Wall clock time and date at job start Tue Mar 31 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47354 * 2 1 4 4 C 1.53004 * 109.46979 * 240.00332 * 2 1 3 5 5 N 1.46495 * 109.47422 * 185.00163 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00123 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00137 * 179.97438 * 6 5 4 9 9 H 1.08995 * 108.57337 * 297.93904 * 8 6 5 10 10 C 1.51778 * 108.61443 * 55.74425 * 8 6 5 11 11 C 1.52948 * 110.88355 * 188.10903 * 10 8 6 12 12 N 1.47187 * 108.68964 * 273.54382 * 11 10 8 13 13 C 1.33371 * 120.43103 * 71.95338 * 12 11 10 14 14 O 1.21286 * 119.89292 * 179.70585 * 13 12 11 15 15 C 1.51424 * 120.21362 * 359.71799 * 13 12 11 16 16 C 1.51793 * 108.61670 * 179.97438 * 8 6 5 17 17 N 1.46498 * 109.47585 * 120.00323 * 2 1 3 18 18 C 1.46503 * 119.99961 * 59.99301 * 17 2 1 19 19 C 1.36937 * 120.00236 * 240.00022 * 17 2 1 20 20 H 1.08003 * 119.99697 * 336.23822 * 19 17 2 21 21 C 1.38808 * 120.00191 * 156.23549 * 19 17 2 22 22 N 1.31615 * 119.99999 * 330.08753 * 21 19 17 23 23 Si 1.86795 * 119.99993 * 150.36332 * 21 19 17 24 24 H 1.48499 * 109.47553 * 269.72654 * 23 21 19 25 25 H 1.48497 * 109.47317 * 29.72710 * 23 21 19 26 26 H 1.48505 * 109.47208 * 149.72119 * 23 21 19 27 27 H 1.09001 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46945 * 299.99429 * 1 2 3 29 29 H 1.08998 * 109.47559 * 59.99342 * 1 2 3 30 30 H 1.09011 * 109.46769 * 305.00086 * 4 2 1 31 31 H 1.08995 * 109.47245 * 64.99282 * 4 2 1 32 32 H 0.96999 * 120.00124 * 359.97438 * 5 4 2 33 33 H 1.09001 * 109.19255 * 308.47134 * 10 8 6 34 34 H 1.08999 * 109.20249 * 67.75230 * 10 8 6 35 35 H 1.08999 * 109.58902 * 153.78714 * 11 10 8 36 36 H 1.08993 * 109.72956 * 33.38943 * 11 10 8 37 37 H 0.97000 * 119.78576 * 251.97882 * 12 11 10 38 38 H 1.09002 * 109.63457 * 169.08119 * 15 13 12 39 39 H 1.08997 * 109.63013 * 48.48504 * 15 13 12 40 40 H 1.09000 * 109.22561 * 292.39855 * 16 8 6 41 41 H 1.09004 * 109.21939 * 51.74454 * 16 8 6 42 42 H 1.08993 * 109.47855 * 272.97821 * 18 17 2 43 43 H 1.09007 * 109.46930 * 32.97548 * 18 17 2 44 44 H 1.09003 * 109.47193 * 152.97090 * 18 17 2 45 45 H 0.97004 * 120.00461 * 354.91234 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1909 7 8 3.5696 -1.8849 -3.1393 8 6 5.6748 -1.5369 -2.1309 9 1 6.0949 -0.5312 -2.1233 10 6 6.0595 -2.2294 -0.8362 11 6 7.5738 -2.1888 -0.6253 12 7 8.1774 -3.3391 -1.3173 13 6 8.2415 -3.3686 -2.6491 14 8 8.7458 -4.3189 -3.2091 15 6 7.6869 -2.2194 -3.4644 16 6 6.1592 -2.2556 -3.3770 17 7 2.0184 -0.6906 1.1961 18 6 1.6644 -2.0932 1.4279 19 6 2.8057 -0.0252 2.0975 20 1 3.3785 0.8346 1.7827 21 6 2.8676 -0.4557 3.4157 22 7 1.8296 -1.0520 3.9626 23 14 4.4214 -0.1819 4.4157 24 1 5.3238 -1.3506 4.2584 25 1 5.1097 1.0431 3.9353 26 1 4.0659 -0.0202 5.8484 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6052 -1.7198 -1.2952 31 1 1.7515 -0.1583 -2.1370 32 1 3.9824 -0.4623 -0.4321 33 1 5.5678 -1.7287 -0.0022 34 1 5.7307 -3.2680 -0.8738 35 1 7.7960 -2.2453 0.4403 36 1 7.9776 -1.2628 -1.0344 37 1 8.5306 -4.0807 -0.8014 38 1 7.9971 -2.3246 -4.5040 39 1 8.0547 -1.2749 -3.0633 40 1 5.8256 -3.2928 -3.3457 41 1 5.7382 -1.7704 -4.2576 42 1 0.7108 -2.1454 1.9532 43 1 1.5811 -2.6098 0.4716 44 1 2.4381 -2.5683 2.0313 45 1 0.9970 -1.1250 3.4702 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674970225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:58 Heat of formation + Delta-G solvation = -69.140894 kcal Electronic energy + Delta-G solvation = -25470.637701 eV Core-core repulsion = 21909.008787 eV Total energy + Delta-G solvation = -3561.628914 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61141 -39.34296 -37.13013 -36.41368 -34.09773 -33.88318 -32.28466 -31.14436 -29.31614 -27.52550 -26.26068 -25.64165 -24.06204 -22.86972 -21.70271 -19.97651 -19.77958 -19.32286 -17.66662 -17.47551 -17.21648 -16.38552 -15.77371 -15.44469 -14.96529 -14.66129 -14.20424 -14.01364 -13.81984 -13.71626 -13.68717 -13.34260 -12.88172 -12.79275 -12.43695 -12.25429 -12.14393 -11.88516 -11.65107 -11.58880 -11.29944 -11.02231 -10.87679 -10.84206 -10.78719 -10.63463 -10.28989 -10.14295 -9.88663 -9.63497 -9.56543 -9.21030 -8.63495 -8.45343 -7.07473 -6.19877 -3.33174 2.53979 2.86826 3.17012 3.38910 3.40135 3.50895 3.57268 4.33322 4.46185 4.50998 4.57785 4.64454 5.00062 5.09635 5.12319 5.18750 5.23298 5.27494 5.33945 5.39415 5.45592 5.58755 5.76540 5.78957 5.86530 5.95361 6.02253 6.08010 6.11667 6.16283 6.26475 6.47708 6.62170 6.64814 6.72667 6.80360 6.92989 7.03870 7.10781 7.84045 7.92275 8.11077 8.44035 8.53972 8.99358 9.72919 10.13596 11.08359 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.004896 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.437057 B = 5717.200430 C = 7192.922551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.070 0.930 4 C 0.107 3.893 5 N -0.705 5.705 6 C 0.509 3.491 7 O -0.556 6.556 8 C -0.106 4.106 9 H 0.097 0.903 10 C -0.140 4.140 11 C 0.110 3.890 12 N -0.724 5.724 13 C 0.518 3.482 14 O -0.558 6.558 15 C -0.138 4.138 16 C -0.093 4.093 17 N -0.595 5.595 18 C 0.137 3.863 19 C -0.367 4.367 20 H 0.059 0.941 21 C -0.017 4.017 22 N -0.907 5.907 23 Si 1.060 2.940 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.291 1.291 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.008 0.992 43 H 0.015 0.985 44 H 0.049 0.951 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 1.729 -9.217 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.088 0.912 4 C -0.019 4.019 5 N -0.356 5.356 6 C 0.294 3.706 7 O -0.435 6.435 8 C -0.127 4.127 9 H 0.115 0.885 10 C -0.178 4.178 11 C -0.014 4.014 12 N -0.376 5.376 13 C 0.305 3.695 14 O -0.436 6.436 15 C -0.178 4.178 16 C -0.131 4.131 17 N -0.319 5.319 18 C -0.008 4.008 19 C -0.495 4.495 20 H 0.077 0.923 21 C -0.221 4.221 22 N -0.545 5.545 23 Si 0.890 3.110 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.217 1.217 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.026 0.974 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.310 0.814 -8.785 12.826 hybrid contribution -0.659 0.289 -0.646 0.967 sum 8.651 1.103 -9.431 12.845 Atomic orbital electron populations 1.22205 0.97664 1.01247 1.00753 1.20642 0.92332 0.95648 0.86435 0.91213 1.21885 0.79870 1.01058 0.99041 1.45934 1.08215 1.58267 1.23145 1.20536 0.89613 0.77906 0.82498 1.90666 1.70346 1.48543 1.33939 1.21004 0.93261 1.01846 0.96604 0.88530 1.21890 0.96233 1.02850 0.96859 1.21800 0.92412 0.88958 0.98273 1.46005 1.61551 1.23178 1.06838 1.20633 0.77728 0.88370 0.82758 1.90744 1.45775 1.36203 1.70921 1.22017 0.97007 0.97479 1.01320 1.21024 0.92233 1.02280 0.97607 1.44039 1.58814 1.06836 1.22180 1.20885 0.98524 0.84901 0.96498 1.19933 1.22143 1.16025 0.91399 0.92270 1.25718 1.02797 0.99650 0.93910 1.70744 1.01578 1.44508 1.37712 0.83590 0.75530 0.75694 0.76169 1.22055 1.21800 1.21742 0.93298 0.92345 0.93720 0.92331 0.92489 0.75256 0.88715 0.90439 0.88668 0.90191 0.76395 0.88249 0.89119 0.90934 0.89539 0.97381 0.96624 0.93181 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.19 37.16 0.34 -2.34 16 2 C 0.16 2.86 2.88 -67.93 -0.20 2.66 16 3 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 4 C 0.11 1.78 4.91 -4.04 -0.02 1.76 16 5 N -0.70 -10.89 5.18 -60.29 -0.31 -11.20 16 6 C 0.51 7.66 7.14 -10.99 -0.08 7.58 16 7 O -0.56 -10.29 15.75 5.55 0.09 -10.20 16 8 C -0.11 -1.16 2.05 -93.01 -0.19 -1.35 16 9 H 0.10 0.83 7.87 -51.93 -0.41 0.43 16 10 C -0.14 -1.44 4.94 -27.38 -0.14 -1.58 16 11 C 0.11 0.86 6.45 -3.69 -0.02 0.84 16 12 N -0.72 -6.95 5.27 -59.93 -0.32 -7.26 16 13 C 0.52 6.26 7.06 -11.25 -0.08 6.18 16 14 O -0.56 -9.12 17.92 5.55 0.10 -9.02 16 15 C -0.14 -1.31 5.58 -27.49 -0.15 -1.46 16 16 C -0.09 -1.04 4.31 -27.31 -0.12 -1.15 16 17 N -0.59 -12.83 2.16 -173.48 -0.37 -13.20 16 18 C 0.14 3.00 8.06 59.85 0.48 3.49 16 19 C -0.37 -8.83 9.12 -15.06 -0.14 -8.97 16 20 H 0.06 1.41 7.95 -52.48 -0.42 0.99 16 21 C -0.02 -0.43 4.60 -17.43 -0.08 -0.51 16 22 N -0.91 -25.36 12.75 55.49 0.71 -24.65 16 23 Si 1.06 22.76 30.01 -169.99 -5.10 17.66 16 24 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 28 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.06 6.90 -51.92 -0.36 0.70 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.41 6.31 6.88 -40.82 -0.28 6.02 16 33 H 0.09 1.07 6.96 -51.93 -0.36 0.71 16 34 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.50 6.72 -51.93 -0.35 0.15 16 37 H 0.40 3.55 8.91 -40.82 -0.36 3.19 16 38 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 39 H 0.09 0.64 6.77 -51.93 -0.35 0.29 16 40 H 0.07 0.96 7.86 -51.93 -0.41 0.56 16 41 H 0.09 0.99 7.75 -51.93 -0.40 0.59 16 42 H 0.01 0.19 6.87 -51.93 -0.36 -0.17 16 43 H 0.02 0.31 6.54 -51.93 -0.34 -0.03 16 44 H 0.05 1.19 7.28 -51.93 -0.38 0.81 16 45 H 0.27 7.71 6.39 -40.82 -0.26 7.45 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.69 352.61 -7.45 -39.15 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.17 Total: 8.27 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.39 Total: 5.15 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.30 Total: -56.32 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.19 Total: -19.22 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.10 Total: 17.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.69 -7.45 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674970225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.993 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds