Wall clock time and date at job start Tue Mar 31 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46588 * 2 1 4 4 C 1.46504 * 120.00225 * 90.00316 * 3 2 1 5 5 C 1.53003 * 109.47049 * 89.99101 * 4 3 2 6 6 N 1.46499 * 109.46708 * 180.02562 * 5 4 3 7 7 C 1.36935 * 119.99926 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99877 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00369 * 179.73019 * 7 6 5 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99247 * 11 9 7 13 13 H 1.48496 * 109.47375 * 209.99772 * 11 9 7 14 14 H 1.48502 * 109.46736 * 329.99467 * 11 9 7 15 15 C 1.34776 * 119.99929 * 269.99177 * 3 2 1 16 16 O 1.21281 * 119.99794 * 179.97438 * 15 3 2 17 17 C 1.50699 * 120.00004 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.47072 * 179.97438 * 17 15 3 19 19 H 1.09002 * 110.43325 * 305.69933 * 18 17 15 20 20 C 1.54623 * 110.48833 * 183.15757 * 18 17 15 21 21 C 1.54476 * 101.76810 * 216.52445 * 20 18 17 22 22 N 1.46768 * 105.47398 * 25.41303 * 21 20 18 23 23 C 1.46499 * 124.35035 * 162.98606 * 22 21 20 24 24 C 1.34655 * 111.33215 * 342.87416 * 22 21 20 25 25 O 1.21283 * 125.07112 * 180.52299 * 24 22 21 26 26 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47247 * 299.99748 * 1 2 3 28 28 H 1.08994 * 109.47215 * 60.00338 * 1 2 3 29 29 H 1.08994 * 109.47121 * 239.99790 * 2 1 3 30 30 H 1.09001 * 109.46925 * 119.99912 * 2 1 3 31 31 H 1.09000 * 109.46642 * 329.99350 * 4 3 2 32 32 H 1.08994 * 109.47228 * 209.99688 * 4 3 2 33 33 H 1.08998 * 109.46692 * 60.00504 * 5 4 3 34 34 H 1.08994 * 109.47584 * 300.00368 * 5 4 3 35 35 H 0.97005 * 120.00261 * 0.02562 * 6 5 4 36 36 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47119 * 299.99023 * 17 15 3 38 38 H 1.08996 * 109.47258 * 59.99193 * 17 15 3 39 39 H 1.09009 * 110.96794 * 334.64360 * 20 18 17 40 40 H 1.09000 * 110.97165 * 98.36368 * 20 18 17 41 41 H 1.09005 * 110.25062 * 144.41728 * 21 20 18 42 42 H 1.09003 * 110.24866 * 266.32686 * 21 20 18 43 43 H 1.08991 * 109.47274 * 90.00231 * 23 22 21 44 44 H 1.09002 * 109.47155 * 210.00373 * 23 22 21 45 45 H 1.09003 * 109.46766 * 330.00011 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.7074 1.8314 1.7104 6 7 3.9514 2.5216 2.9794 7 6 5.1836 2.4494 3.5722 8 1 5.9756 1.8833 3.1044 9 6 5.4165 3.1080 4.7718 10 7 4.4529 3.8022 5.3392 11 14 7.0977 3.0101 5.5801 12 1 7.9483 4.1241 5.0897 13 1 6.9454 3.1151 7.0535 14 1 7.7358 1.7131 5.2396 15 6 2.2429 2.0165 -1.1672 16 8 2.6467 3.1602 -1.1672 17 6 1.9915 1.3062 -2.4723 18 6 2.3225 2.2437 -3.6352 19 1 1.7738 3.1805 -3.5369 20 6 1.9977 1.5656 -4.9863 21 6 3.1424 2.0866 -5.8834 22 7 4.2444 2.4036 -4.9674 23 6 5.6373 2.5878 -5.3825 24 6 3.8111 2.5060 -3.6966 25 8 4.5102 2.7686 -2.7410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6878 2.0283 32 1 2.0954 3.1411 1.1384 33 1 4.3882 2.2156 0.9508 34 1 3.8744 0.7623 1.8407 35 1 3.2400 3.0297 3.3998 36 1 4.6157 4.2627 6.1773 37 1 2.6215 0.4186 -2.5302 38 1 0.9435 1.0122 -2.5299 39 1 2.0355 0.4799 -4.8969 40 1 1.0277 1.8905 -5.3627 41 1 3.4490 1.3151 -6.5898 42 1 2.8250 2.9820 -6.4180 43 1 5.8089 3.6367 -5.6235 44 1 6.3008 2.2881 -4.5713 45 1 5.8384 1.9753 -6.2614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497407699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:49 Heat of formation + Delta-G solvation = -79.961856 kcal Electronic energy + Delta-G solvation = -24800.952682 eV Core-core repulsion = 21238.854536 eV Total energy + Delta-G solvation = -3562.098146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73165 -40.50679 -37.49701 -37.38071 -36.35425 -34.80192 -33.60296 -31.55675 -30.90627 -29.12392 -27.85344 -26.55272 -25.32299 -24.17600 -23.25319 -22.33889 -20.61456 -19.76681 -19.15156 -18.20530 -17.78758 -17.37568 -17.12931 -16.71308 -16.35328 -15.91067 -15.37503 -15.32252 -15.18698 -14.78755 -14.61057 -14.58721 -14.43874 -14.06107 -13.55319 -13.39858 -13.28588 -13.21278 -13.09064 -12.94341 -12.82217 -12.68943 -12.59475 -12.38929 -12.19665 -12.16249 -11.92647 -11.89084 -11.75353 -11.03367 -10.80225 -10.50728 -9.64511 -9.62525 -9.11820 -8.01970 -5.33421 1.41174 1.45706 1.53831 1.64157 1.79965 2.04939 2.15669 2.52449 3.30273 3.35820 3.48852 3.70727 3.89108 4.00091 4.09391 4.16463 4.21030 4.24955 4.35191 4.38651 4.46244 4.50498 4.51621 4.56998 4.58446 4.69313 4.76819 4.81933 4.87974 4.93292 5.02085 5.07474 5.08731 5.13795 5.27212 5.38211 5.44462 5.63774 5.68227 6.17418 6.19562 6.54363 7.24974 7.28416 7.38668 7.95762 8.23346 9.21507 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.003622 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.227541 B = 7728.534345 C = 9054.953836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.613 5.613 4 C 0.128 3.872 5 C 0.152 3.848 6 N -0.742 5.742 7 C -0.256 4.256 8 H 0.068 0.932 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.981 3.019 12 H -0.288 1.288 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.493 3.507 16 O -0.569 6.569 17 C -0.110 4.110 18 C -0.109 4.109 19 H 0.101 0.899 20 C -0.111 4.111 21 C 0.097 3.903 22 N -0.635 5.635 23 C 0.092 3.908 24 C 0.492 3.508 25 O -0.566 6.566 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.052 0.948 33 H -0.013 1.013 34 H 0.027 0.973 35 H 0.376 0.624 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 -12.738 -28.805 33.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.346 5.346 4 C 0.004 3.996 5 C 0.024 3.976 6 N -0.385 5.385 7 C -0.387 4.387 8 H 0.086 0.914 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.808 3.192 12 H -0.216 1.216 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.283 3.717 16 O -0.447 6.447 17 C -0.149 4.149 18 C -0.131 4.131 19 H 0.119 0.881 20 C -0.148 4.148 21 C -0.025 4.025 22 N -0.370 5.370 23 C -0.049 4.049 24 C 0.280 3.720 25 O -0.444 6.444 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.044 0.956 35 H 0.208 0.792 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.164 0.836 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.984 -12.067 -28.350 32.711 hybrid contribution 1.186 0.923 1.228 1.941 sum -9.798 -11.144 -27.121 30.915 Atomic orbital electron populations 1.22171 0.93861 1.03724 1.02353 1.21906 0.95914 0.80226 1.04558 1.48064 1.66149 1.15744 1.04684 1.21175 0.95145 0.97383 0.85937 1.20905 0.95345 0.94810 0.86497 1.42385 1.12050 1.61234 1.22861 1.19583 0.90275 1.25993 1.02865 0.91401 1.25660 1.02026 1.00049 0.98718 1.69822 1.33713 1.38034 1.20144 0.85048 0.78784 0.78030 0.77322 1.21561 1.21036 1.19259 1.21537 0.76485 0.86817 0.86872 1.90757 1.45365 1.20757 1.87782 1.21679 1.06648 0.98481 0.88141 1.21805 0.92216 1.01445 0.97635 0.88084 1.22787 0.99977 1.02196 0.89843 1.22415 0.85559 1.02051 0.92438 1.48520 1.09742 1.70549 1.08184 1.21596 0.80310 1.01896 1.01135 1.21699 0.91875 0.75811 0.82578 1.90822 1.63783 1.48944 1.40806 0.88855 0.93793 0.91368 0.87753 0.90585 0.88932 0.92901 0.99486 0.95558 0.79215 0.93625 0.87413 0.83554 0.87404 0.85779 0.87411 0.90044 0.92961 0.93534 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.24 71.98 0.74 -1.52 16 2 C 0.10 1.84 5.93 86.38 0.51 2.35 16 3 N -0.61 -18.88 2.47 -821.82 -2.03 -20.92 16 4 C 0.13 5.08 5.52 86.38 0.48 5.56 16 5 C 0.15 7.53 6.58 86.38 0.57 8.10 16 6 N -0.74 -43.49 5.60 -343.46 -1.92 -45.42 16 7 C -0.26 -16.06 9.99 84.03 0.84 -15.22 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 10 N -0.97 -62.97 13.06 21.65 0.28 -62.69 16 11 Si 0.98 49.54 29.55 68.60 2.03 51.56 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 15 C 0.49 16.27 7.13 87.66 0.62 16.90 16 16 O -0.57 -25.94 13.44 18.34 0.25 -25.70 16 17 C -0.11 -2.05 3.66 29.85 0.11 -1.94 16 18 C -0.11 -2.11 2.55 -10.80 -0.03 -2.13 16 19 H 0.10 2.24 7.96 -2.39 -0.02 2.22 16 20 C -0.11 -0.71 6.70 31.65 0.21 -0.50 16 21 C 0.10 0.82 7.35 86.83 0.64 1.46 16 22 N -0.63 -12.78 3.34 -842.55 -2.81 -15.60 16 23 C 0.09 1.66 10.96 127.77 1.40 3.06 16 24 C 0.49 14.61 7.30 87.86 0.64 15.25 16 25 O -0.57 -25.06 14.98 18.34 0.27 -24.79 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.78 7.22 -2.39 -0.02 0.76 16 29 H 0.10 1.39 6.44 -2.39 -0.02 1.37 16 30 H 0.08 1.57 8.07 -2.39 -0.02 1.55 16 31 H 0.09 3.27 8.07 -2.39 -0.02 3.26 16 32 H 0.05 2.41 7.42 -2.39 -0.02 2.39 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.38 22.72 7.67 -92.70 -0.71 22.01 16 36 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.11 1.72 7.40 -2.39 -0.02 1.70 16 38 H 0.15 1.35 7.18 -2.39 -0.02 1.34 16 39 H 0.11 0.26 7.91 -2.38 -0.02 0.24 16 40 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.09 7.94 -2.39 -0.02 1.07 16 45 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -96.82 365.88 3.52 -93.30 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.26 Total: 22.89 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 7.20 Total: 27.35 kcal Atomic # 7 Polarization: -138.13 SS G_CDS: -6.49 Total: -144.62 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: 0.52 Total: -50.48 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.56 kcal Total: -96.82 3.52 -93.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497407699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.338 kcal (2) G-P(sol) polarization free energy of solvation -96.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds