Wall clock time and date at job start Tue Mar 31 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00205 * 2 1 4 4 O 1.21287 * 119.99842 * 5.36273 * 3 2 1 5 5 C 1.50699 * 120.00156 * 185.36232 * 3 2 1 6 6 C 1.50698 * 112.85169 * 65.49301 * 5 3 2 7 7 O 1.21278 * 119.99911 * 234.47206 * 6 5 3 8 8 N 1.34777 * 119.99686 * 54.47581 * 6 5 3 9 9 C 1.46504 * 119.99836 * 184.88187 * 8 6 5 10 10 C 1.53000 * 109.47010 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47126 * 294.99844 * 10 9 8 12 12 C 1.52999 * 109.47031 * 175.00039 * 10 9 8 13 13 N 1.46500 * 109.46853 * 55.00170 * 10 9 8 14 14 C 1.46501 * 120.00136 * 60.00106 * 13 10 9 15 15 C 1.36936 * 119.99899 * 239.99450 * 13 10 9 16 16 H 1.08001 * 119.99724 * 339.17628 * 15 13 10 17 17 C 1.38810 * 119.99905 * 158.89973 * 15 13 10 18 18 N 1.31622 * 120.00264 * 343.36864 * 17 15 13 19 19 Si 1.86804 * 119.99930 * 163.36677 * 17 15 13 20 20 H 1.48495 * 109.46927 * 94.98010 * 19 17 15 21 21 H 1.48498 * 109.47291 * 214.98036 * 19 17 15 22 22 H 1.48499 * 109.47113 * 334.97848 * 19 17 15 23 23 C 1.53780 * 113.69004 * 196.76759 * 5 3 2 24 24 C 1.53779 * 87.08740 * 89.12287 * 23 5 3 25 25 C 1.53780 * 87.07846 * 25.43194 * 24 23 5 26 26 H 1.08999 * 109.47471 * 59.99332 * 1 2 3 27 27 H 1.09001 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47212 * 299.99864 * 1 2 3 29 29 H 0.97001 * 119.99820 * 180.02562 * 2 1 3 30 30 H 0.97000 * 120.00495 * 4.88008 * 8 6 5 31 31 H 1.09001 * 109.47064 * 59.99874 * 9 8 6 32 32 H 1.09001 * 109.47165 * 300.00063 * 9 8 6 33 33 H 1.09003 * 109.47071 * 59.99747 * 12 10 9 34 34 H 1.08989 * 109.47326 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46957 * 300.00641 * 12 10 9 36 36 H 1.08999 * 109.46671 * 264.50460 * 14 13 10 37 37 H 1.08997 * 109.47492 * 24.50710 * 14 13 10 38 38 H 1.08999 * 109.47128 * 144.50661 * 14 13 10 39 39 H 0.96996 * 120.00305 * 179.97438 * 18 17 15 40 40 H 1.09006 * 113.61365 * 203.67488 * 23 5 3 41 41 H 1.09004 * 113.61581 * 334.56982 * 23 5 3 42 42 H 1.08998 * 113.61215 * 270.88839 * 24 23 5 43 43 H 1.08997 * 113.69248 * 139.99088 * 24 23 5 44 44 H 1.09001 * 113.61526 * 220.02575 * 25 24 23 45 45 H 1.08998 * 113.69572 * 89.12773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5364 2.2152 0.0982 5 6 3.6409 1.1700 -0.1220 6 6 4.1209 0.6547 -1.4543 7 8 4.9194 -0.2569 -1.4999 8 7 3.6627 1.2071 -2.5951 9 6 4.0454 0.6380 -3.8897 10 6 3.3943 1.4457 -5.0143 11 1 2.3112 1.3362 -4.9601 12 6 3.8919 0.9304 -6.3663 13 7 3.7503 2.8593 -4.8694 14 6 5.1565 3.2684 -4.9083 15 6 2.7686 3.7985 -4.6978 16 1 1.7539 3.5797 -4.9963 17 6 3.0764 5.0294 -4.1349 18 7 4.2035 5.1873 -3.4736 19 14 1.8912 6.4619 -4.3160 20 1 1.0136 6.5323 -3.1202 21 1 2.6589 7.7267 -4.4417 22 1 1.0589 6.2653 -5.5300 23 6 4.2922 2.4990 0.2955 24 6 4.3561 1.9291 1.7224 25 6 4.3577 0.5320 1.0798 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8401 -0.0004 30 1 3.0795 1.9814 -2.5591 31 1 3.7095 -0.3975 -3.9450 32 1 5.1296 0.6744 -3.9964 33 1 3.6272 -0.1215 -6.4740 34 1 3.4278 1.5054 -7.1674 35 1 4.9751 1.0397 -6.4204 36 1 5.5411 3.3438 -3.8912 37 1 5.7350 2.5286 -5.4616 38 1 5.2396 4.2371 -5.4010 39 1 4.4187 6.0476 -3.0806 40 1 5.2719 2.6649 -0.1527 41 1 3.6300 3.3594 0.1982 42 1 3.4652 2.1359 2.3153 43 1 5.2799 2.1687 2.2488 44 1 3.7483 -0.1957 1.6156 45 1 5.3547 0.1587 0.8457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675031055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:21 Heat of formation + Delta-G solvation = -30.040603 kcal Electronic energy + Delta-G solvation = -26144.112467 eV Core-core repulsion = 22584.179069 eV Total energy + Delta-G solvation = -3559.933398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93780 -38.66595 -37.20521 -36.38388 -34.54709 -33.65721 -32.01312 -29.38386 -28.39219 -26.57248 -26.00694 -25.31845 -24.85012 -23.00339 -21.50405 -20.49982 -19.40610 -19.12159 -17.54057 -16.89930 -16.15843 -15.94177 -15.51591 -15.21376 -14.93444 -14.78521 -14.39416 -13.91291 -13.80430 -13.24320 -12.81892 -12.75915 -12.65381 -12.40812 -12.29538 -12.23272 -12.11866 -11.79152 -11.57702 -11.16155 -11.09504 -10.86348 -10.74847 -10.68226 -10.42863 -10.30623 -10.23759 -9.84555 -9.79876 -9.76678 -9.24536 -9.11235 -8.55236 -8.40355 -6.80413 -5.73555 -3.18109 2.60902 2.94337 3.23183 3.40222 3.47836 3.48209 3.72194 4.49776 4.58005 4.65996 4.76516 4.92922 5.11400 5.21183 5.38133 5.40185 5.47081 5.53214 5.60035 5.72023 5.75987 5.92360 5.95371 5.96563 6.06528 6.11863 6.14056 6.32007 6.33167 6.36897 6.43331 6.49352 6.68426 6.78447 6.88335 7.09128 7.36871 7.43708 7.72640 7.80804 8.13763 8.25491 8.36434 8.70914 9.21687 9.85388 10.33937 11.29897 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.006200 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.612502 B = 4514.748618 C = 5174.055871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.543 3.457 4 O -0.516 6.516 5 C -0.135 4.135 6 C 0.532 3.468 7 O -0.555 6.555 8 N -0.692 5.692 9 C 0.106 3.894 10 C 0.158 3.842 11 H 0.067 0.933 12 C -0.157 4.157 13 N -0.592 5.592 14 C 0.163 3.837 15 C -0.265 4.265 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.896 5.896 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.103 4.103 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.418 0.582 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.000 1.000 38 H 0.038 0.962 39 H 0.252 0.748 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -11.382 6.848 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.386 5.386 3 C 0.328 3.672 4 O -0.390 6.390 5 C -0.142 4.142 6 C 0.316 3.684 7 O -0.435 6.435 8 N -0.342 5.342 9 C -0.020 4.020 10 C 0.049 3.951 11 H 0.085 0.915 12 C -0.217 4.217 13 N -0.315 5.315 14 C 0.018 3.982 15 C -0.394 4.394 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.138 4.138 24 C -0.181 4.181 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.236 0.764 30 H 0.256 0.744 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.018 0.982 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.269 -11.066 6.902 13.238 hybrid contribution -0.643 0.824 -0.152 1.056 sum -2.912 -10.242 6.750 12.607 Atomic orbital electron populations 1.21541 0.79370 1.02078 1.02529 1.45701 1.07728 1.08643 1.76513 1.19611 0.88001 0.83754 0.75832 1.90751 1.69434 1.31246 1.47577 1.22302 0.93219 1.03007 0.95631 1.19693 0.81450 0.82502 0.84794 1.90634 1.34607 1.30806 1.87426 1.45897 1.50113 1.33220 1.04927 1.21993 1.00233 0.96026 0.83777 1.20637 0.97743 0.85456 0.91289 0.91504 1.22168 1.01486 0.99279 0.98754 1.43936 1.03329 0.99820 1.84400 1.20740 0.83127 0.95726 0.98602 1.19151 0.90584 0.94248 1.35426 0.91556 1.24900 0.97308 0.99015 0.97744 1.70086 1.24369 1.23512 1.35999 0.86357 0.80437 0.82591 0.77872 1.21384 1.21683 1.20660 1.22754 1.01516 0.94748 0.94818 1.22893 1.02493 0.95786 0.96889 1.22833 1.01589 0.96841 0.92830 0.91977 0.90755 0.92197 0.76425 0.74434 0.92990 0.92235 0.93643 0.92392 0.92944 0.95112 0.98174 0.94314 0.93769 0.88690 0.88782 0.90084 0.90634 0.91180 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 10.71 59.85 0.64 1.57 16 2 N -0.73 -9.19 5.71 -67.08 -0.38 -9.57 16 3 C 0.54 8.82 6.25 -10.99 -0.07 8.76 16 4 O -0.52 -10.25 15.96 5.55 0.09 -10.16 16 5 C -0.14 -2.17 1.05 -156.00 -0.16 -2.33 16 6 C 0.53 9.82 6.85 -10.99 -0.08 9.74 16 7 O -0.56 -11.11 15.96 5.56 0.09 -11.03 16 8 N -0.69 -13.55 5.28 -60.29 -0.32 -13.87 16 9 C 0.11 1.97 4.97 -4.04 -0.02 1.95 16 10 C 0.16 3.04 2.87 -67.93 -0.19 2.85 16 11 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 12 C -0.16 -2.60 9.18 37.16 0.34 -2.26 16 13 N -0.59 -13.84 2.29 -173.49 -0.40 -14.24 16 14 C 0.16 3.88 8.12 59.85 0.49 4.36 16 15 C -0.26 -6.90 9.32 -15.06 -0.14 -7.04 16 16 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 17 C 0.01 0.26 5.03 -17.43 -0.09 0.18 16 18 N -0.90 -24.95 10.81 55.49 0.60 -24.35 16 19 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.10 -1.66 7.09 -25.92 -0.18 -1.84 16 24 C -0.14 -1.86 7.81 -25.92 -0.20 -2.06 16 25 C -0.10 -1.35 6.95 -25.92 -0.18 -1.53 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.40 4.23 8.83 -40.82 -0.36 3.87 16 30 H 0.42 9.20 7.79 -40.82 -0.32 8.88 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.18 7.84 -51.93 -0.41 0.78 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.98 8.14 -51.94 -0.42 0.56 16 35 H 0.05 0.87 6.67 -51.93 -0.35 0.53 16 36 H 0.03 0.80 7.35 -51.93 -0.38 0.42 16 37 H 0.00 0.00 6.44 -51.93 -0.33 -0.34 16 38 H 0.04 1.00 7.33 -51.93 -0.38 0.62 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 41 H 0.09 1.78 7.35 -51.93 -0.38 1.39 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.10 1.40 7.51 -51.93 -0.39 1.01 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -30.75 365.53 -7.17 -37.92 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.48 Total: 10.76 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 0.15 Total: 12.35 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.50 Total: -62.03 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.18 Total: -21.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.75 -7.17 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675031055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.881 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds