3.705 7 O -0.411 6.411 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.115 4.115 13 H 0.092 0.908 14 C -0.157 4.157 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.008 4.008 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.295 24.670 -2.720 25.870 hybrid contribution -0.242 -1.362 0.095 1.386 sum -7.537 23.309 -2.625 24.637 Atomic orbital electron populations 1.21902 0.91054 1.05622 1.04669 1.20852 0.90838 0.82958 0.75280 1.90723 1.70916 1.31427 1.49824 1.45841 1.06006 1.10123 1.75639 1.21099 0.82423 0.94634 1.04571 1.20458 0.82583 0.90943 0.76536 1.90729 1.54579 1.45846 1.49987 1.48101 1.04928 1.08271 1.72521 1.21953 0.91304 0.89234 0.99623 1.21996 0.98653 0.98236 0.98387 1.21605 0.97762 0.93380 1.02647 1.21455 0.95896 0.95431 0.98729 0.90763 1.21735 0.99103 0.92540 1.02329 1.20709 0.93931 0.85358 0.97668 1.42384 1.08641 0.99830 1.86982 1.19302 0.91927 0.84983 1.40562 0.91144 1.24747 0.95935 0.97533 1.02989 1.69673 1.09445 1.22456 1.56840 0.86112 0.79389 0.83442 0.77275 1.20516 1.21863 1.21887 1.21880 0.98820 0.81454 0.98633 0.89116 0.88793 0.89147 0.74804 0.88424 0.88457 0.90694 0.89760 0.91363 0.90544 0.91284 0.91563 0.91731 0.91469 0.96548 0.96222 0.78357 0.93618 0.88087 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.32 36.01 0.37 -0.57 16 2 C 0.51 4.81 7.94 -10.98 -0.09 4.72 16 3 O -0.55 -7.22 17.09 5.56 0.09 -7.12 16 4 N -0.72 -6.49 5.53 -61.48 -0.34 -6.83 16 5 C 0.10 0.89 4.50 -5.20 -0.02 0.87 16 6 C 0.51 5.78 7.77 -10.98 -0.09 5.70 16 7 O -0.53 -7.98 15.08 5.55 0.08 -7.90 16 8 N -0.61 -6.29 2.97 -172.53 -0.51 -6.80 16 9 C 0.10 0.73 6.37 -3.48 -0.02 0.71 16 10 C -0.13 -0.98 6.10 -26.39 -0.16 -1.14 16 11 C -0.12 -1.09 5.17 -26.69 -0.14 -1.23 16 12 C -0.10 -1.16 2.34 -90.51 -0.21 -1.37 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.12 -1.84 4.80 -26.73 -0.13 -1.97 16 15 C 0.15 3.09 6.02 -4.04 -0.02 3.06 16 16 N -0.73 -19.11 5.60 -59.91 -0.34 -19.44 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -28.75 13.06 55.49 0.72 -28.03 16 21 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.11 1.42 5.32 -3.73 -0.02 1.40 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.50 8.12 -51.92 -0.42 0.07 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.41 3.58 7.44 -40.82 -0.30 3.27 16 30 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16 31 H 0.10 0.78 7.93 -51.93 -0.41 0.36 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 5.94 -51.93 -0.31 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.41 6.70 -51.93 -0.35 0.07 16 42 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.10 1.55 5.72 -51.93 -0.30 1.25 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -35.57 363.37 -8.03 -43.60 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.42 Total: 6.58 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.78 Total: 2.62 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.46 Total: -61.10 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.18 Total: -15.02 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.57 -8.03 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495333633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.593 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds