Wall clock time and date at job start Tue Mar 31 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00048 * 2 1 4 4 N 1.34771 * 120.00048 * 179.97438 * 2 1 3 5 5 C 1.47428 * 125.64970 * 0.04380 * 4 2 1 6 6 C 1.54913 * 104.83084 * 204.09408 * 5 4 2 7 7 C 1.55156 * 101.58145 * 322.98731 * 6 5 4 8 8 C 1.47024 * 125.65154 * 179.97438 * 4 2 1 9 9 H 1.09001 * 109.88121 * 298.39755 * 8 4 2 10 10 C 1.50707 * 109.88244 * 59.39973 * 8 4 2 11 11 O 1.21281 * 119.99379 * 18.29215 * 10 8 4 12 12 N 1.34765 * 120.00364 * 198.28431 * 10 8 4 13 13 C 1.46508 * 119.99969 * 0.02562 * 12 10 8 14 14 C 1.46495 * 120.00202 * 180.02562 * 12 10 8 15 15 C 1.53000 * 109.47420 * 90.00125 * 14 12 10 16 16 N 1.46501 * 109.47114 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99783 * 90.00299 * 16 15 14 18 18 C 1.36933 * 119.99808 * 269.99573 * 16 15 14 19 19 H 1.07995 * 120.00616 * 23.04983 * 18 16 15 20 20 C 1.38812 * 119.99881 * 203.04727 * 18 16 15 21 21 N 1.31625 * 120.00066 * 12.92822 * 20 18 16 22 22 Si 1.86805 * 120.00088 * 192.92761 * 20 18 16 23 23 H 1.48502 * 109.46791 * 60.00110 * 22 20 18 24 24 H 1.48503 * 109.46993 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47315 * 300.00196 * 22 20 18 26 26 H 1.08999 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47196 * 300.00635 * 1 2 3 28 28 H 1.09007 * 109.46891 * 60.00039 * 1 2 3 29 29 H 1.09001 * 110.36091 * 322.93062 * 5 4 2 30 30 H 1.08994 * 110.36852 * 85.25036 * 5 4 2 31 31 H 1.08999 * 111.00512 * 81.06292 * 6 5 4 32 32 H 1.09005 * 110.99946 * 204.87593 * 6 5 4 33 33 H 1.09006 * 110.71742 * 277.13922 * 7 6 5 34 34 H 1.09000 * 110.71916 * 153.86864 * 7 6 5 35 35 H 1.08995 * 109.46876 * 89.99898 * 13 12 10 36 36 H 1.09001 * 109.47226 * 210.00108 * 13 12 10 37 37 H 1.08999 * 109.46980 * 330.00030 * 13 12 10 38 38 H 1.09000 * 109.47375 * 210.00163 * 14 12 10 39 39 H 1.09003 * 109.47254 * 329.99697 * 14 12 10 40 40 H 1.09000 * 109.46877 * 300.00343 * 15 14 12 41 41 H 1.08995 * 109.47094 * 59.99889 * 15 14 12 42 42 H 1.08994 * 109.47089 * 95.12153 * 17 16 15 43 43 H 1.09007 * 109.46630 * 215.11842 * 17 16 15 44 44 H 1.08998 * 109.46955 * 335.11270 * 17 16 15 45 45 H 0.96997 * 119.99547 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5730 -2.5103 0.0002 6 6 2.6546 -3.4351 0.6123 7 6 3.9549 -2.8232 0.0276 8 6 3.6440 -1.3119 0.0001 9 1 4.0605 -0.8639 -0.9021 10 6 4.2255 -0.6436 1.2193 11 8 3.5154 -0.3927 2.1699 12 7 5.5345 -0.3251 1.2532 13 6 6.3922 -0.6279 0.1047 14 6 6.0999 0.3240 2.4386 15 6 6.5968 -0.7429 3.4162 16 7 7.1617 -0.0937 4.6019 17 6 6.3036 0.2087 5.7502 18 6 8.4916 0.2303 4.6368 19 1 9.0394 0.3636 3.7157 20 6 9.1359 0.3876 5.8563 21 7 8.5534 -0.0165 6.9653 22 14 10.8296 1.1728 5.9235 23 1 10.7583 2.5510 5.3749 24 1 11.2960 1.2237 7.3324 25 1 11.7810 0.3674 5.1164 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.6734 -2.5196 0.6156 30 1 1.3402 -2.8211 -1.0182 31 1 2.6495 -3.3751 1.7007 32 1 2.5223 -4.4646 0.2792 33 1 4.1382 -3.1973 -0.9797 34 1 4.8049 -3.0305 0.6777 35 1 6.3911 0.2181 -0.5825 36 1 7.4092 -0.8144 0.4498 37 1 6.0144 -1.5126 -0.4076 38 1 6.9332 0.9609 2.1415 39 1 5.3334 0.9304 2.9213 40 1 5.7636 -1.3797 3.7133 41 1 7.3633 -1.3491 2.9336 42 1 6.3757 -0.5977 6.4799 43 1 6.6262 1.1435 6.2086 44 1 5.2705 0.3053 5.4162 45 1 9.0038 0.0932 7.8173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667669367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:10 Heat of formation + Delta-G solvation = -59.072096 kcal Electronic energy + Delta-G solvation = -25323.896698 eV Core-core repulsion = 21762.704400 eV Total energy + Delta-G solvation = -3561.192298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85435 -40.09046 -38.31013 -37.69754 -36.43579 -33.63902 -33.05891 -31.38481 -30.34665 -29.31380 -28.04200 -27.50598 -25.67342 -24.43828 -22.81154 -22.35637 -21.01812 -19.67396 -18.85326 -18.36140 -18.14934 -17.41956 -17.01854 -16.33875 -16.32948 -16.09918 -15.59199 -15.39968 -15.14260 -14.66239 -14.48395 -14.26377 -14.05491 -13.93479 -13.77543 -13.65933 -13.37080 -13.19174 -13.11103 -13.02468 -12.81163 -12.75910 -12.51823 -12.31493 -12.21418 -12.03876 -12.01156 -11.93941 -11.69212 -11.02082 -10.90427 -10.70539 -9.81831 -9.70255 -8.80497 -7.85297 -5.37637 1.45194 1.46091 1.49879 1.56128 1.61909 1.92032 2.16562 2.50973 3.28249 3.39520 3.49273 3.59364 3.73283 3.87201 4.01176 4.09558 4.25437 4.28988 4.37262 4.40397 4.52240 4.58072 4.58866 4.67885 4.69836 4.73437 4.81025 4.83698 4.85971 4.93913 4.96719 5.05332 5.06528 5.21219 5.23373 5.30727 5.51062 5.55413 5.61204 6.27526 6.38793 6.49772 7.07899 7.09905 7.20788 7.78143 8.26629 9.18629 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.003442 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.103747 B = 8133.335431 C = 8262.637838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.514 3.486 3 O -0.601 6.601 4 N -0.607 5.607 5 C 0.095 3.905 6 C -0.132 4.132 7 C -0.115 4.115 8 C 0.116 3.884 9 H 0.107 0.893 10 C 0.497 3.503 11 O -0.582 6.582 12 N -0.613 5.613 13 C 0.069 3.931 14 C 0.113 3.887 15 C 0.155 3.845 16 N -0.617 5.617 17 C 0.181 3.819 18 C -0.270 4.270 19 H 0.079 0.921 20 C -0.054 4.054 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.268 1.268 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.008 0.992 43 H 0.018 0.982 44 H 0.011 0.989 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 -10.390 -22.050 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.306 3.694 3 O -0.482 6.482 4 N -0.341 5.341 5 C -0.026 4.026 6 C -0.169 4.169 7 C -0.153 4.153 8 C 0.008 3.992 9 H 0.124 0.876 10 C 0.285 3.715 11 O -0.461 6.461 12 N -0.346 5.346 13 C -0.072 4.072 14 C -0.012 4.012 15 C 0.028 3.972 16 N -0.341 5.341 17 C 0.036 3.964 18 C -0.400 4.400 19 H 0.097 0.903 20 C -0.249 4.249 21 N -0.588 5.588 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.193 1.193 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.037 0.963 44 H 0.030 0.970 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.032 -9.642 -21.395 27.343 hybrid contribution 1.006 1.003 1.042 1.762 sum -13.026 -8.639 -20.353 25.663 Atomic orbital electron populations 1.21889 0.87554 1.06580 1.05700 1.21445 0.92309 0.81634 0.74023 1.90706 1.72113 1.33029 1.52400 1.48607 1.05422 1.07602 1.72465 1.22762 0.97300 0.79092 1.03402 1.22851 0.93112 1.00997 0.99975 1.22762 0.99416 0.87896 1.05257 1.21750 0.82922 0.99542 0.94940 0.87552 1.21667 0.81722 0.78312 0.89795 1.90646 1.60433 1.55413 1.39630 1.48000 1.08932 1.59906 1.17803 1.22151 0.95540 1.02401 0.87156 1.21911 0.97005 0.96257 0.86075 1.20968 0.95852 0.93019 0.87369 1.44065 1.06183 1.69550 1.14284 1.20475 0.89274 0.97891 0.88752 1.19554 0.86190 1.41372 0.92846 0.90324 1.25926 1.02081 1.01319 0.95605 1.70257 1.40001 1.50475 0.98046 0.85207 0.79416 0.78636 0.76354 1.20502 1.22113 1.19348 0.87191 0.89272 0.87101 0.89128 0.86996 0.93191 0.85475 0.84977 0.90166 0.91721 0.89849 0.87993 0.90518 0.94456 0.95760 0.92373 0.97334 0.96309 0.97011 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.19 71.24 0.73 -1.82 16 2 C 0.51 14.24 7.29 87.66 0.64 14.88 16 3 O -0.60 -23.72 16.71 -3.04 -0.05 -23.77 16 4 N -0.61 -13.55 2.79 -792.17 -2.21 -15.76 16 5 C 0.10 1.08 6.39 86.86 0.56 1.64 16 6 C -0.13 -1.57 7.09 31.99 0.23 -1.34 16 7 C -0.12 -1.53 5.39 31.78 0.17 -1.35 16 8 C 0.12 2.65 2.38 44.59 0.11 2.75 16 9 H 0.11 2.15 7.27 -2.39 -0.02 2.13 16 10 C 0.50 17.23 6.04 87.66 0.53 17.76 16 11 O -0.58 -26.36 15.52 -3.03 -0.05 -26.41 16 12 N -0.61 -20.07 2.87 -846.76 -2.43 -22.51 16 13 C 0.07 1.44 9.92 127.77 1.27 2.71 16 14 C 0.11 4.66 5.73 86.38 0.49 5.15 16 15 C 0.16 7.03 5.97 86.38 0.52 7.55 16 16 N -0.62 -33.76 2.92 -726.94 -2.12 -35.88 16 17 C 0.18 10.19 8.98 127.77 1.15 11.33 16 18 C -0.27 -15.32 9.65 84.03 0.81 -14.51 16 19 H 0.08 4.18 7.86 -2.91 -0.02 4.16 16 20 C -0.05 -3.14 5.10 84.86 0.43 -2.71 16 21 N -0.94 -58.03 10.71 21.65 0.23 -57.80 16 22 Si 0.98 45.79 29.57 68.60 2.03 47.82 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H 0.11 0.97 6.08 -2.39 -0.01 0.95 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 1.38 8.14 -2.38 -0.02 1.37 16 29 H 0.09 0.87 6.94 -2.39 -0.02 0.85 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 1.27 7.60 -2.39 -0.02 1.25 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.68 8.07 -2.39 -0.02 1.66 16 37 H 0.10 1.39 5.59 -2.39 -0.01 1.37 16 38 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 39 H 0.04 1.80 7.42 -2.39 -0.02 1.79 16 40 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 41 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 42 H 0.01 0.50 7.34 -2.39 -0.02 0.49 16 43 H 0.02 1.09 7.34 -2.38 -0.02 1.07 16 44 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -88.92 361.58 3.98 -84.94 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.96 Total: 7.32 kcal Atomic # 6 Polarization: 34.43 SS G_CDS: 7.62 Total: 42.05 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -6.54 Total: -131.95 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.10 Total: -50.18 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -88.92 3.98 -84.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667669367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.870 kcal (2) G-P(sol) polarization free energy of solvation -88.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds