Wall clock time and date at job start Tue Mar 31 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00048 * 2 1 4 4 N 1.34771 * 120.00048 * 179.97438 * 2 1 3 5 5 C 1.47428 * 125.64970 * 0.04380 * 4 2 1 6 6 C 1.54913 * 104.83084 * 204.09408 * 5 4 2 7 7 C 1.55156 * 101.58145 * 322.98731 * 6 5 4 8 8 C 1.47024 * 125.65154 * 179.97438 * 4 2 1 9 9 H 1.09001 * 109.88121 * 298.39755 * 8 4 2 10 10 C 1.50707 * 109.88244 * 59.39973 * 8 4 2 11 11 O 1.21281 * 119.99379 * 18.29215 * 10 8 4 12 12 N 1.34765 * 120.00364 * 198.28431 * 10 8 4 13 13 C 1.46508 * 119.99969 * 0.02562 * 12 10 8 14 14 C 1.46495 * 120.00202 * 180.02562 * 12 10 8 15 15 C 1.53000 * 109.47420 * 90.00125 * 14 12 10 16 16 N 1.46501 * 109.47114 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99783 * 90.00299 * 16 15 14 18 18 C 1.36933 * 119.99808 * 269.99573 * 16 15 14 19 19 H 1.07995 * 120.00616 * 23.04983 * 18 16 15 20 20 C 1.38812 * 119.99881 * 203.04727 * 18 16 15 21 21 N 1.31625 * 120.00066 * 12.92822 * 20 18 16 22 22 Si 1.86805 * 120.00088 * 192.92761 * 20 18 16 23 23 H 1.48502 * 109.46791 * 60.00110 * 22 20 18 24 24 H 1.48503 * 109.46993 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47315 * 300.00196 * 22 20 18 26 26 H 1.08999 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47196 * 300.00635 * 1 2 3 28 28 H 1.09007 * 109.46891 * 60.00039 * 1 2 3 29 29 H 1.09001 * 110.36091 * 322.93062 * 5 4 2 30 30 H 1.08994 * 110.36852 * 85.25036 * 5 4 2 31 31 H 1.08999 * 111.00512 * 81.06292 * 6 5 4 32 32 H 1.09005 * 110.99946 * 204.87593 * 6 5 4 33 33 H 1.09006 * 110.71742 * 277.13922 * 7 6 5 34 34 H 1.09000 * 110.71916 * 153.86864 * 7 6 5 35 35 H 1.08995 * 109.46876 * 89.99898 * 13 12 10 36 36 H 1.09001 * 109.47226 * 210.00108 * 13 12 10 37 37 H 1.08999 * 109.46980 * 330.00030 * 13 12 10 38 38 H 1.09000 * 109.47375 * 210.00163 * 14 12 10 39 39 H 1.09003 * 109.47254 * 329.99697 * 14 12 10 40 40 H 1.09000 * 109.46877 * 300.00343 * 15 14 12 41 41 H 1.08995 * 109.47094 * 59.99889 * 15 14 12 42 42 H 1.08994 * 109.47089 * 95.12153 * 17 16 15 43 43 H 1.09007 * 109.46630 * 215.11842 * 17 16 15 44 44 H 1.08998 * 109.46955 * 335.11270 * 17 16 15 45 45 H 0.96997 * 119.99547 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5730 -2.5103 0.0002 6 6 2.6546 -3.4351 0.6123 7 6 3.9549 -2.8232 0.0276 8 6 3.6440 -1.3119 0.0001 9 1 4.0605 -0.8639 -0.9021 10 6 4.2255 -0.6436 1.2193 11 8 3.5154 -0.3927 2.1699 12 7 5.5345 -0.3251 1.2532 13 6 6.3922 -0.6279 0.1047 14 6 6.0999 0.3240 2.4386 15 6 6.5968 -0.7429 3.4162 16 7 7.1617 -0.0937 4.6019 17 6 6.3036 0.2087 5.7502 18 6 8.4916 0.2303 4.6368 19 1 9.0394 0.3636 3.7157 20 6 9.1359 0.3876 5.8563 21 7 8.5534 -0.0165 6.9653 22 14 10.8296 1.1728 5.9235 23 1 10.7583 2.5510 5.3749 24 1 11.2960 1.2237 7.3324 25 1 11.7810 0.3674 5.1164 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.6734 -2.5196 0.6156 30 1 1.3402 -2.8211 -1.0182 31 1 2.6495 -3.3751 1.7007 32 1 2.5223 -4.4646 0.2792 33 1 4.1382 -3.1973 -0.9797 34 1 4.8049 -3.0305 0.6777 35 1 6.3911 0.2181 -0.5825 36 1 7.4092 -0.8144 0.4498 37 1 6.0144 -1.5126 -0.4076 38 1 6.9332 0.9609 2.1415 39 1 5.3334 0.9304 2.9213 40 1 5.7636 -1.3797 3.7133 41 1 7.3633 -1.3491 2.9336 42 1 6.3757 -0.5977 6.4799 43 1 6.6262 1.1435 6.2086 44 1 5.2705 0.3053 5.4162 45 1 9.0038 0.0932 7.8173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667669367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:10 Heat of formation + Delta-G solvation = -31.964222 kcal Electronic energy + Delta-G solvation = -25322.721212 eV Core-core repulsion = 21762.704400 eV Total energy + Delta-G solvation = -3560.016812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80095 -38.86033 -37.26095 -35.91304 -34.82416 -32.31533 -31.49655 -30.34988 -29.22236 -28.10131 -26.42052 -25.72559 -24.31046 -23.19855 -21.81337 -20.70882 -19.83934 -18.56729 -17.37959 -17.16518 -16.58905 -16.19844 -15.46135 -15.31791 -14.95004 -14.63042 -14.44607 -13.81207 -13.64313 -13.49324 -13.23456 -13.01393 -12.89374 -12.77647 -12.64629 -12.47840 -12.23655 -12.11849 -11.96929 -11.59890 -11.42218 -11.28453 -11.19284 -10.81054 -10.78377 -10.47399 -10.15308 -9.93889 -9.86949 -9.75901 -9.66654 -8.73291 -8.60532 -8.29369 -6.66381 -5.66598 -3.14507 2.50579 2.73609 2.94317 3.35741 3.41428 3.46740 3.47992 4.15634 4.23669 4.50837 4.56133 4.66604 4.69452 4.94012 5.00586 5.11751 5.17328 5.23685 5.29391 5.39480 5.44766 5.50093 5.51148 5.58025 5.63654 5.72158 5.79180 5.81485 5.87537 6.03527 6.25139 6.38029 6.61939 6.75009 6.94470 7.04747 7.35170 7.47337 7.70241 7.79899 7.85605 8.10065 8.43930 8.50654 9.28766 9.92451 10.42850 11.37750 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.003442 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.103747 B = 8133.335431 C = 8262.637838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.531 3.469 3 O -0.535 6.535 4 N -0.604 5.604 5 C 0.101 3.899 6 C -0.133 4.133 7 C -0.122 4.122 8 C 0.118 3.882 9 H 0.094 0.906 10 C 0.508 3.492 11 O -0.525 6.525 12 N -0.610 5.610 13 C 0.076 3.924 14 C 0.094 3.906 15 C 0.146 3.854 16 N -0.600 5.600 17 C 0.163 3.837 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.040 0.960 44 H 0.001 0.999 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -8.470 -18.880 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.320 3.680 3 O -0.411 6.411 4 N -0.340 5.340 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.161 4.161 8 C 0.010 3.990 9 H 0.112 0.888 10 C 0.294 3.706 11 O -0.400 6.400 12 N -0.344 5.344 13 C -0.068 4.068 14 C -0.030 4.030 15 C 0.017 3.983 16 N -0.323 5.323 17 C 0.018 3.982 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.019 0.981 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.120 -7.652 -18.146 24.233 hybrid contribution 1.082 0.459 0.088 1.178 sum -13.038 -7.193 -18.058 23.406 Atomic orbital electron populations 1.21857 0.91265 1.04220 1.05234 1.20469 0.90317 0.81980 0.75191 1.90750 1.70512 1.30632 1.49234 1.48347 1.05263 1.06300 1.74063 1.22377 0.97263 0.81655 1.00850 1.22814 0.93490 0.98895 1.01918 1.22643 0.99444 0.91096 1.02885 1.21548 0.82538 0.97301 0.97577 0.88810 1.20586 0.82036 0.79191 0.88815 1.90683 1.59079 1.53122 1.37147 1.47905 1.08182 1.60565 1.17784 1.21832 0.95982 1.00329 0.88650 1.22501 0.98191 0.97378 0.84929 1.20956 0.96220 0.92741 0.88369 1.43827 1.06218 1.68953 1.13276 1.20796 0.88662 0.99905 0.88831 1.19134 0.85614 1.41764 0.92243 0.91547 1.25033 0.97949 1.00629 0.95987 1.70078 1.38262 1.49130 0.97652 0.86335 0.84065 0.79493 0.76611 1.21076 1.21635 1.20963 0.90517 0.88587 0.88851 0.90126 0.90955 0.89871 0.89266 0.89342 0.89145 0.92838 0.90371 0.91578 0.90877 0.90709 0.94555 0.93739 0.95132 0.94158 0.98080 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.19 36.01 0.37 -1.10 16 2 C 0.53 7.42 7.29 -10.99 -0.08 7.34 16 3 O -0.54 -10.17 16.71 5.55 0.09 -10.08 16 4 N -0.60 -7.23 2.79 -164.32 -0.46 -7.69 16 5 C 0.10 0.76 6.39 -2.53 -0.02 0.74 16 6 C -0.13 -1.00 7.09 -24.58 -0.17 -1.18 16 7 C -0.12 -1.02 5.39 -24.90 -0.13 -1.16 16 8 C 0.12 1.45 2.38 -68.10 -0.16 1.28 16 9 H 0.09 1.06 7.27 -51.93 -0.38 0.69 16 10 C 0.51 8.70 6.04 -10.99 -0.07 8.64 16 11 O -0.53 -11.31 15.52 5.56 0.09 -11.22 16 12 N -0.61 -10.01 2.87 -181.57 -0.52 -10.53 16 13 C 0.08 0.87 9.92 59.85 0.59 1.46 16 14 C 0.09 1.89 5.73 -4.04 -0.02 1.87 16 15 C 0.15 3.24 5.97 -4.04 -0.02 3.22 16 16 N -0.60 -16.02 2.92 -181.12 -0.53 -16.55 16 17 C 0.16 4.37 8.98 59.85 0.54 4.91 16 18 C -0.26 -7.29 9.65 -15.06 -0.15 -7.43 16 19 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 20 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 21 N -0.91 -27.30 10.71 55.49 0.59 -26.71 16 22 Si 0.91 22.23 29.57 -169.99 -5.03 17.20 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.08 0.46 6.08 -51.93 -0.32 0.14 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.52 6.94 -51.93 -0.36 0.16 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.84 7.60 -51.93 -0.39 0.44 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.07 0.56 5.59 -51.93 -0.29 0.27 16 38 H 0.07 1.44 8.07 -51.93 -0.42 1.03 16 39 H 0.07 1.71 7.42 -51.93 -0.39 1.33 16 40 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 42 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 43 H 0.04 1.13 7.34 -51.92 -0.38 0.75 16 44 H 0.00 0.02 8.03 -51.93 -0.42 -0.40 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -38.07 361.58 -7.22 -45.29 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.49 Total: -3.73 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 0.58 Total: 18.58 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.92 Total: -61.48 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.18 Total: -21.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.07 -7.22 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667669367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.322 kcal (2) G-P(sol) polarization free energy of solvation -38.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds