Wall clock time and date at job start Tue Mar 31 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00205 * 2 1 4 4 O 1.21287 * 119.99842 * 5.36273 * 3 2 1 5 5 C 1.50699 * 120.00156 * 185.36232 * 3 2 1 6 6 C 1.50698 * 112.85169 * 65.49301 * 5 3 2 7 7 O 1.21278 * 119.99911 * 234.47206 * 6 5 3 8 8 N 1.34777 * 119.99686 * 54.47581 * 6 5 3 9 9 C 1.46504 * 119.99836 * 184.88187 * 8 6 5 10 10 C 1.53000 * 109.47010 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47126 * 294.99844 * 10 9 8 12 12 C 1.52999 * 109.47031 * 175.00039 * 10 9 8 13 13 N 1.46500 * 109.46853 * 55.00170 * 10 9 8 14 14 C 1.46501 * 120.00136 * 60.00106 * 13 10 9 15 15 C 1.36936 * 119.99899 * 239.99450 * 13 10 9 16 16 H 1.08001 * 119.99724 * 339.17628 * 15 13 10 17 17 C 1.38810 * 119.99905 * 158.89973 * 15 13 10 18 18 N 1.31622 * 120.00264 * 343.36864 * 17 15 13 19 19 Si 1.86804 * 119.99930 * 163.36677 * 17 15 13 20 20 H 1.48495 * 109.46927 * 94.98010 * 19 17 15 21 21 H 1.48498 * 109.47291 * 214.98036 * 19 17 15 22 22 H 1.48499 * 109.47113 * 334.97848 * 19 17 15 23 23 C 1.53780 * 113.69004 * 196.76759 * 5 3 2 24 24 C 1.53779 * 87.08740 * 89.12287 * 23 5 3 25 25 C 1.53780 * 87.07846 * 25.43194 * 24 23 5 26 26 H 1.08999 * 109.47471 * 59.99332 * 1 2 3 27 27 H 1.09001 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47212 * 299.99864 * 1 2 3 29 29 H 0.97001 * 119.99820 * 180.02562 * 2 1 3 30 30 H 0.97000 * 120.00495 * 4.88008 * 8 6 5 31 31 H 1.09001 * 109.47064 * 59.99874 * 9 8 6 32 32 H 1.09001 * 109.47165 * 300.00063 * 9 8 6 33 33 H 1.09003 * 109.47071 * 59.99747 * 12 10 9 34 34 H 1.08989 * 109.47326 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46957 * 300.00641 * 12 10 9 36 36 H 1.08999 * 109.46671 * 264.50460 * 14 13 10 37 37 H 1.08997 * 109.47492 * 24.50710 * 14 13 10 38 38 H 1.08999 * 109.47128 * 144.50661 * 14 13 10 39 39 H 0.96996 * 120.00305 * 179.97438 * 18 17 15 40 40 H 1.09006 * 113.61365 * 203.67488 * 23 5 3 41 41 H 1.09004 * 113.61581 * 334.56982 * 23 5 3 42 42 H 1.08998 * 113.61215 * 270.88839 * 24 23 5 43 43 H 1.08997 * 113.69248 * 139.99088 * 24 23 5 44 44 H 1.09001 * 113.61526 * 220.02575 * 25 24 23 45 45 H 1.08998 * 113.69572 * 89.12773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5364 2.2152 0.0982 5 6 3.6409 1.1700 -0.1220 6 6 4.1209 0.6547 -1.4543 7 8 4.9194 -0.2569 -1.4999 8 7 3.6627 1.2071 -2.5951 9 6 4.0454 0.6380 -3.8897 10 6 3.3943 1.4457 -5.0143 11 1 2.3112 1.3362 -4.9601 12 6 3.8919 0.9304 -6.3663 13 7 3.7503 2.8593 -4.8694 14 6 5.1565 3.2684 -4.9083 15 6 2.7686 3.7985 -4.6978 16 1 1.7539 3.5797 -4.9963 17 6 3.0764 5.0294 -4.1349 18 7 4.2035 5.1873 -3.4736 19 14 1.8912 6.4619 -4.3160 20 1 1.0136 6.5323 -3.1202 21 1 2.6589 7.7267 -4.4417 22 1 1.0589 6.2653 -5.5300 23 6 4.2922 2.4990 0.2955 24 6 4.3561 1.9291 1.7224 25 6 4.3577 0.5320 1.0798 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8401 -0.0004 30 1 3.0795 1.9814 -2.5591 31 1 3.7095 -0.3975 -3.9450 32 1 5.1296 0.6744 -3.9964 33 1 3.6272 -0.1215 -6.4740 34 1 3.4278 1.5054 -7.1674 35 1 4.9751 1.0397 -6.4204 36 1 5.5411 3.3438 -3.8912 37 1 5.7350 2.5286 -5.4616 38 1 5.2396 4.2371 -5.4010 39 1 4.4187 6.0476 -3.0806 40 1 5.2719 2.6649 -0.1527 41 1 3.6300 3.3594 0.1982 42 1 3.4652 2.1359 2.3153 43 1 5.2799 2.1687 2.2488 44 1 3.7483 -0.1957 1.6156 45 1 5.3547 0.1587 0.8457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675031055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:21 Heat of formation + Delta-G solvation = -51.664859 kcal Electronic energy + Delta-G solvation = -26145.050165 eV Core-core repulsion = 22584.179069 eV Total energy + Delta-G solvation = -3560.871096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24206 -40.10198 -38.66768 -37.88092 -35.71859 -35.37418 -33.77429 -31.18292 -29.59397 -28.00664 -27.75746 -26.50743 -26.15322 -24.87341 -22.71284 -21.86738 -21.04712 -20.34457 -18.99807 -18.80382 -17.43454 -17.18832 -17.03884 -16.96310 -16.31522 -16.05133 -15.84963 -15.49171 -15.31128 -14.65896 -14.58428 -14.31218 -13.92388 -13.83320 -13.63850 -13.53744 -13.28231 -13.16419 -12.99115 -12.83529 -12.60647 -12.50819 -12.42470 -12.31419 -12.12392 -12.00934 -11.74823 -11.50946 -11.45986 -11.08083 -10.70503 -10.59379 -10.21404 -9.95988 -8.77961 -7.79270 -5.23913 1.30409 1.44829 1.47832 1.52180 1.54544 2.10213 2.28778 2.52117 3.34257 3.36837 3.44624 3.61685 3.65508 3.75152 3.80052 4.04408 4.31891 4.38757 4.46281 4.59390 4.59933 4.62870 4.68566 4.76732 4.81099 4.83544 4.91663 4.93239 4.99346 5.01635 5.07944 5.26365 5.28602 5.32552 5.33882 5.44574 5.58752 5.68826 5.74147 6.33991 6.35983 6.56395 7.06792 7.16080 7.18366 7.90269 8.34000 9.21921 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.006200 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.612502 B = 4514.748618 C = 5174.055871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.717 5.717 3 C 0.543 3.457 4 O -0.561 6.561 5 C -0.138 4.138 6 C 0.532 3.468 7 O -0.569 6.569 8 N -0.700 5.700 9 C 0.112 3.888 10 C 0.154 3.846 11 H 0.067 0.933 12 C -0.147 4.147 13 N -0.600 5.600 14 C 0.181 3.819 15 C -0.261 4.261 16 H 0.068 0.932 17 C -0.039 4.039 18 N -0.920 5.920 19 Si 0.950 3.050 20 H -0.295 1.295 21 H -0.296 1.296 22 H -0.271 1.271 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.089 4.089 26 H 0.045 0.955 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.415 0.585 30 H 0.405 0.595 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.001 0.999 37 H 0.028 0.972 38 H 0.011 0.989 39 H 0.244 0.756 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -13.821 7.074 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 C 0.327 3.673 4 O -0.439 6.439 5 C -0.145 4.145 6 C 0.318 3.682 7 O -0.449 6.449 8 N -0.348 5.348 9 C -0.014 4.014 10 C 0.047 3.953 11 H 0.085 0.915 12 C -0.206 4.206 13 N -0.323 5.323 14 C 0.036 3.964 15 C -0.391 4.391 16 H 0.086 0.914 17 C -0.236 4.236 18 N -0.566 5.566 19 Si 0.780 3.220 20 H -0.222 1.222 21 H -0.223 1.223 22 H -0.196 1.196 23 C -0.150 4.150 24 C -0.163 4.163 25 C -0.127 4.127 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.077 0.923 29 H 0.251 0.749 30 H 0.241 0.759 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.046 0.954 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.975 -13.591 7.105 15.622 hybrid contribution -0.455 1.498 -0.267 1.588 sum -3.430 -12.092 6.838 14.309 Atomic orbital electron populations 1.21743 0.77849 1.04613 1.01659 1.45651 1.08720 1.08003 1.74500 1.19638 0.87946 0.84123 0.75555 1.90733 1.70114 1.32979 1.50033 1.22385 0.93709 1.03002 0.95367 1.20032 0.80921 0.82014 0.85252 1.90618 1.35125 1.31436 1.87745 1.46024 1.50096 1.32877 1.05816 1.21952 0.99290 0.97017 0.83145 1.20856 0.98010 0.83293 0.93127 0.91495 1.22045 1.01132 1.01141 0.96290 1.44054 1.02562 1.01430 1.84287 1.20410 0.83916 0.95210 0.96835 1.19382 0.91098 0.94754 1.33884 0.91442 1.25491 0.98681 1.01048 0.98372 1.70225 1.25821 1.23248 1.37316 0.85521 0.78758 0.80126 0.77590 1.22215 1.22270 1.19639 1.22718 1.00057 0.94179 0.98082 1.22831 1.03810 0.94982 0.94715 1.22821 1.01493 0.97316 0.91024 0.93621 0.86493 0.92344 0.74919 0.75943 0.90554 0.93535 0.90250 0.92882 0.93101 0.98102 0.95392 0.97028 0.94616 0.90124 0.92020 0.89657 0.88424 0.88323 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.71 127.77 1.37 2.97 16 2 N -0.72 -16.57 5.71 -484.53 -2.77 -19.34 16 3 C 0.54 17.36 6.25 87.66 0.55 17.91 16 4 O -0.56 -22.74 15.96 -3.05 -0.05 -22.79 16 5 C -0.14 -4.38 1.05 -53.15 -0.06 -4.44 16 6 C 0.53 19.43 6.85 87.66 0.60 20.03 16 7 O -0.57 -22.06 15.96 -3.02 -0.05 -22.11 16 8 N -0.70 -27.40 5.28 -463.05 -2.45 -29.85 16 9 C 0.11 4.02 4.97 86.38 0.43 4.45 16 10 C 0.15 5.76 2.87 44.99 0.13 5.89 16 11 H 0.07 2.50 7.85 -2.39 -0.02 2.48 16 12 C -0.15 -4.47 9.18 71.98 0.66 -3.81 16 13 N -0.60 -28.09 2.29 -702.79 -1.61 -29.69 16 14 C 0.18 8.77 8.12 127.77 1.04 9.81 16 15 C -0.26 -13.70 9.32 84.03 0.78 -12.92 16 16 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16 17 C -0.04 -2.16 5.03 84.86 0.43 -1.73 16 18 N -0.92 -53.11 10.81 21.65 0.23 -52.88 16 19 Si 0.95 45.54 29.59 68.60 2.03 47.57 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 C -0.11 -3.82 7.09 31.12 0.22 -3.60 16 24 C -0.13 -3.12 7.81 31.12 0.24 -2.88 16 25 C -0.09 -2.14 6.95 31.12 0.22 -1.92 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.41 7.51 8.83 -92.71 -0.82 6.69 16 30 H 0.41 18.23 7.79 -92.71 -0.72 17.51 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.56 6.67 -2.38 -0.02 1.55 16 36 H 0.00 0.04 7.35 -2.39 -0.02 0.02 16 37 H 0.03 1.17 6.44 -2.39 -0.02 1.15 16 38 H 0.01 0.59 7.33 -2.39 -0.02 0.57 16 39 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.08 2.92 8.09 -2.38 -0.02 2.90 16 41 H 0.06 2.49 7.35 -2.39 -0.02 2.47 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 45 H 0.10 2.55 7.51 -2.39 -0.02 2.53 16 Total: -1.00 -68.35 365.53 1.41 -66.94 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.55 Total: 32.40 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 6.61 Total: 29.75 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -6.58 Total: -131.75 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.10 Total: -44.90 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.35 1.41 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675031055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.275 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds