Wall clock time and date at job start Tue Mar 31 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46963 * 2 1 4 4 C 1.46499 * 120.00190 * 88.37660 * 3 2 1 5 5 C 1.52994 * 109.47068 * 89.99679 * 4 3 2 6 6 N 1.46499 * 109.47368 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00491 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99809 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00281 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00184 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47366 * 59.99746 * 11 9 7 13 13 H 1.48503 * 109.46890 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46848 * 299.99375 * 11 9 7 15 15 C 1.34770 * 120.00000 * 268.37391 * 3 2 1 16 16 O 1.21286 * 120.00510 * 185.25011 * 15 3 2 17 17 C 1.50701 * 120.00100 * 5.25386 * 15 3 2 18 18 H 1.08997 * 109.67117 * 33.70887 * 17 15 3 19 19 C 1.53346 * 109.67504 * 154.20687 * 17 15 3 20 20 C 1.52932 * 108.66847 * 187.24112 * 19 17 15 21 21 N 1.45751 * 110.50216 * 309.27678 * 20 19 17 22 22 C 1.46504 * 117.94532 * 199.06508 * 21 20 19 23 23 C 1.33348 * 124.11376 * 19.08212 * 21 20 19 24 24 O 1.21278 * 118.25284 * 177.77734 * 23 21 20 25 25 C 1.50178 * 123.50433 * 357.76248 * 23 21 20 26 26 H 1.08999 * 109.47390 * 300.00030 * 1 2 3 27 27 H 1.09000 * 109.47004 * 60.00103 * 1 2 3 28 28 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47004 * 119.99897 * 2 1 3 30 30 H 1.08999 * 109.47390 * 239.99970 * 2 1 3 31 31 H 1.08992 * 109.47352 * 210.00176 * 4 3 2 32 32 H 1.09001 * 109.46693 * 330.00136 * 4 3 2 33 33 H 1.09001 * 109.47668 * 300.00408 * 5 4 3 34 34 H 1.09000 * 109.47413 * 60.00317 * 5 4 3 35 35 H 0.97003 * 119.99829 * 0.02562 * 6 5 4 36 36 H 0.96994 * 120.00245 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.60423 * 307.02244 * 19 17 15 38 38 H 1.09005 * 109.60249 * 67.50915 * 19 17 15 39 39 H 1.08994 * 109.29714 * 188.95404 * 20 19 17 40 40 H 1.08996 * 109.11320 * 69.48235 * 20 19 17 41 41 H 1.08996 * 109.47357 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47037 * 300.02581 * 22 21 20 43 43 H 1.09000 * 109.47174 * 60.01767 * 22 21 20 44 44 H 1.09001 * 109.39821 * 257.44442 * 25 23 21 45 45 H 1.09003 * 109.33488 * 137.66626 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2286 2.0839 1.2682 5 6 3.6612 1.8478 1.7506 6 7 3.8713 2.5499 3.0190 7 6 5.0874 2.4835 3.6452 8 1 5.8914 1.9131 3.2041 9 6 5.2863 3.1483 4.8474 10 7 4.3062 3.8431 5.3853 11 14 6.9449 3.0571 5.7019 12 1 7.9934 3.6108 4.8080 13 1 6.8984 3.8473 6.9584 14 1 7.2613 1.6412 6.0184 15 6 2.2741 2.0055 -1.1667 16 8 2.7678 3.1134 -1.1663 17 6 1.9468 1.3271 -2.4719 18 1 1.0527 0.7151 -2.3532 19 6 1.7089 2.3837 -3.5575 20 6 1.2035 1.6835 -4.8197 21 7 2.0758 0.5694 -5.1694 22 6 2.0166 0.0550 -6.5399 23 6 2.9242 -0.0113 -4.3202 24 8 3.5715 -0.9587 -4.7132 25 6 3.1213 0.4453 -2.9032 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0652 3.1517 1.1234 32 1 1.5277 1.7068 2.0130 33 1 3.8246 0.7799 1.8954 34 1 4.3621 2.2248 1.0058 35 1 3.1491 3.0619 3.4154 36 1 4.4451 4.3073 6.2255 37 1 0.9634 3.1004 -3.2131 38 1 2.6434 2.9007 -3.7757 39 1 1.1824 2.3969 -5.6435 40 1 0.1955 1.3095 -4.6411 41 1 2.7198 -0.7706 -6.6489 42 1 1.0072 -0.2970 -6.7526 43 1 2.2786 0.8501 -7.2380 44 1 4.0475 1.0155 -2.8320 45 1 3.1805 -0.4244 -2.2487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668472723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:59 Heat of formation + Delta-G solvation = -56.971998 kcal Electronic energy + Delta-G solvation = -24778.267758 eV Core-core repulsion = 21217.166527 eV Total energy + Delta-G solvation = -3561.101231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12722 -39.73953 -36.78884 -36.17701 -34.81899 -34.14347 -31.73634 -30.35875 -30.12946 -28.27813 -27.15462 -25.04293 -24.02763 -23.59019 -22.60869 -21.33708 -19.09751 -18.95806 -17.42135 -17.13259 -16.89254 -16.79967 -16.20293 -15.71938 -15.10288 -14.64688 -14.54410 -14.18690 -13.99311 -13.94792 -13.65419 -13.47030 -13.16387 -13.02786 -12.91338 -12.71227 -12.53235 -12.20746 -12.11340 -11.87923 -11.44546 -11.29508 -11.26548 -11.13874 -10.96400 -10.87767 -10.65221 -10.31711 -10.12750 -9.74748 -9.51594 -9.09948 -8.85103 -8.56918 -6.91707 -5.74573 -3.03731 2.32048 2.55762 2.69698 2.95777 3.46628 3.50552 3.52060 4.07859 4.23498 4.27532 4.42843 4.62744 4.67043 4.79134 4.87968 4.88655 5.03773 5.05438 5.10209 5.16477 5.24621 5.29710 5.44319 5.51700 5.53463 5.54041 5.60699 5.64596 5.66636 5.80341 5.83312 5.99845 6.00925 6.04896 6.13770 6.55141 6.74502 6.91800 7.06672 7.45570 7.71722 7.83052 8.20981 8.44122 9.54904 10.11003 10.45974 11.48336 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003045 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.776104 B = 9192.273936 C = 9526.783956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.517 3.483 16 O -0.526 6.526 17 C -0.112 4.112 18 H 0.101 0.899 19 C -0.118 4.118 20 C 0.115 3.885 21 N -0.609 5.609 22 C 0.069 3.931 23 C 0.523 3.477 24 O -0.552 6.552 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -8.008 -21.997 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.338 5.338 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.213 1.213 15 C 0.304 3.696 16 O -0.402 6.402 17 C -0.134 4.134 18 H 0.119 0.881 19 C -0.156 4.156 20 C -0.008 4.008 21 N -0.342 5.342 22 C -0.074 4.074 23 C 0.312 3.688 24 O -0.431 6.431 25 C -0.165 4.165 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.951 -7.927 -22.122 26.364 hybrid contribution 0.533 0.158 0.755 0.937 sum -11.418 -7.770 -21.367 25.442 Atomic orbital electron populations 1.22237 0.95829 1.02318 1.02637 1.21680 0.94466 0.82660 1.03681 1.47961 1.65335 1.14163 1.06299 1.21707 0.98449 0.98010 0.83210 1.20904 0.92989 0.95422 0.89257 1.42200 1.13613 1.60172 1.21524 1.19165 0.89934 1.25757 1.02069 0.91256 1.24744 0.97838 1.00282 0.98108 1.69650 1.31292 1.36976 1.20399 0.86238 0.83576 0.77369 0.78841 1.21220 1.21646 1.21252 1.20318 0.78350 0.86081 0.84871 1.90757 1.42284 1.20030 1.87095 1.21505 1.00001 0.98064 0.93804 0.88137 1.21759 1.04163 0.97185 0.92542 1.21457 0.93284 0.88041 0.98015 1.47221 1.40423 1.34411 1.12163 1.21781 1.02872 1.00938 0.81790 1.19995 0.78762 0.82387 0.87669 1.90716 1.46656 1.28253 1.77428 1.21667 1.00055 1.01539 0.93213 0.91796 0.92605 0.91436 0.89519 0.90481 0.89820 0.90474 0.96483 0.95849 0.78298 0.93443 0.88960 0.89593 0.90022 0.91363 0.88986 0.92160 0.92133 0.87162 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.07 37.16 0.37 -0.95 16 2 C 0.10 0.93 5.71 -4.04 -0.02 0.91 16 3 N -0.60 -7.93 2.47 -173.69 -0.43 -8.36 16 4 C 0.11 1.81 5.49 -4.05 -0.02 1.79 16 5 C 0.14 3.01 6.58 -4.05 -0.03 2.98 16 6 N -0.73 -19.12 5.60 -59.91 -0.34 -19.45 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 11 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 C 0.52 6.99 6.75 -10.99 -0.07 6.91 16 16 O -0.53 -9.41 15.91 5.55 0.09 -9.32 16 17 C -0.11 -1.04 1.73 -91.56 -0.16 -1.20 16 18 H 0.10 0.74 5.84 -51.93 -0.30 0.43 16 19 C -0.12 -0.96 4.74 -26.59 -0.13 -1.08 16 20 C 0.11 0.69 6.40 -4.48 -0.03 0.66 16 21 N -0.61 -5.15 3.21 -182.86 -0.59 -5.74 16 22 C 0.07 0.48 10.48 59.85 0.63 1.11 16 23 C 0.52 5.81 7.47 -11.87 -0.09 5.72 16 24 O -0.55 -8.10 15.95 5.56 0.09 -8.01 16 25 C -0.12 -1.26 5.18 -28.10 -0.15 -1.40 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.40 7.03 -51.93 -0.37 0.03 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.08 0.61 5.08 -51.93 -0.26 0.34 16 31 H 0.08 1.55 7.50 -51.93 -0.39 1.16 16 32 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.38 10.39 7.67 -40.82 -0.31 10.07 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 39 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.82 6.59 -51.93 -0.34 0.48 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 45 H 0.11 1.01 6.55 -51.93 -0.34 0.67 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -36.11 361.14 -7.32 -43.43 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.35 Total: 4.24 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 0.06 Total: 7.91 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.63 Total: -61.53 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.18 Total: -17.34 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.11 -7.32 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668472723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.545 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds