Wall clock time and date at job start Tue Mar 31 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46800 * 2 1 4 4 C 1.52994 * 109.46834 * 119.99636 * 2 1 3 5 5 N 1.46499 * 109.47471 * 294.99942 * 4 2 1 6 6 C 1.36933 * 120.00151 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00087 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99748 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00042 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47476 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47001 * 120.00547 * 10 8 6 13 13 H 1.48497 * 109.47028 * 240.00163 * 10 8 6 14 14 C 1.52999 * 109.46905 * 239.99504 * 2 1 3 15 15 N 1.46500 * 109.47136 * 65.00364 * 14 2 1 16 16 C 1.34776 * 120.00127 * 179.97438 * 15 14 2 17 17 O 1.21284 * 119.99923 * 359.97438 * 16 15 14 18 18 C 1.50707 * 120.00072 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.60187 * 295.00393 * 18 16 15 20 20 C 1.53344 * 109.60042 * 55.49183 * 18 16 15 21 21 C 1.53056 * 108.44102 * 52.23966 * 20 18 16 22 22 C 1.50177 * 109.89434 * 48.88354 * 21 20 18 23 23 O 1.21279 * 118.24829 * 162.39231 * 22 21 20 24 24 N 1.33352 * 123.50797 * 342.41961 * 22 21 20 25 25 C 1.45756 * 124.10621 * 2.24452 * 24 22 21 26 26 H 1.08991 * 109.47013 * 300.00173 * 1 2 3 27 27 H 1.09000 * 109.46941 * 60.00501 * 1 2 3 28 28 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47343 * 55.00296 * 4 2 1 30 30 H 1.09003 * 109.46977 * 174.99844 * 4 2 1 31 31 H 0.97000 * 120.00150 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99433 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46916 * 184.99518 * 14 2 1 34 34 H 1.08992 * 109.47591 * 304.99898 * 14 2 1 35 35 H 0.97004 * 120.00047 * 359.97438 * 15 14 2 36 36 H 1.08999 * 109.47662 * 59.99643 * 19 18 16 37 37 H 1.08998 * 109.47155 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.46862 * 299.99943 * 19 18 16 39 39 H 1.08999 * 109.67018 * 171.96185 * 20 18 16 40 40 H 1.09002 * 109.67579 * 292.48967 * 20 18 16 41 41 H 1.08997 * 109.40252 * 288.75679 * 21 20 18 42 42 H 1.09004 * 109.32905 * 168.97354 * 21 20 18 43 43 H 0.96996 * 117.94793 * 182.21738 * 24 22 21 44 44 H 1.09001 * 109.30174 * 220.59051 * 25 24 22 45 45 H 1.09006 * 109.30281 * 101.21409 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0010 -0.4206 3.6856 7 1 2.5620 -1.3380 3.7865 8 6 1.6342 0.2966 4.8161 9 7 0.9510 1.4149 4.6930 10 14 2.1103 -0.3252 6.5119 11 1 2.8702 -1.5941 6.3787 12 1 2.9561 0.6887 7.1915 13 1 0.8836 -0.5643 7.3139 14 6 2.0400 -0.7214 -1.2492 15 7 1.6525 0.0352 -2.4424 16 6 1.9965 -0.4133 -3.6659 17 8 2.6272 -1.4430 -3.7791 18 6 1.5973 0.3647 -4.8934 19 6 0.0731 0.3691 -5.0250 20 6 2.1115 1.8048 -4.7793 21 6 3.6088 1.7609 -4.4651 22 6 4.3021 0.8224 -5.4105 23 8 5.5066 0.9071 -5.5231 24 7 3.6639 -0.0989 -6.1333 25 6 2.2177 -0.2800 -6.1335 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6054 -1.7197 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 1.1483 0.8592 2.3518 32 1 0.6944 1.9158 5.4830 33 1 3.1264 -0.7995 -1.2056 34 1 1.6055 -1.7199 -1.2951 35 1 1.1483 0.8590 -2.3518 36 1 -0.3666 0.8342 -4.1427 37 1 -0.2132 0.9319 -5.9135 38 1 -0.2870 -0.6559 -5.1130 39 1 1.9498 2.3278 -5.7219 40 1 1.5831 2.3208 -3.9776 41 1 3.7540 1.4161 -3.4413 42 1 4.0297 2.7605 -4.5735 43 1 4.1955 -0.6850 -6.6943 44 1 1.9880 -1.3455 -6.1388 45 1 1.7970 0.1805 -7.0275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495728021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:27 Heat of formation + Delta-G solvation = -81.359961 kcal Electronic energy + Delta-G solvation = -24777.574027 eV Core-core repulsion = 21215.415254 eV Total energy + Delta-G solvation = -3562.158772 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39701 -39.34565 -37.22807 -36.43142 -34.62708 -33.74477 -32.33916 -31.74090 -30.04055 -26.78630 -26.62466 -25.53867 -24.64737 -23.47441 -22.27779 -20.92924 -20.24514 -18.95525 -17.46448 -17.12528 -16.71138 -16.42272 -16.06701 -16.01516 -15.19542 -14.86824 -14.56267 -14.32627 -14.14872 -13.83988 -13.61325 -13.42871 -13.11091 -13.03589 -12.85118 -12.62955 -12.57313 -12.34497 -12.09814 -11.78769 -11.62495 -11.25199 -11.09353 -10.94740 -10.74714 -10.60909 -10.46226 -10.06646 -9.97939 -9.85782 -9.68291 -9.29995 -9.11378 -8.90320 -6.94647 -5.79455 -3.07771 2.44064 2.48826 2.96752 3.07667 3.42340 3.48559 3.50479 3.93372 4.07028 4.20841 4.35313 4.57284 4.58334 4.84184 4.91373 4.99383 5.08127 5.14509 5.15996 5.17926 5.27570 5.33022 5.40335 5.46067 5.55646 5.58110 5.62630 5.75422 5.90468 5.93867 6.06143 6.18562 6.33466 6.40543 6.54524 6.60743 6.73446 6.82405 7.10403 7.35715 7.69331 8.02251 8.05894 8.39760 9.51266 10.08031 10.42805 11.43600 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.002854 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.142844 B = 9807.319054 C =10168.578394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.532 6.532 18 C -0.100 4.100 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.522 3.478 23 O -0.560 6.560 24 N -0.710 5.710 25 C 0.134 3.866 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.401 0.599 44 H 0.087 0.913 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 0.937 -24.807 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.373 5.373 16 C 0.303 3.697 17 O -0.409 6.409 18 C -0.103 4.103 19 C -0.196 4.196 20 C -0.150 4.150 21 C -0.183 4.183 22 C 0.309 3.691 23 O -0.439 6.439 24 N -0.361 5.361 25 C 0.009 3.991 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.236 0.764 44 H 0.105 0.895 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.996 0.263 -24.643 24.826 hybrid contribution -0.111 0.086 0.922 0.933 sum -3.107 0.349 -23.721 23.926 Atomic orbital electron populations 1.21786 0.94636 1.01935 1.01449 1.21549 0.96704 1.00489 0.94176 0.90524 1.20572 0.96640 0.94199 0.85384 1.42335 1.66922 1.27676 1.00586 1.19286 1.28617 1.05423 0.83642 0.91104 1.24735 1.01018 0.97391 0.97874 1.69667 1.43652 1.16606 1.28387 0.86109 0.77598 0.77870 0.84589 1.20527 1.21857 1.21871 1.21440 1.00166 0.95289 0.82872 1.46056 1.57498 1.27870 1.05835 1.20251 0.79443 0.85561 0.84439 1.90737 1.39306 1.24292 1.86517 1.21224 0.98494 0.96556 0.94073 1.21777 0.90785 1.03494 1.03518 1.21790 0.94943 0.94162 1.04117 1.21732 0.95504 1.00793 1.00287 1.20051 0.87557 0.80962 0.80502 1.90761 1.14938 1.71597 1.66559 1.45253 1.08071 1.36141 1.46671 1.21224 0.80013 1.02037 0.95807 0.91125 0.93972 0.92819 0.96024 0.96136 0.78220 0.93579 0.91378 0.91287 0.76529 0.91095 0.90799 0.91350 0.89653 0.89606 0.87965 0.87484 0.76365 0.89483 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.82 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.16 3.11 5.65 -4.05 -0.02 3.09 16 5 N -0.73 -18.00 5.33 -59.91 -0.32 -18.32 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.13 1.62 5.06 -4.04 -0.02 1.60 16 15 N -0.72 -7.22 5.06 -60.29 -0.31 -7.53 16 16 C 0.52 5.54 4.73 -10.98 -0.05 5.49 16 17 O -0.53 -7.89 15.57 5.55 0.09 -7.81 16 18 C -0.10 -0.68 0.65 -155.52 -0.10 -0.78 16 19 C -0.14 -0.61 8.45 37.15 0.31 -0.30 16 20 C -0.11 -0.65 4.75 -26.52 -0.13 -0.77 16 21 C -0.14 -1.30 5.50 -28.11 -0.15 -1.45 16 22 C 0.52 6.34 7.44 -11.87 -0.09 6.25 16 23 O -0.56 -9.26 17.78 5.56 0.10 -9.17 16 24 N -0.71 -6.76 5.09 -61.39 -0.31 -7.07 16 25 C 0.13 0.91 5.41 -4.48 -0.02 0.89 16 26 H 0.07 1.16 7.18 -51.93 -0.37 0.78 16 27 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 9.79 6.85 -40.82 -0.28 9.51 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.40 3.09 6.78 -40.82 -0.28 2.82 16 36 H 0.07 0.29 7.94 -51.93 -0.41 -0.12 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 40 H 0.09 0.37 7.59 -51.93 -0.39 -0.03 16 41 H 0.10 1.07 7.38 -51.93 -0.38 0.68 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.40 3.60 8.80 -40.82 -0.36 3.24 16 44 H 0.09 0.63 7.73 -51.93 -0.40 0.23 16 45 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -35.68 360.39 -7.48 -43.16 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.45 Total: 7.79 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.41 Total: 3.31 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.21 Total: -60.05 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.19 Total: -16.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.68 -7.48 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495728021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.196 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds