Wall clock time and date at job start Tue Mar 31 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46588 * 2 1 4 4 C 1.46504 * 120.00225 * 90.00316 * 3 2 1 5 5 C 1.53003 * 109.47049 * 89.99101 * 4 3 2 6 6 N 1.46499 * 109.46708 * 180.02562 * 5 4 3 7 7 C 1.36935 * 119.99926 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99877 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00369 * 179.73019 * 7 6 5 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99247 * 11 9 7 13 13 H 1.48496 * 109.47375 * 209.99772 * 11 9 7 14 14 H 1.48502 * 109.46736 * 329.99467 * 11 9 7 15 15 C 1.34776 * 119.99929 * 269.99177 * 3 2 1 16 16 O 1.21281 * 119.99794 * 179.97438 * 15 3 2 17 17 C 1.50699 * 120.00004 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.47072 * 179.97438 * 17 15 3 19 19 H 1.09002 * 110.43325 * 305.69933 * 18 17 15 20 20 C 1.54623 * 110.48833 * 183.15757 * 18 17 15 21 21 C 1.54476 * 101.76810 * 216.52445 * 20 18 17 22 22 N 1.46768 * 105.47398 * 25.41303 * 21 20 18 23 23 C 1.46499 * 124.35035 * 162.98606 * 22 21 20 24 24 C 1.34655 * 111.33215 * 342.87416 * 22 21 20 25 25 O 1.21283 * 125.07112 * 180.52299 * 24 22 21 26 26 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47247 * 299.99748 * 1 2 3 28 28 H 1.08994 * 109.47215 * 60.00338 * 1 2 3 29 29 H 1.08994 * 109.47121 * 239.99790 * 2 1 3 30 30 H 1.09001 * 109.46925 * 119.99912 * 2 1 3 31 31 H 1.09000 * 109.46642 * 329.99350 * 4 3 2 32 32 H 1.08994 * 109.47228 * 209.99688 * 4 3 2 33 33 H 1.08998 * 109.46692 * 60.00504 * 5 4 3 34 34 H 1.08994 * 109.47584 * 300.00368 * 5 4 3 35 35 H 0.97005 * 120.00261 * 0.02562 * 6 5 4 36 36 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47119 * 299.99023 * 17 15 3 38 38 H 1.08996 * 109.47258 * 59.99193 * 17 15 3 39 39 H 1.09009 * 110.96794 * 334.64360 * 20 18 17 40 40 H 1.09000 * 110.97165 * 98.36368 * 20 18 17 41 41 H 1.09005 * 110.25062 * 144.41728 * 21 20 18 42 42 H 1.09003 * 110.24866 * 266.32686 * 21 20 18 43 43 H 1.08991 * 109.47274 * 90.00231 * 23 22 21 44 44 H 1.09002 * 109.47155 * 210.00373 * 23 22 21 45 45 H 1.09003 * 109.46766 * 330.00011 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.7074 1.8314 1.7104 6 7 3.9514 2.5216 2.9794 7 6 5.1836 2.4494 3.5722 8 1 5.9756 1.8833 3.1044 9 6 5.4165 3.1080 4.7718 10 7 4.4529 3.8022 5.3392 11 14 7.0977 3.0101 5.5801 12 1 7.9483 4.1241 5.0897 13 1 6.9454 3.1151 7.0535 14 1 7.7358 1.7131 5.2396 15 6 2.2429 2.0165 -1.1672 16 8 2.6467 3.1602 -1.1672 17 6 1.9915 1.3062 -2.4723 18 6 2.3225 2.2437 -3.6352 19 1 1.7738 3.1805 -3.5369 20 6 1.9977 1.5656 -4.9863 21 6 3.1424 2.0866 -5.8834 22 7 4.2444 2.4036 -4.9674 23 6 5.6373 2.5878 -5.3825 24 6 3.8111 2.5060 -3.6966 25 8 4.5102 2.7686 -2.7410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6878 2.0283 32 1 2.0954 3.1411 1.1384 33 1 4.3882 2.2156 0.9508 34 1 3.8744 0.7623 1.8407 35 1 3.2400 3.0297 3.3998 36 1 4.6157 4.2627 6.1773 37 1 2.6215 0.4186 -2.5302 38 1 0.9435 1.0122 -2.5299 39 1 2.0355 0.4799 -4.8969 40 1 1.0277 1.8905 -5.3627 41 1 3.4490 1.3151 -6.5898 42 1 2.8250 2.9820 -6.4180 43 1 5.8089 3.6367 -5.6235 44 1 6.3008 2.2881 -4.5713 45 1 5.8384 1.9753 -6.2614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497407699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:49 Heat of formation + Delta-G solvation = -50.686193 kcal Electronic energy + Delta-G solvation = -24799.683194 eV Core-core repulsion = 21238.854536 eV Total energy + Delta-G solvation = -3560.828658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77928 -39.33994 -36.37482 -36.01651 -34.51665 -33.88552 -31.70078 -30.19018 -30.05605 -27.60426 -27.02376 -25.41326 -23.59739 -23.14698 -21.83082 -21.26970 -19.56572 -18.58240 -17.28683 -17.07525 -16.73486 -16.41006 -15.81377 -15.57331 -14.84805 -14.51827 -14.04736 -13.93995 -13.83805 -13.71505 -13.41453 -13.16529 -13.04171 -12.87065 -12.79701 -12.53195 -12.44357 -12.38965 -11.95464 -11.81420 -11.65264 -11.26361 -11.10839 -11.05467 -10.85561 -10.77819 -10.53332 -10.01935 -9.68658 -9.60250 -9.31666 -8.81701 -8.75485 -8.30952 -6.80415 -5.65341 -2.93459 2.67171 2.88630 3.00192 3.23096 3.52246 3.56865 3.58651 4.09992 4.15931 4.39988 4.60491 4.71387 4.86070 4.89980 4.97609 5.00238 5.12375 5.14334 5.20651 5.28634 5.28837 5.39683 5.47863 5.51137 5.59367 5.64752 5.69142 5.73349 5.79641 5.82047 5.97297 6.13218 6.20663 6.29727 6.40853 6.76695 6.91926 7.00962 7.13397 7.72124 7.81681 8.27308 8.53113 8.58140 9.64270 10.21936 10.57388 11.57910 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.003622 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.227541 B = 7728.534345 C = 9054.953836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.612 5.612 4 C 0.112 3.888 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.233 4.233 8 H 0.069 0.931 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.507 3.493 16 O -0.507 6.507 17 C -0.121 4.121 18 C -0.108 4.108 19 H 0.115 0.885 20 C -0.129 4.129 21 C 0.106 3.894 22 N -0.637 5.637 23 C 0.098 3.902 24 C 0.513 3.487 25 O -0.486 6.486 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.015 0.985 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 -9.981 -26.241 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.347 5.347 4 C -0.011 4.011 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.364 4.364 8 H 0.087 0.913 9 C -0.212 4.212 10 N -0.585 5.585 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.294 3.706 16 O -0.380 6.380 17 C -0.162 4.162 18 C -0.130 4.130 19 H 0.133 0.867 20 C -0.167 4.167 21 C -0.018 4.018 22 N -0.374 5.374 23 C -0.044 4.044 24 C 0.299 3.701 25 O -0.357 6.357 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.216 0.784 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.489 -9.236 -25.689 28.901 hybrid contribution 0.714 0.054 0.526 0.888 sum -8.775 -9.182 -25.163 28.187 Atomic orbital electron populations 1.22224 0.96101 1.01996 1.02555 1.21536 0.94127 0.83046 1.03286 1.47893 1.66454 1.14042 1.06283 1.21613 0.97864 0.98289 0.83305 1.20917 0.93133 0.95252 0.89298 1.42216 1.12767 1.60869 1.21650 1.19232 0.89328 1.25617 1.02244 0.91268 1.24730 0.97802 1.00453 0.98188 1.69665 1.31573 1.37397 1.19825 0.86163 0.83841 0.77618 0.78456 1.21726 1.21802 1.20805 1.20354 0.78054 0.87198 0.85025 1.90782 1.42743 1.17683 1.86813 1.21581 1.03670 0.98972 0.91968 1.21738 0.95395 1.01228 0.94639 0.86692 1.22697 0.98872 1.01277 0.93842 1.22005 0.86795 1.00331 0.92631 1.48255 1.08286 1.72489 1.08402 1.21484 0.80980 1.01119 1.00775 1.20806 0.90183 0.76782 0.82335 1.90868 1.61635 1.45150 1.38054 0.91665 0.92007 0.92671 0.90823 0.89977 0.90877 0.89924 0.95589 0.96718 0.78353 0.93605 0.88971 0.88180 0.89755 0.88990 0.90572 0.91327 0.92878 0.90697 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.10 1.11 5.93 -4.04 -0.02 1.09 16 3 N -0.61 -9.38 2.47 -173.69 -0.43 -9.81 16 4 C 0.11 2.12 5.52 -4.04 -0.02 2.09 16 5 C 0.14 3.34 6.58 -4.04 -0.03 3.31 16 6 N -0.73 -20.47 5.60 -59.91 -0.34 -20.80 16 7 C -0.23 -7.10 9.99 -15.06 -0.15 -7.25 16 8 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 10 N -0.94 -29.83 13.06 55.49 0.72 -29.11 16 11 Si 0.91 23.78 29.55 -169.99 -5.02 18.75 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 14 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 15 C 0.51 8.20 7.13 -10.99 -0.08 8.12 16 16 O -0.51 -10.74 13.44 -16.80 -0.23 -10.96 16 17 C -0.12 -1.27 3.66 -27.88 -0.10 -1.37 16 18 C -0.11 -1.13 2.55 -90.63 -0.23 -1.36 16 19 H 0.12 1.29 7.96 -51.93 -0.41 0.87 16 20 C -0.13 -0.72 6.70 -25.10 -0.17 -0.88 16 21 C 0.11 0.65 7.35 -3.12 -0.02 0.63 16 22 N -0.64 -6.72 3.34 -180.22 -0.60 -7.33 16 23 C 0.10 0.89 10.96 59.85 0.66 1.55 16 24 C 0.51 7.41 7.30 -10.76 -0.08 7.33 16 25 O -0.49 -9.90 14.98 -16.80 -0.25 -10.15 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.43 7.22 -51.93 -0.37 0.06 16 29 H 0.07 0.63 6.44 -51.93 -0.33 0.29 16 30 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.08 1.74 7.42 -51.93 -0.39 1.35 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 11.03 7.67 -40.82 -0.31 10.72 16 36 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 37 H 0.09 0.88 7.40 -51.93 -0.38 0.50 16 38 H 0.10 0.71 7.18 -51.93 -0.37 0.34 16 39 H 0.08 0.37 7.91 -51.92 -0.41 -0.05 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -40.19 365.88 -8.18 -48.37 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.59 Total: 3.93 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 0.04 Total: 11.58 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.64 Total: -67.04 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.48 Total: -21.11 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -40.19 -8.18 -48.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497407699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.312 kcal (2) G-P(sol) polarization free energy of solvation -40.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds