Wall clock time and date at job start Tue Mar 31 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46963 * 2 1 4 4 C 1.46499 * 120.00190 * 88.37660 * 3 2 1 5 5 C 1.52994 * 109.47068 * 89.99679 * 4 3 2 6 6 N 1.46499 * 109.47368 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00491 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99809 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00281 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00184 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47366 * 59.99746 * 11 9 7 13 13 H 1.48503 * 109.46890 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46848 * 299.99375 * 11 9 7 15 15 C 1.34770 * 120.00000 * 268.37391 * 3 2 1 16 16 O 1.21286 * 120.00510 * 185.25011 * 15 3 2 17 17 C 1.50701 * 120.00100 * 5.25386 * 15 3 2 18 18 H 1.08997 * 109.67117 * 33.70887 * 17 15 3 19 19 C 1.53346 * 109.67504 * 154.20687 * 17 15 3 20 20 C 1.52932 * 108.66847 * 187.24112 * 19 17 15 21 21 N 1.45751 * 110.50216 * 309.27678 * 20 19 17 22 22 C 1.46504 * 117.94532 * 199.06508 * 21 20 19 23 23 C 1.33348 * 124.11376 * 19.08212 * 21 20 19 24 24 O 1.21278 * 118.25284 * 177.77734 * 23 21 20 25 25 C 1.50178 * 123.50433 * 357.76248 * 23 21 20 26 26 H 1.08999 * 109.47390 * 300.00030 * 1 2 3 27 27 H 1.09000 * 109.47004 * 60.00103 * 1 2 3 28 28 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47004 * 119.99897 * 2 1 3 30 30 H 1.08999 * 109.47390 * 239.99970 * 2 1 3 31 31 H 1.08992 * 109.47352 * 210.00176 * 4 3 2 32 32 H 1.09001 * 109.46693 * 330.00136 * 4 3 2 33 33 H 1.09001 * 109.47668 * 300.00408 * 5 4 3 34 34 H 1.09000 * 109.47413 * 60.00317 * 5 4 3 35 35 H 0.97003 * 119.99829 * 0.02562 * 6 5 4 36 36 H 0.96994 * 120.00245 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.60423 * 307.02244 * 19 17 15 38 38 H 1.09005 * 109.60249 * 67.50915 * 19 17 15 39 39 H 1.08994 * 109.29714 * 188.95404 * 20 19 17 40 40 H 1.08996 * 109.11320 * 69.48235 * 20 19 17 41 41 H 1.08996 * 109.47357 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47037 * 300.02581 * 22 21 20 43 43 H 1.09000 * 109.47174 * 60.01767 * 22 21 20 44 44 H 1.09001 * 109.39821 * 257.44442 * 25 23 21 45 45 H 1.09003 * 109.33488 * 137.66626 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2286 2.0839 1.2682 5 6 3.6612 1.8478 1.7506 6 7 3.8713 2.5499 3.0190 7 6 5.0874 2.4835 3.6452 8 1 5.8914 1.9131 3.2041 9 6 5.2863 3.1483 4.8474 10 7 4.3062 3.8431 5.3853 11 14 6.9449 3.0571 5.7019 12 1 7.9934 3.6108 4.8080 13 1 6.8984 3.8473 6.9584 14 1 7.2613 1.6412 6.0184 15 6 2.2741 2.0055 -1.1667 16 8 2.7678 3.1134 -1.1663 17 6 1.9468 1.3271 -2.4719 18 1 1.0527 0.7151 -2.3532 19 6 1.7089 2.3837 -3.5575 20 6 1.2035 1.6835 -4.8197 21 7 2.0758 0.5694 -5.1694 22 6 2.0166 0.0550 -6.5399 23 6 2.9242 -0.0113 -4.3202 24 8 3.5715 -0.9587 -4.7132 25 6 3.1213 0.4453 -2.9032 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0652 3.1517 1.1234 32 1 1.5277 1.7068 2.0130 33 1 3.8246 0.7799 1.8954 34 1 4.3621 2.2248 1.0058 35 1 3.1491 3.0619 3.4154 36 1 4.4451 4.3073 6.2255 37 1 0.9634 3.1004 -3.2131 38 1 2.6434 2.9007 -3.7757 39 1 1.1824 2.3969 -5.6435 40 1 0.1955 1.3095 -4.6411 41 1 2.7198 -0.7706 -6.6489 42 1 1.0072 -0.2970 -6.7526 43 1 2.2786 0.8501 -7.2380 44 1 4.0475 1.0155 -2.8320 45 1 3.1805 -0.4244 -2.2487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668472723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:59 Heat of formation + Delta-G solvation = -82.473574 kcal Electronic energy + Delta-G solvation = -24779.373590 eV Core-core repulsion = 21217.166527 eV Total energy + Delta-G solvation = -3562.207062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99629 -40.75522 -37.79686 -37.27772 -36.42803 -35.15094 -33.52034 -31.56406 -30.87683 -29.55462 -28.16736 -26.05632 -25.47315 -24.38385 -23.90324 -22.76950 -20.16615 -19.73964 -19.18570 -18.32438 -17.66719 -17.65630 -17.20578 -16.78609 -16.42599 -16.10318 -15.48245 -15.39195 -15.25992 -15.08467 -14.88149 -14.64167 -14.53784 -14.26712 -13.60609 -13.58842 -13.25786 -13.08330 -12.95743 -12.89513 -12.80582 -12.71368 -12.59180 -12.33564 -12.18351 -12.12047 -11.95287 -11.88917 -11.84395 -11.31266 -10.98628 -10.57886 -9.75550 -9.74412 -9.07908 -7.99294 -5.29971 1.43958 1.45335 1.48921 1.54372 1.55318 1.89104 2.01224 2.54462 3.23255 3.33830 3.53723 3.58177 3.64262 3.92042 4.00497 4.11654 4.16783 4.19541 4.21197 4.33675 4.43101 4.46827 4.51007 4.55809 4.60077 4.66568 4.72819 4.75842 4.89531 4.92593 4.99134 5.00776 5.07269 5.09478 5.18473 5.38853 5.40143 5.41875 5.55418 6.22398 6.34666 6.39415 7.04060 7.12521 7.28569 8.00343 8.25827 9.23821 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003045 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.776104 B = 9192.273936 C = 9526.783956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 N -0.602 5.602 4 C 0.124 3.876 5 C 0.148 3.852 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.071 0.929 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.977 3.023 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.513 3.487 16 O -0.577 6.577 17 C -0.097 4.097 18 H 0.131 0.869 19 C -0.118 4.118 20 C 0.117 3.883 21 N -0.604 5.604 22 C 0.066 3.934 23 C 0.521 3.479 24 O -0.596 6.596 25 C -0.121 4.121 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.027 0.973 34 H -0.001 1.001 35 H 0.376 0.624 36 H 0.254 0.746 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -9.186 -23.298 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 N -0.334 5.334 4 C 0.001 3.999 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.805 3.195 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.200 1.200 15 C 0.302 3.698 16 O -0.456 6.456 17 C -0.119 4.119 18 H 0.149 0.851 19 C -0.156 4.156 20 C -0.004 4.004 21 N -0.336 5.336 22 C -0.076 4.076 23 C 0.310 3.690 24 O -0.478 6.478 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.045 0.955 34 H 0.017 0.983 35 H 0.208 0.792 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.470 -9.136 -23.471 28.562 hybrid contribution 0.972 0.530 1.095 1.557 sum -12.498 -8.606 -22.376 27.036 Atomic orbital electron populations 1.22199 0.93872 1.03766 1.02621 1.21980 0.96045 0.80344 1.04639 1.48059 1.64977 1.15468 1.04912 1.21303 0.95858 0.97446 0.85340 1.20955 0.95347 0.94937 0.86694 1.42377 1.12732 1.60552 1.22927 1.19542 0.90959 1.25497 1.02434 0.91088 1.25608 1.01590 1.00272 0.98955 1.69803 1.33287 1.37934 1.20696 0.85173 0.79141 0.77767 0.77434 1.20699 1.21624 1.19985 1.21090 0.77043 0.85531 0.86107 1.90736 1.44511 1.22480 1.87868 1.21489 1.00624 0.98266 0.91487 0.85108 1.21764 1.03563 0.97063 0.93218 1.21651 0.93648 0.87611 0.97527 1.47362 1.39570 1.34278 1.12358 1.21913 1.03752 1.00835 0.81139 1.20032 0.78896 0.82054 0.88020 1.90700 1.48593 1.30323 1.78167 1.21595 0.99599 1.01609 0.93331 0.92990 0.91492 0.89210 0.89779 0.88418 0.92009 0.88814 0.95510 0.98282 0.79199 0.93723 0.88199 0.91734 0.87722 0.88468 0.91363 0.89656 0.90370 0.88982 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.07 71.98 0.73 -1.32 16 2 C 0.09 1.54 5.71 86.38 0.49 2.03 16 3 N -0.60 -15.37 2.47 -821.83 -2.03 -17.40 16 4 C 0.12 4.18 5.49 86.38 0.47 4.66 16 5 C 0.15 6.38 6.58 86.38 0.57 6.95 16 6 N -0.74 -39.74 5.60 -343.46 -1.92 -41.66 16 7 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 11 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.51 13.70 6.75 87.66 0.59 14.29 16 16 O -0.58 -21.29 15.91 -3.05 -0.05 -21.33 16 17 C -0.10 -1.64 1.73 -11.40 -0.02 -1.66 16 18 H 0.13 1.43 5.84 -2.39 -0.01 1.42 16 19 C -0.12 -1.68 4.74 30.69 0.15 -1.54 16 20 C 0.12 0.99 6.40 86.50 0.55 1.54 16 21 N -0.60 -8.76 3.21 -851.62 -2.73 -11.50 16 22 C 0.07 0.75 10.48 127.77 1.34 2.09 16 23 C 0.52 11.04 7.47 87.72 0.66 11.69 16 24 O -0.60 -17.46 15.95 -3.02 -0.05 -17.51 16 25 C -0.12 -2.36 5.18 29.71 0.15 -2.20 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.69 7.03 -2.39 -0.02 0.67 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 1.49 8.08 -2.39 -0.02 1.48 16 30 H 0.10 1.26 5.08 -2.39 -0.01 1.25 16 31 H 0.06 2.36 7.50 -2.39 -0.02 2.35 16 32 H 0.09 2.84 8.07 -2.39 -0.02 2.82 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.38 20.94 7.67 -92.71 -0.71 20.23 16 36 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.22 8.09 -2.38 -0.02 1.20 16 39 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 1.16 6.59 -2.39 -0.02 1.14 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 45 H 0.11 2.02 6.55 -2.39 -0.02 2.01 16 Total: -1.00 -80.74 361.14 2.78 -77.96 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.27 Total: 23.32 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.99 Total: 18.81 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -6.41 Total: -130.49 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.10 Total: -38.85 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.74 2.78 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668472723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.515 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds