Wall clock time and date at job start Tue Mar 31 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47354 * 2 1 4 4 C 1.53004 * 109.46979 * 240.00332 * 2 1 3 5 5 N 1.46495 * 109.47422 * 185.00163 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00123 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00137 * 179.97438 * 6 5 4 9 9 H 1.08995 * 108.57337 * 297.93904 * 8 6 5 10 10 C 1.51778 * 108.61443 * 55.74425 * 8 6 5 11 11 C 1.52948 * 110.88355 * 188.10903 * 10 8 6 12 12 N 1.47187 * 108.68964 * 273.54382 * 11 10 8 13 13 C 1.33371 * 120.43103 * 71.95338 * 12 11 10 14 14 O 1.21286 * 119.89292 * 179.70585 * 13 12 11 15 15 C 1.51424 * 120.21362 * 359.71799 * 13 12 11 16 16 C 1.51793 * 108.61670 * 179.97438 * 8 6 5 17 17 N 1.46498 * 109.47585 * 120.00323 * 2 1 3 18 18 C 1.46503 * 119.99961 * 59.99301 * 17 2 1 19 19 C 1.36937 * 120.00236 * 240.00022 * 17 2 1 20 20 H 1.08003 * 119.99697 * 336.23822 * 19 17 2 21 21 C 1.38808 * 120.00191 * 156.23549 * 19 17 2 22 22 N 1.31615 * 119.99999 * 330.08753 * 21 19 17 23 23 Si 1.86795 * 119.99993 * 150.36332 * 21 19 17 24 24 H 1.48499 * 109.47553 * 269.72654 * 23 21 19 25 25 H 1.48497 * 109.47317 * 29.72710 * 23 21 19 26 26 H 1.48505 * 109.47208 * 149.72119 * 23 21 19 27 27 H 1.09001 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46945 * 299.99429 * 1 2 3 29 29 H 1.08998 * 109.47559 * 59.99342 * 1 2 3 30 30 H 1.09011 * 109.46769 * 305.00086 * 4 2 1 31 31 H 1.08995 * 109.47245 * 64.99282 * 4 2 1 32 32 H 0.96999 * 120.00124 * 359.97438 * 5 4 2 33 33 H 1.09001 * 109.19255 * 308.47134 * 10 8 6 34 34 H 1.08999 * 109.20249 * 67.75230 * 10 8 6 35 35 H 1.08999 * 109.58902 * 153.78714 * 11 10 8 36 36 H 1.08993 * 109.72956 * 33.38943 * 11 10 8 37 37 H 0.97000 * 119.78576 * 251.97882 * 12 11 10 38 38 H 1.09002 * 109.63457 * 169.08119 * 15 13 12 39 39 H 1.08997 * 109.63013 * 48.48504 * 15 13 12 40 40 H 1.09000 * 109.22561 * 292.39855 * 16 8 6 41 41 H 1.09004 * 109.21939 * 51.74454 * 16 8 6 42 42 H 1.08993 * 109.47855 * 272.97821 * 18 17 2 43 43 H 1.09007 * 109.46930 * 32.97548 * 18 17 2 44 44 H 1.09003 * 109.47193 * 152.97090 * 18 17 2 45 45 H 0.97004 * 120.00461 * 354.91234 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1909 7 8 3.5696 -1.8849 -3.1393 8 6 5.6748 -1.5369 -2.1309 9 1 6.0949 -0.5312 -2.1233 10 6 6.0595 -2.2294 -0.8362 11 6 7.5738 -2.1888 -0.6253 12 7 8.1774 -3.3391 -1.3173 13 6 8.2415 -3.3686 -2.6491 14 8 8.7458 -4.3189 -3.2091 15 6 7.6869 -2.2194 -3.4644 16 6 6.1592 -2.2556 -3.3770 17 7 2.0184 -0.6906 1.1961 18 6 1.6644 -2.0932 1.4279 19 6 2.8057 -0.0252 2.0975 20 1 3.3785 0.8346 1.7827 21 6 2.8676 -0.4557 3.4157 22 7 1.8296 -1.0520 3.9626 23 14 4.4214 -0.1819 4.4157 24 1 5.3238 -1.3506 4.2584 25 1 5.1097 1.0431 3.9353 26 1 4.0659 -0.0202 5.8484 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6052 -1.7198 -1.2952 31 1 1.7515 -0.1583 -2.1370 32 1 3.9824 -0.4623 -0.4321 33 1 5.5678 -1.7287 -0.0022 34 1 5.7307 -3.2680 -0.8738 35 1 7.7960 -2.2453 0.4403 36 1 7.9776 -1.2628 -1.0344 37 1 8.5306 -4.0807 -0.8014 38 1 7.9971 -2.3246 -4.5040 39 1 8.0547 -1.2749 -3.0633 40 1 5.8256 -3.2928 -3.3457 41 1 5.7382 -1.7704 -4.2576 42 1 0.7108 -2.1454 1.9532 43 1 1.5811 -2.6098 0.4716 44 1 2.4381 -2.5683 2.0313 45 1 0.9970 -1.1250 3.4702 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674970225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:57 Heat of formation + Delta-G solvation = -91.722268 kcal Electronic energy + Delta-G solvation = -25471.616902 eV Core-core repulsion = 21909.008787 eV Total energy + Delta-G solvation = -3562.608116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59752 -40.48597 -38.66133 -37.46365 -35.60391 -34.79546 -33.80087 -32.12562 -31.00623 -28.46202 -28.11558 -26.84559 -24.98633 -24.60451 -22.70968 -21.22001 -20.86770 -20.46993 -19.39763 -18.55889 -18.12189 -17.39045 -17.05765 -16.91028 -16.12249 -15.79369 -15.73763 -15.38802 -15.15846 -14.97719 -14.68209 -14.43041 -14.36843 -13.81583 -13.65794 -13.54698 -13.21828 -13.16680 -12.92866 -12.75203 -12.65369 -12.46596 -12.42048 -12.33649 -11.90087 -11.84484 -11.78226 -11.65795 -11.38228 -10.85449 -10.80001 -10.36371 -10.12187 -9.92621 -8.94085 -8.16925 -5.27678 1.61848 1.67666 1.69248 1.73861 1.89497 2.33245 2.40796 2.74153 3.29942 3.49866 3.51805 3.61757 3.74429 3.81900 3.98707 4.20589 4.25380 4.32814 4.43463 4.46420 4.49342 4.53103 4.60294 4.65334 4.68344 4.76996 4.86637 4.87656 4.95710 5.02185 5.04017 5.14529 5.20979 5.22426 5.24636 5.33957 5.59798 5.87888 5.94356 6.29109 6.45824 6.69182 7.10211 7.24179 7.32810 7.85771 8.27541 9.10136 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.004896 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.437057 B = 5717.200430 C = 7192.922551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.704 5.704 6 C 0.506 3.494 7 O -0.594 6.594 8 C -0.097 4.097 9 H 0.135 0.865 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.716 5.716 13 C 0.511 3.489 14 O -0.610 6.610 15 C -0.128 4.128 16 C -0.086 4.086 17 N -0.602 5.602 18 C 0.155 3.845 19 C -0.352 4.352 20 H 0.069 0.931 21 C -0.072 4.072 22 N -0.947 5.947 23 Si 1.107 2.893 24 H -0.282 1.282 25 H -0.263 1.263 26 H -0.311 1.311 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.413 0.587 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.041 0.959 41 H 0.084 0.916 42 H -0.012 1.012 43 H 0.032 0.968 44 H 0.026 0.974 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 3.737 -9.816 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.091 0.909 4 C -0.008 4.008 5 N -0.354 5.354 6 C 0.294 3.706 7 O -0.475 6.475 8 C -0.118 4.118 9 H 0.153 0.847 10 C -0.174 4.174 11 C -0.011 4.011 12 N -0.366 5.366 13 C 0.299 3.701 14 O -0.493 6.493 15 C -0.167 4.167 16 C -0.124 4.124 17 N -0.326 5.326 18 C 0.009 3.991 19 C -0.481 4.481 20 H 0.086 0.914 21 C -0.269 4.269 22 N -0.589 5.589 23 Si 0.933 3.067 24 H -0.208 1.208 25 H -0.187 1.187 26 H -0.239 1.239 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.006 0.994 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.257 2.864 -9.393 14.938 hybrid contribution -1.357 -0.312 -0.514 1.484 sum 9.900 2.552 -9.907 14.236 Atomic orbital electron populations 1.22108 0.96652 1.01094 1.01346 1.20766 0.93093 0.95558 0.85472 0.90861 1.21662 0.80750 0.99960 0.98474 1.45933 1.07688 1.58388 1.23421 1.21264 0.91313 0.76602 0.81457 1.90654 1.71549 1.49947 1.35365 1.21054 0.90060 1.03946 0.96696 0.84739 1.21844 0.98207 1.01165 0.96177 1.21987 0.90243 0.89343 0.99541 1.46061 1.60391 1.23787 1.06321 1.21125 0.77088 0.88338 0.83513 1.90721 1.48325 1.38202 1.72022 1.21989 0.95250 0.98033 1.01458 1.20917 0.93461 1.00379 0.97669 1.44178 1.59009 1.06775 1.22643 1.20604 0.96586 0.85401 0.96461 1.20221 1.21144 1.15377 0.91332 0.91351 1.26966 1.04397 0.99909 0.95663 1.70884 1.01860 1.47896 1.38217 0.82966 0.72903 0.77136 0.73695 1.20808 1.18721 1.23927 0.93876 0.94284 0.90509 0.94013 0.91147 0.74949 0.89225 0.92867 0.86690 0.87166 0.76139 0.87974 0.85436 0.93998 0.89764 0.99435 0.94960 0.95564 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.19 71.98 0.66 -4.30 16 2 C 0.16 5.48 2.88 44.99 0.13 5.61 16 3 H 0.07 2.52 7.87 -2.39 -0.02 2.50 16 4 C 0.12 3.72 4.91 86.38 0.42 4.14 16 5 N -0.70 -20.36 5.18 -463.06 -2.40 -22.76 16 6 C 0.51 14.36 7.14 87.66 0.63 14.99 16 7 O -0.59 -21.53 15.75 -3.05 -0.05 -21.58 16 8 C -0.10 -1.84 2.05 -12.34 -0.03 -1.87 16 9 H 0.13 1.62 7.87 -2.39 -0.02 1.61 16 10 C -0.14 -2.46 4.94 30.18 0.15 -2.31 16 11 C 0.11 1.33 6.45 86.23 0.56 1.89 16 12 N -0.72 -12.15 5.27 -462.69 -2.44 -14.59 16 13 C 0.51 11.57 7.06 88.11 0.62 12.19 16 14 O -0.61 -19.89 17.92 -3.05 -0.05 -19.95 16 15 C -0.13 -2.07 5.58 30.10 0.17 -1.90 16 16 C -0.09 -1.76 4.31 30.22 0.13 -1.63 16 17 N -0.60 -25.57 2.16 -702.77 -1.52 -27.09 16 18 C 0.16 6.88 8.06 127.77 1.03 7.91 16 19 C -0.35 -16.49 9.12 84.03 0.77 -15.72 16 20 H 0.07 3.07 7.95 -2.91 -0.02 3.05 16 21 C -0.07 -3.65 4.60 84.86 0.39 -3.26 16 22 N -0.95 -53.98 12.75 21.65 0.28 -53.70 16 23 Si 1.11 44.82 30.01 68.60 2.06 46.88 16 24 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 26 H -0.31 -13.62 7.11 99.48 0.71 -12.92 16 27 H 0.04 1.44 7.67 -2.39 -0.02 1.42 16 28 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.47 6.90 -2.38 -0.02 1.45 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.41 11.62 6.88 -92.71 -0.64 10.98 16 33 H 0.09 1.77 6.96 -2.39 -0.02 1.75 16 34 H 0.05 1.23 8.05 -2.39 -0.02 1.21 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.73 6.72 -2.39 -0.02 0.72 16 37 H 0.40 6.51 8.91 -92.71 -0.83 5.69 16 38 H 0.10 1.65 8.13 -2.39 -0.02 1.63 16 39 H 0.13 1.14 6.77 -2.39 -0.02 1.12 16 40 H 0.04 1.11 7.86 -2.39 -0.02 1.09 16 41 H 0.08 1.79 7.75 -2.38 -0.02 1.77 16 42 H -0.01 -0.60 6.87 -2.39 -0.02 -0.62 16 43 H 0.03 1.29 6.54 -2.38 -0.02 1.28 16 44 H 0.03 1.26 7.28 -2.39 -0.02 1.24 16 45 H 0.25 14.93 6.39 -92.70 -0.59 14.34 16 Total: -1.00 -71.16 352.61 1.22 -69.94 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.28 Total: 27.09 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.63 Total: 15.75 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -6.08 Total: -118.14 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.10 Total: -41.52 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.06 Total: 46.88 kcal Total: -71.16 1.22 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674970225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.780 kcal (2) G-P(sol) polarization free energy of solvation -71.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds