Wall clock time and date at job start Tue Mar 31 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 120.00096 * 2 1 4 4 O 1.21280 * 120.00113 * 4.56274 * 3 2 1 5 5 C 1.50698 * 119.99990 * 184.55748 * 3 2 1 6 6 C 1.50697 * 112.84780 * 65.43840 * 5 3 2 7 7 O 1.21285 * 119.99907 * 234.51516 * 6 5 3 8 8 N 1.34778 * 120.00321 * 54.51149 * 6 5 3 9 9 C 1.46498 * 120.00241 * 185.19215 * 8 6 5 10 10 C 1.53006 * 109.46989 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.46995 * 65.00096 * 10 9 8 12 12 C 1.53001 * 109.47103 * 185.00032 * 10 9 8 13 13 N 1.46502 * 109.46736 * 304.99892 * 10 9 8 14 14 C 1.46498 * 120.00002 * 299.99724 * 13 10 9 15 15 C 1.36938 * 119.99504 * 120.00666 * 13 10 9 16 16 H 1.08002 * 120.00549 * 27.72486 * 15 13 10 17 17 C 1.38812 * 119.99538 * 207.72881 * 15 13 10 18 18 N 1.31620 * 120.00157 * 40.18215 * 17 15 13 19 19 Si 1.86799 * 120.00067 * 220.46379 * 17 15 13 20 20 H 1.48495 * 109.47292 * 179.72467 * 19 17 15 21 21 H 1.48511 * 109.46719 * 299.72370 * 19 17 15 22 22 H 1.48496 * 109.47310 * 59.72141 * 19 17 15 23 23 C 1.53780 * 113.69114 * 196.70373 * 5 3 2 24 24 C 1.53783 * 87.08055 * 89.13206 * 23 5 3 25 25 C 1.53775 * 113.61837 * 294.24242 * 5 3 2 26 26 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47052 * 300.00584 * 1 2 3 28 28 H 1.08996 * 109.46657 * 59.99968 * 1 2 3 29 29 H 0.97006 * 119.99788 * 179.97438 * 2 1 3 30 30 H 0.97001 * 119.99803 * 5.19551 * 8 6 5 31 31 H 1.08994 * 109.47209 * 60.00252 * 9 8 6 32 32 H 1.08997 * 109.47276 * 299.99925 * 9 8 6 33 33 H 1.08994 * 109.47235 * 179.97438 * 12 10 9 34 34 H 1.09002 * 109.47163 * 300.00397 * 12 10 9 35 35 H 1.09007 * 109.47007 * 59.99736 * 12 10 9 36 36 H 1.08995 * 109.47484 * 271.62489 * 14 13 10 37 37 H 1.09000 * 109.47202 * 31.62687 * 14 13 10 38 38 H 1.09002 * 109.46563 * 151.62772 * 14 13 10 39 39 H 0.97000 * 119.99720 * 5.76390 * 18 17 15 40 40 H 1.09001 * 113.61445 * 203.67898 * 23 5 3 41 41 H 1.08995 * 113.61786 * 334.58005 * 23 5 3 42 42 H 1.08999 * 113.61026 * 270.88234 * 24 23 5 43 43 H 1.08994 * 113.61385 * 139.98233 * 24 23 5 44 44 H 1.09001 * 113.61510 * 25.34307 * 25 5 3 45 45 H 1.09001 * 113.61652 * 156.16578 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5355 2.2158 0.0836 5 6 3.6424 1.1692 -0.1037 6 6 4.1384 0.6434 -1.4260 7 8 4.9369 -0.2691 -1.4547 8 7 3.6947 1.1870 -2.5767 9 6 4.0875 0.6035 -3.8618 10 6 3.4530 1.4044 -5.0007 11 1 3.8616 2.4149 -5.0058 12 6 3.7602 0.7233 -6.3359 13 7 2.0023 1.4651 -4.8058 14 6 1.2168 0.2293 -4.7617 15 6 1.3806 2.6770 -4.6649 16 1 1.8080 3.5592 -5.1183 17 6 0.2010 2.7718 -3.9393 18 7 0.0580 2.0884 -2.8236 19 14 -1.1864 3.8630 -4.5505 20 1 -2.3300 3.7851 -3.6064 21 1 -0.7104 5.2671 -4.6367 22 1 -1.6217 3.4045 -5.8942 23 6 4.2885 2.5017 0.3108 24 6 4.3351 1.9431 1.7429 25 6 4.3446 0.5409 1.1116 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.9501 -0.8401 0.0004 30 1 3.1152 1.9646 -2.5540 31 1 3.7468 -0.4306 -3.9106 32 1 5.1728 0.6334 -3.9578 33 1 3.3078 1.2935 -7.1472 34 1 4.8395 0.6780 -6.4809 35 1 3.3516 -0.2873 -6.3307 36 1 0.9116 -0.0436 -5.7718 37 1 1.8223 -0.5711 -4.3364 38 1 0.3320 0.3831 -4.1439 39 1 0.8051 1.5848 -2.4642 40 1 5.2735 2.6640 -0.1268 41 1 3.6276 3.3610 0.1986 42 1 3.4372 2.1546 2.3234 43 1 5.2531 2.1876 2.2772 44 1 3.7288 -0.1826 1.6459 45 1 5.3444 0.1660 0.8925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675031056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:23 Heat of formation + Delta-G solvation = -30.475362 kcal Electronic energy + Delta-G solvation = -26694.321264 eV Core-core repulsion = 23134.369014 eV Total energy + Delta-G solvation = -3559.952250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87635 -38.56589 -37.23458 -36.44096 -34.16978 -33.76716 -32.19446 -29.40934 -28.24090 -26.43027 -26.02214 -25.35206 -24.82809 -22.81256 -21.29893 -20.58937 -19.46723 -18.93860 -17.74046 -17.26997 -16.17923 -15.72609 -15.42784 -15.21596 -14.87842 -14.43755 -14.17612 -14.08507 -13.58005 -13.28798 -13.01932 -12.95129 -12.45131 -12.33321 -12.25702 -12.18123 -11.87802 -11.80035 -11.73976 -11.19211 -11.13606 -10.90630 -10.75857 -10.71251 -10.52922 -10.33988 -10.24328 -10.00341 -9.61965 -9.57881 -9.20799 -8.65369 -8.52732 -8.21100 -6.91876 -6.13710 -3.20438 2.78351 3.03789 3.48332 3.52090 3.57243 3.69310 3.74669 4.57029 4.59407 4.61039 4.80894 4.91716 5.10454 5.16162 5.39007 5.45992 5.51633 5.65088 5.67334 5.80034 5.83688 5.88597 5.99211 6.01196 6.05304 6.08930 6.13836 6.18546 6.31098 6.38077 6.51224 6.55503 6.62762 6.78609 6.79723 6.84456 7.01023 7.15028 7.79111 8.04690 8.08333 8.54425 8.60304 8.64057 9.09279 9.81949 10.27452 11.09587 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.007192 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.269369 B = 3892.213933 C = 5021.802049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.541 3.459 4 O -0.501 6.501 5 C -0.136 4.136 6 C 0.530 3.470 7 O -0.554 6.554 8 N -0.697 5.697 9 C 0.102 3.898 10 C 0.154 3.846 11 H 0.070 0.930 12 C -0.154 4.154 13 N -0.587 5.587 14 C 0.117 3.883 15 C -0.387 4.387 16 H 0.053 0.947 17 C -0.004 4.004 18 N -0.865 5.865 19 Si 1.044 2.956 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.296 1.296 23 C -0.109 4.109 24 C -0.139 4.139 25 C -0.105 4.105 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.395 0.605 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.000 1.000 37 H 0.016 0.984 38 H 0.065 0.935 39 H 0.276 0.724 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -4.543 6.075 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.379 5.379 3 C 0.324 3.676 4 O -0.374 6.374 5 C -0.143 4.143 6 C 0.314 3.686 7 O -0.433 6.433 8 N -0.348 5.348 9 C -0.024 4.024 10 C 0.046 3.954 11 H 0.088 0.912 12 C -0.213 4.213 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.515 4.515 16 H 0.071 0.929 17 C -0.212 4.212 18 N -0.501 5.501 19 Si 0.874 3.126 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.224 1.224 23 C -0.147 4.147 24 C -0.177 4.177 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.228 0.772 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.018 0.982 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.720 -3.917 6.379 8.850 hybrid contribution 1.457 -0.646 -0.547 1.685 sum 6.177 -4.563 5.832 9.643 Atomic orbital electron populations 1.21713 0.78714 1.01578 1.04131 1.45567 1.08051 1.08020 1.76236 1.19295 0.87188 0.84246 0.76853 1.90781 1.68880 1.30831 1.46901 1.22347 0.94551 1.02078 0.95279 1.19826 0.81319 0.82571 0.84870 1.90635 1.34781 1.30351 1.87581 1.45976 1.50330 1.33466 1.05022 1.21986 0.98255 0.97999 0.84133 1.20762 0.86215 0.97351 0.91053 0.91217 1.22124 0.99553 1.00833 0.98812 1.43886 0.99545 1.03026 1.84552 1.21026 0.96665 0.87248 0.97893 1.19673 1.10574 0.87171 1.34070 0.92929 1.25556 1.00895 1.01802 0.92897 1.70771 1.36854 1.29726 1.12752 0.83850 0.77214 0.75783 0.75761 1.21356 1.22113 1.22390 1.22789 1.00838 0.95281 0.95824 1.22850 1.02581 0.95823 0.96423 1.22830 1.01596 0.96947 0.92916 0.91757 0.92880 0.88878 0.77231 0.74546 0.92510 0.92619 0.92345 0.93589 0.93313 0.98158 0.96582 0.91680 0.91306 0.89272 0.88909 0.89764 0.90716 0.90959 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.71 59.85 0.64 1.96 16 2 N -0.73 -11.72 5.71 -67.08 -0.38 -12.11 16 3 C 0.54 9.89 5.96 -10.99 -0.07 9.83 16 4 O -0.50 -11.03 15.96 5.56 0.09 -10.94 16 5 C -0.14 -2.21 1.05 -156.01 -0.16 -2.38 16 6 C 0.53 9.82 6.85 -10.99 -0.08 9.74 16 7 O -0.55 -11.07 15.96 5.55 0.09 -10.98 16 8 N -0.70 -13.68 5.28 -60.30 -0.32 -14.00 16 9 C 0.10 1.92 4.92 -4.04 -0.02 1.90 16 10 C 0.15 3.03 2.88 -67.93 -0.20 2.84 16 11 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 12 C -0.15 -2.59 9.19 37.16 0.34 -2.24 16 13 N -0.59 -13.56 2.13 -173.48 -0.37 -13.93 16 14 C 0.12 2.66 9.18 59.85 0.55 3.21 16 15 C -0.39 -10.13 8.95 -15.06 -0.13 -10.27 16 16 H 0.05 1.43 8.05 -52.49 -0.42 1.01 16 17 C 0.00 -0.11 4.48 -17.43 -0.08 -0.19 16 18 N -0.86 -23.38 11.39 55.49 0.63 -22.75 16 19 Si 1.04 24.61 30.05 -169.99 -5.11 19.50 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.11 -1.61 7.09 -25.92 -0.18 -1.80 16 24 C -0.14 -1.72 7.81 -25.92 -0.20 -1.92 16 25 C -0.10 -1.38 6.95 -25.92 -0.18 -1.56 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.88 6.90 -51.93 -0.36 1.52 16 29 H 0.40 5.50 8.83 -40.82 -0.36 5.14 16 30 H 0.42 9.20 7.59 -40.82 -0.31 8.90 16 31 H 0.06 1.11 6.89 -51.93 -0.36 0.75 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.81 7.67 -51.92 -0.40 0.41 16 36 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 37 H 0.02 0.33 6.54 -51.93 -0.34 -0.01 16 38 H 0.06 1.64 5.55 -51.93 -0.29 1.35 16 39 H 0.28 7.23 7.10 -40.82 -0.29 6.94 16 40 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 41 H 0.09 1.52 7.35 -51.93 -0.38 1.14 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 45 H 0.10 1.34 7.51 -51.93 -0.39 0.95 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -29.96 363.00 -6.99 -36.95 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -7.32 Total: 13.67 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.23 Total: 9.12 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.44 Total: -62.79 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.92 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.11 Total: 19.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.96 -6.99 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675031056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds