Wall clock time and date at job start Tue Mar 31 2020 03:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47171 * 2 1 4 4 C 1.46502 * 120.00094 * 269.99354 * 3 2 1 5 5 C 1.52994 * 109.47187 * 270.00282 * 4 3 2 6 6 N 1.46505 * 109.46988 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99954 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00201 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99778 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00401 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99860 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47363 * 90.00076 * 11 9 7 13 13 H 1.48502 * 109.47322 * 210.00301 * 11 9 7 14 14 H 1.48505 * 109.47226 * 329.99808 * 11 9 7 15 15 C 1.34778 * 120.00371 * 89.99673 * 3 2 1 16 16 O 1.21272 * 120.00281 * 179.97438 * 15 3 2 17 17 C 1.50704 * 119.99564 * 359.97438 * 15 3 2 18 18 H 1.09004 * 109.12934 * 328.56800 * 17 15 3 19 19 C 1.52922 * 109.29940 * 88.05035 * 17 15 3 20 20 C 1.53344 * 108.67170 * 171.06177 * 19 17 15 21 21 C 1.53070 * 108.42803 * 292.46825 * 20 19 17 22 22 C 1.50163 * 109.94751 * 48.69031 * 21 20 19 23 23 O 1.21281 * 118.23064 * 162.62653 * 22 21 20 24 24 N 1.33349 * 123.51741 * 342.90495 * 22 21 20 25 25 C 1.46503 * 117.94200 * 181.94621 * 24 22 21 26 26 H 1.08995 * 109.47678 * 300.00618 * 1 2 3 27 27 H 1.09003 * 109.46604 * 60.00457 * 1 2 3 28 28 H 1.09003 * 109.47245 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47678 * 239.99382 * 2 1 3 30 30 H 1.09004 * 109.47120 * 119.99451 * 2 1 3 31 31 H 1.09008 * 109.46423 * 30.00135 * 4 3 2 32 32 H 1.08994 * 109.47333 * 149.99929 * 4 3 2 33 33 H 1.08998 * 109.47233 * 299.99877 * 5 4 3 34 34 H 1.09003 * 109.47395 * 60.00204 * 5 4 3 35 35 H 0.96995 * 119.99997 * 0.02562 * 6 5 4 36 36 H 0.96999 * 120.00419 * 180.02562 * 10 9 7 37 37 H 1.08992 * 109.60525 * 290.81761 * 19 17 15 38 38 H 1.09002 * 109.60436 * 51.14451 * 19 17 15 39 39 H 1.09000 * 109.67722 * 52.20605 * 20 19 17 40 40 H 1.09000 * 109.67337 * 172.69766 * 20 19 17 41 41 H 1.09002 * 109.40320 * 169.03258 * 21 20 19 42 42 H 1.08997 * 109.39940 * 288.85965 * 21 20 19 43 43 H 1.09004 * 109.46872 * 204.57597 * 25 24 22 44 44 H 1.08993 * 109.47414 * 84.58002 * 25 24 22 45 45 H 1.09003 * 109.47304 * 324.57079 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7103 6 7 3.9517 2.5214 -2.9793 7 6 5.1841 2.4492 -3.5720 8 1 5.9759 1.8831 -3.1041 9 6 5.4154 3.1035 -4.7741 10 7 4.4506 3.7938 -5.3441 11 14 7.0963 3.0044 -5.5830 12 1 7.1375 1.8350 -6.4974 13 1 7.3475 4.2468 -6.3567 14 1 8.1404 2.8526 -4.5379 15 6 2.2429 2.0166 1.1672 16 8 2.6476 3.1598 1.1671 17 6 1.9911 1.3064 2.4723 18 1 1.1713 0.5999 2.3421 19 6 3.2522 0.5468 2.8858 20 6 3.0610 0.0176 4.3123 21 6 3.0165 1.2114 5.2694 22 6 2.0631 2.2489 4.7503 23 8 1.6642 3.0975 5.5194 24 7 1.6276 2.2840 3.4904 25 6 0.7321 3.3772 3.1039 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5818 1.6876 -2.0284 32 1 2.0957 3.1410 -1.1385 33 1 4.3884 2.2154 -0.9506 34 1 3.8746 0.7621 -1.8406 35 1 3.2406 3.0301 -3.3994 36 1 4.6121 4.2507 -6.1844 37 1 3.4160 -0.2883 2.2049 38 1 4.1104 1.2181 2.8543 39 1 2.1255 -0.5383 4.3752 40 1 3.8936 -0.6344 4.5765 41 1 2.6890 0.8748 6.2531 42 1 4.0117 1.6487 5.3492 43 1 0.1298 3.0685 2.2494 44 1 1.3227 4.2528 2.8346 45 1 0.0774 3.6235 3.9398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497491178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:51 Heat of formation + Delta-G solvation = -53.669744 kcal Electronic energy + Delta-G solvation = -25190.359109 eV Core-core repulsion = 21629.401075 eV Total energy + Delta-G solvation = -3560.958034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24786 -39.54660 -36.67710 -36.24916 -34.63523 -34.26977 -31.91812 -30.51333 -30.31320 -27.75300 -27.22570 -25.35159 -23.82088 -23.30862 -22.57327 -21.62702 -19.47683 -18.86114 -17.54468 -17.20909 -16.87270 -16.69306 -16.01461 -15.48870 -14.98393 -14.65249 -14.48636 -14.24644 -14.02572 -13.93787 -13.72243 -13.54363 -13.28533 -13.00738 -12.80187 -12.63686 -12.46949 -12.22038 -11.93059 -11.81385 -11.53525 -11.33153 -11.32260 -11.22909 -11.02457 -10.91271 -10.71060 -10.21060 -10.12039 -9.79829 -9.69861 -8.89691 -8.85881 -8.61756 -6.95893 -5.78133 -3.07687 2.34576 2.42685 2.73730 3.04175 3.42855 3.48149 3.50174 4.08640 4.20979 4.29508 4.39338 4.55684 4.59588 4.69974 4.78257 4.94878 5.02389 5.12393 5.21498 5.33034 5.34091 5.43815 5.46235 5.48494 5.52511 5.54795 5.56650 5.61292 5.74531 5.77727 5.89673 5.94262 5.98928 6.08249 6.10008 6.47110 6.67464 6.83960 7.18991 7.36196 7.68085 7.94859 8.11967 8.40176 9.51221 10.06877 10.41683 11.44717 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.003344 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.562621 B = 8370.551020 C = 8645.015087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.501 3.499 16 O -0.516 6.516 17 C 0.127 3.873 18 H 0.097 0.903 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.136 4.136 22 C 0.519 3.481 23 O -0.553 6.553 24 N -0.586 5.586 25 C 0.082 3.918 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -12.738 18.348 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.026 4.026 3 N -0.336 5.336 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.581 5.581 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.287 3.713 16 O -0.390 6.390 17 C 0.019 3.981 18 H 0.114 0.886 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.175 4.175 22 C 0.308 3.692 23 O -0.432 6.432 24 N -0.319 5.319 25 C -0.060 4.060 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.961 -11.709 18.717 23.827 hybrid contribution 0.695 0.060 -0.939 1.170 sum -8.266 -11.649 17.777 22.805 Atomic orbital electron populations 1.22247 0.95729 1.02460 1.02722 1.21704 0.94518 0.82587 1.03781 1.47958 1.65280 1.14271 1.06114 1.21734 0.98295 0.98408 0.83011 1.20890 0.92611 0.95517 0.89443 1.42206 1.12925 1.60830 1.21552 1.19192 0.89274 1.26208 1.02380 0.91211 1.24748 0.97858 1.00238 0.98049 1.69657 1.31641 1.37314 1.19538 0.86167 0.83639 0.76999 0.79250 1.21678 1.21692 1.20734 1.20643 0.78447 0.87100 0.85157 1.90772 1.43911 1.17476 1.86838 1.21082 0.99654 0.90628 0.86760 0.88559 1.21903 0.96361 1.00655 0.97952 1.21653 1.03539 0.97236 0.93306 1.21687 1.00243 0.94907 1.00699 1.20125 0.81604 0.86385 0.81123 1.90717 1.57530 1.40358 1.54581 1.46940 1.47845 1.27966 1.09173 1.21725 0.93602 0.90306 1.00384 0.92702 0.91710 0.91237 0.89276 0.90447 0.90315 0.89693 0.96028 0.96433 0.78262 0.93449 0.88833 0.89734 0.90759 0.89723 0.87939 0.88019 0.91761 0.91250 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.06 37.16 0.37 -0.84 16 2 C 0.10 0.81 5.72 -4.04 -0.02 0.79 16 3 N -0.60 -7.54 2.47 -173.69 -0.43 -7.97 16 4 C 0.11 1.74 5.52 -4.04 -0.02 1.72 16 5 C 0.14 2.93 6.58 -4.04 -0.03 2.90 16 6 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 11 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.50 6.83 5.81 -10.98 -0.06 6.77 16 16 O -0.52 -9.44 14.65 5.56 0.08 -9.36 16 17 C 0.13 1.26 2.26 -69.52 -0.16 1.10 16 18 H 0.10 0.72 5.70 -51.93 -0.30 0.42 16 19 C -0.13 -1.03 5.15 -26.59 -0.14 -1.17 16 20 C -0.12 -0.70 6.03 -26.52 -0.16 -0.86 16 21 C -0.14 -1.10 6.03 -28.11 -0.17 -1.27 16 22 C 0.52 6.49 7.47 -11.88 -0.09 6.40 16 23 O -0.55 -8.99 16.27 5.56 0.09 -8.90 16 24 N -0.59 -7.06 2.95 -176.51 -0.52 -7.58 16 25 C 0.08 1.04 8.68 59.85 0.52 1.56 16 26 H 0.05 0.38 7.29 -51.93 -0.38 0.00 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 30 H 0.08 0.46 5.35 -51.93 -0.28 0.18 16 31 H 0.08 1.16 8.07 -51.92 -0.42 0.75 16 32 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 0.57 7.01 -51.93 -0.36 0.20 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.72 7.54 -51.93 -0.39 0.32 16 44 H 0.07 1.03 7.45 -51.93 -0.39 0.64 16 45 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -36.18 358.93 -7.56 -43.74 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.36 Total: 4.21 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.20 Total: 9.67 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.56 Total: -62.28 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.17 Total: -18.26 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.18 -7.56 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497491178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.925 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds