Wall clock time and date at job start Tue Mar 31 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46945 * 2 1 4 4 C 1.53004 * 109.46810 * 119.99708 * 2 1 3 5 5 N 1.46498 * 109.47192 * 294.99735 * 4 2 1 6 6 C 1.36942 * 119.99843 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99563 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99727 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47100 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47087 * 120.00181 * 10 8 6 13 13 H 1.48504 * 109.47018 * 240.00117 * 10 8 6 14 14 C 1.52995 * 109.47438 * 239.99545 * 2 1 3 15 15 N 1.46507 * 109.46939 * 64.99741 * 14 2 1 16 16 C 1.34780 * 120.00002 * 179.97438 * 15 14 2 17 17 O 1.21286 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99867 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.60430 * 300.00543 * 18 16 15 20 20 C 1.53344 * 109.60334 * 179.67686 * 18 16 15 21 21 C 1.53066 * 108.42814 * 172.55117 * 20 18 16 22 22 C 1.50185 * 109.88817 * 48.89969 * 21 20 18 23 23 O 1.21273 * 118.24262 * 162.44097 * 22 21 20 24 24 N 1.33352 * 123.51046 * 342.42095 * 22 21 20 25 25 C 1.45755 * 124.10543 * 2.22243 * 24 22 21 26 26 H 1.09003 * 109.46666 * 300.00248 * 1 2 3 27 27 H 1.08998 * 109.46721 * 60.00504 * 1 2 3 28 28 H 1.09001 * 109.46701 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47494 * 54.99988 * 4 2 1 30 30 H 1.09007 * 109.46794 * 175.00273 * 4 2 1 31 31 H 0.97003 * 119.99901 * 0.02562 * 5 4 2 32 32 H 0.97001 * 120.00124 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46797 * 305.00544 * 14 2 1 34 34 H 1.08999 * 109.47485 * 185.00083 * 14 2 1 35 35 H 0.96999 * 119.99715 * 0.02562 * 15 14 2 36 36 H 1.09002 * 109.47153 * 299.67338 * 19 18 16 37 37 H 1.09001 * 109.46832 * 179.67529 * 19 18 16 38 38 H 1.09004 * 109.47261 * 59.67510 * 19 18 16 39 39 H 1.09001 * 109.67257 * 292.28869 * 20 18 16 40 40 H 1.08998 * 109.67275 * 52.81858 * 20 18 16 41 41 H 1.09000 * 109.40332 * 169.03088 * 21 20 18 42 42 H 1.08997 * 109.40162 * 288.86465 * 21 20 18 43 43 H 0.97001 * 117.94805 * 182.21967 * 24 22 21 44 44 H 1.09000 * 109.29921 * 220.61107 * 25 24 22 45 45 H 1.08997 * 109.30197 * 101.23861 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0355 2.4424 6 6 2.0020 -0.4201 3.6856 7 1 2.5636 -1.3370 3.7865 8 6 1.6352 0.2972 4.8160 9 7 0.9511 1.4149 4.6930 10 14 2.1125 -0.3239 6.5119 11 1 2.8732 -1.5923 6.3785 12 1 2.9580 0.6908 7.1908 13 1 0.8863 -0.5636 7.3145 14 6 2.0401 -0.7213 -1.2491 15 7 1.6525 0.0352 -2.4424 16 6 1.9966 -0.4133 -3.6659 17 8 2.6267 -1.4434 -3.7791 18 6 1.5983 0.3652 -4.8932 19 6 0.0738 0.4770 -4.9580 20 6 2.1155 -0.3506 -6.1468 21 6 1.5414 0.3544 -7.3782 22 6 1.7475 1.8374 -7.2602 23 8 1.6541 2.5114 -8.2640 24 7 2.0272 2.4527 -6.1106 25 6 2.2135 1.7643 -4.8394 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2953 30 1 3.1264 -0.7994 1.2057 31 1 1.1483 0.8592 2.3517 32 1 0.6945 1.9159 5.4830 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7995 -1.2055 35 1 1.1489 0.8593 -2.3517 36 1 -0.3617 -0.5209 -5.0108 37 1 -0.2115 1.0453 -5.8433 38 1 -0.2914 0.9861 -4.0661 39 1 3.2043 -0.3054 -6.1723 40 1 1.7911 -1.3912 -6.1353 41 1 2.0456 -0.0111 -8.2727 42 1 0.4747 0.1432 -7.4519 43 1 2.1121 3.4189 -6.1210 44 1 1.7351 2.3379 -4.0456 45 1 3.2794 1.6813 -4.6275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495728022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:29 Heat of formation + Delta-G solvation = -80.992586 kcal Electronic energy + Delta-G solvation = -24309.740682 eV Core-core repulsion = 20747.597840 eV Total energy + Delta-G solvation = -3562.142842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39879 -39.70705 -37.31913 -36.65814 -34.51907 -33.79563 -32.68842 -31.17554 -29.96654 -27.49894 -26.63576 -25.46534 -25.08555 -23.24158 -22.27613 -20.90934 -20.14700 -18.74604 -17.89210 -17.15716 -16.86386 -16.51253 -16.15967 -15.80856 -15.40294 -15.03969 -14.84427 -14.55265 -14.14082 -14.03867 -13.76396 -13.57496 -13.13028 -12.91464 -12.69326 -12.64038 -12.38873 -12.28186 -12.12170 -11.99544 -11.51559 -11.30788 -11.11509 -10.97333 -10.77296 -10.63644 -10.49515 -10.13434 -10.09993 -9.92443 -9.71350 -9.53517 -9.17679 -8.92692 -6.97138 -5.81720 -3.10208 2.25665 2.34195 2.80480 2.98360 3.40406 3.46593 3.48483 3.92840 4.12061 4.16264 4.22177 4.55058 4.60144 4.71671 4.86000 4.91387 4.96806 5.08605 5.13161 5.16691 5.25403 5.30503 5.41018 5.51039 5.53340 5.64359 5.72563 5.75038 5.87845 5.89740 6.03001 6.15551 6.30248 6.33375 6.36633 6.58330 6.70360 6.79655 6.87176 7.29825 7.66957 7.80896 7.99066 8.37436 9.48944 10.05669 10.40222 11.41311 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.037327 B = 0.002443 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.947116 B =11456.795127 C =11754.487944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.125 3.875 15 N -0.721 5.721 16 C 0.525 3.475 17 O -0.533 6.533 18 C -0.096 4.096 19 C -0.145 4.145 20 C -0.099 4.099 21 C -0.137 4.137 22 C 0.520 3.480 23 O -0.558 6.558 24 N -0.716 5.716 25 C 0.122 3.878 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.403 0.597 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -0.048 -22.376 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.372 5.372 16 C 0.310 3.690 17 O -0.409 6.409 18 C -0.100 4.100 19 C -0.203 4.203 20 C -0.137 4.137 21 C -0.177 4.177 22 C 0.308 3.692 23 O -0.437 6.437 24 N -0.368 5.368 25 C -0.003 4.003 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.239 0.761 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.504 -0.822 -22.818 22.839 hybrid contribution -0.138 0.772 1.273 1.495 sum -0.642 -0.050 -21.546 21.556 Atomic orbital electron populations 1.21795 0.94639 1.01985 1.01470 1.21559 0.96721 1.00490 0.94202 0.90522 1.20575 0.96622 0.94218 0.85364 1.42343 1.66918 1.27694 1.00601 1.19278 1.28608 1.05453 0.83626 0.91091 1.24739 1.01003 0.97398 0.97895 1.69660 1.43593 1.16634 1.28421 0.86113 0.77616 0.77854 0.84591 1.20527 1.21863 1.21854 1.21465 1.00249 0.95326 0.82783 1.46103 1.57371 1.27807 1.05918 1.20060 0.79367 0.85602 0.84021 1.90731 1.39439 1.24247 1.86453 1.21119 0.98309 0.95318 0.95227 1.21952 0.91656 1.03411 1.03257 1.21532 1.01602 1.00264 0.90343 1.21746 1.04416 0.90900 1.00605 1.20229 0.75366 0.91145 0.82495 1.90773 1.51710 1.66257 1.34956 1.45373 1.72143 1.11293 1.07988 1.21378 1.01359 0.91710 0.85881 0.91115 0.93981 0.92774 0.95994 0.96124 0.78221 0.93555 0.91187 0.91179 0.76523 0.91084 0.91225 0.91424 0.90294 0.89197 0.87687 0.87772 0.76125 0.89658 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.94 37.16 0.33 -1.55 16 2 C -0.11 -1.53 2.46 -90.62 -0.22 -1.75 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.16 3.01 5.65 -4.04 -0.02 2.98 16 5 N -0.73 -17.65 5.33 -59.90 -0.32 -17.96 16 6 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 10 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 15 N -0.72 -6.69 5.09 -60.29 -0.31 -7.00 16 16 C 0.53 5.25 6.48 -10.98 -0.07 5.18 16 17 O -0.53 -7.44 15.89 5.55 0.09 -7.35 16 18 C -0.10 -0.66 0.63 -155.52 -0.10 -0.76 16 19 C -0.15 -0.83 7.75 37.16 0.29 -0.54 16 20 C -0.10 -0.71 4.35 -26.52 -0.12 -0.83 16 21 C -0.14 -0.92 5.40 -28.10 -0.15 -1.07 16 22 C 0.52 4.71 6.90 -11.87 -0.08 4.63 16 23 O -0.56 -7.40 17.78 5.56 0.10 -7.31 16 24 N -0.72 -4.83 5.32 -61.38 -0.33 -5.16 16 25 C 0.12 0.70 5.70 -4.48 -0.03 0.68 16 26 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 27 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.38 9.63 6.85 -40.82 -0.28 9.35 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 2.84 6.73 -40.82 -0.27 2.57 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.39 5.79 -51.93 -0.30 0.09 16 38 H 0.07 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.58 6.96 -51.93 -0.36 0.21 16 43 H 0.40 2.39 8.80 -40.82 -0.36 2.03 16 44 H 0.09 0.34 7.85 -51.93 -0.41 -0.07 16 45 H 0.07 0.46 8.11 -51.93 -0.42 0.03 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -34.22 358.45 -7.40 -41.62 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.30 Total: 6.31 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.44 Total: 1.26 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.23 Total: -56.97 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.19 Total: -14.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.22 -7.40 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495728022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.372 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds