Wall clock time and date at job start Tue Mar 31 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 120.00096 * 2 1 4 4 O 1.21280 * 120.00113 * 4.56274 * 3 2 1 5 5 C 1.50698 * 119.99990 * 184.55748 * 3 2 1 6 6 C 1.50697 * 112.84780 * 65.43840 * 5 3 2 7 7 O 1.21285 * 119.99907 * 234.51516 * 6 5 3 8 8 N 1.34778 * 120.00321 * 54.51149 * 6 5 3 9 9 C 1.46498 * 120.00241 * 185.19215 * 8 6 5 10 10 C 1.53006 * 109.46989 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.46995 * 65.00096 * 10 9 8 12 12 C 1.53001 * 109.47103 * 185.00032 * 10 9 8 13 13 N 1.46502 * 109.46736 * 304.99892 * 10 9 8 14 14 C 1.46498 * 120.00002 * 299.99724 * 13 10 9 15 15 C 1.36938 * 119.99504 * 120.00666 * 13 10 9 16 16 H 1.08002 * 120.00549 * 27.72486 * 15 13 10 17 17 C 1.38812 * 119.99538 * 207.72881 * 15 13 10 18 18 N 1.31620 * 120.00157 * 40.18215 * 17 15 13 19 19 Si 1.86799 * 120.00067 * 220.46379 * 17 15 13 20 20 H 1.48495 * 109.47292 * 179.72467 * 19 17 15 21 21 H 1.48511 * 109.46719 * 299.72370 * 19 17 15 22 22 H 1.48496 * 109.47310 * 59.72141 * 19 17 15 23 23 C 1.53780 * 113.69114 * 196.70373 * 5 3 2 24 24 C 1.53783 * 87.08055 * 89.13206 * 23 5 3 25 25 C 1.53775 * 113.61837 * 294.24242 * 5 3 2 26 26 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47052 * 300.00584 * 1 2 3 28 28 H 1.08996 * 109.46657 * 59.99968 * 1 2 3 29 29 H 0.97006 * 119.99788 * 179.97438 * 2 1 3 30 30 H 0.97001 * 119.99803 * 5.19551 * 8 6 5 31 31 H 1.08994 * 109.47209 * 60.00252 * 9 8 6 32 32 H 1.08997 * 109.47276 * 299.99925 * 9 8 6 33 33 H 1.08994 * 109.47235 * 179.97438 * 12 10 9 34 34 H 1.09002 * 109.47163 * 300.00397 * 12 10 9 35 35 H 1.09007 * 109.47007 * 59.99736 * 12 10 9 36 36 H 1.08995 * 109.47484 * 271.62489 * 14 13 10 37 37 H 1.09000 * 109.47202 * 31.62687 * 14 13 10 38 38 H 1.09002 * 109.46563 * 151.62772 * 14 13 10 39 39 H 0.97000 * 119.99720 * 5.76390 * 18 17 15 40 40 H 1.09001 * 113.61445 * 203.67898 * 23 5 3 41 41 H 1.08995 * 113.61786 * 334.58005 * 23 5 3 42 42 H 1.08999 * 113.61026 * 270.88234 * 24 23 5 43 43 H 1.08994 * 113.61385 * 139.98233 * 24 23 5 44 44 H 1.09001 * 113.61510 * 25.34307 * 25 5 3 45 45 H 1.09001 * 113.61652 * 156.16578 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5355 2.2158 0.0836 5 6 3.6424 1.1692 -0.1037 6 6 4.1384 0.6434 -1.4260 7 8 4.9369 -0.2691 -1.4547 8 7 3.6947 1.1870 -2.5767 9 6 4.0875 0.6035 -3.8618 10 6 3.4530 1.4044 -5.0007 11 1 3.8616 2.4149 -5.0058 12 6 3.7602 0.7233 -6.3359 13 7 2.0023 1.4651 -4.8058 14 6 1.2168 0.2293 -4.7617 15 6 1.3806 2.6770 -4.6649 16 1 1.8080 3.5592 -5.1183 17 6 0.2010 2.7718 -3.9393 18 7 0.0580 2.0884 -2.8236 19 14 -1.1864 3.8630 -4.5505 20 1 -2.3300 3.7851 -3.6064 21 1 -0.7104 5.2671 -4.6367 22 1 -1.6217 3.4045 -5.8942 23 6 4.2885 2.5017 0.3108 24 6 4.3351 1.9431 1.7429 25 6 4.3446 0.5409 1.1116 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.9501 -0.8401 0.0004 30 1 3.1152 1.9646 -2.5540 31 1 3.7468 -0.4306 -3.9106 32 1 5.1728 0.6334 -3.9578 33 1 3.3078 1.2935 -7.1472 34 1 4.8395 0.6780 -6.4809 35 1 3.3516 -0.2873 -6.3307 36 1 0.9116 -0.0436 -5.7718 37 1 1.8223 -0.5711 -4.3364 38 1 0.3320 0.3831 -4.1439 39 1 0.8051 1.5848 -2.4642 40 1 5.2735 2.6640 -0.1268 41 1 3.6276 3.3610 0.1986 42 1 3.4372 2.1546 2.3234 43 1 5.2531 2.1876 2.2772 44 1 3.7288 -0.1826 1.6459 45 1 5.3444 0.1660 0.8925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675031056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:23 Heat of formation + Delta-G solvation = -50.935214 kcal Electronic energy + Delta-G solvation = -26695.208470 eV Core-core repulsion = 23134.369014 eV Total energy + Delta-G solvation = -3560.839456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.22399 -40.07715 -38.76045 -37.87911 -35.62762 -35.43981 -33.92113 -31.16287 -29.55978 -27.92229 -27.76414 -26.51791 -26.17138 -24.65827 -22.65205 -21.92033 -21.12030 -20.28375 -19.47296 -18.88833 -17.47690 -17.19186 -16.93676 -16.83643 -16.23891 -15.84327 -15.72729 -15.64586 -15.39384 -14.92852 -14.68940 -14.35586 -13.82707 -13.74510 -13.71830 -13.52578 -13.33532 -13.18994 -12.98928 -12.76750 -12.63859 -12.48544 -12.43814 -12.31822 -11.98382 -11.93039 -11.85395 -11.48842 -11.45335 -11.00439 -10.68539 -10.22017 -10.06318 -10.04025 -8.84013 -8.15613 -5.21789 1.31743 1.60989 1.61454 1.65119 1.85221 2.15861 2.27218 2.69674 3.17315 3.37065 3.43304 3.57927 3.65971 3.73765 3.76864 3.95779 4.25661 4.32720 4.46689 4.50061 4.57059 4.61039 4.65022 4.67970 4.75733 4.79456 4.91957 4.92130 4.96794 4.99479 5.00468 5.13547 5.18024 5.24937 5.32008 5.35125 5.44936 5.49377 6.04321 6.42781 6.50485 6.57766 7.05184 7.18252 7.24529 7.86742 8.32593 9.06623 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.007192 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.269369 B = 3892.213933 C = 5021.802049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.718 5.718 3 C 0.539 3.461 4 O -0.545 6.545 5 C -0.143 4.143 6 C 0.532 3.468 7 O -0.566 6.566 8 N -0.705 5.705 9 C 0.109 3.891 10 C 0.152 3.848 11 H 0.059 0.941 12 C -0.143 4.143 13 N -0.595 5.595 14 C 0.128 3.872 15 C -0.392 4.392 16 H 0.036 0.964 17 C -0.043 4.043 18 N -0.879 5.879 19 Si 1.084 2.916 20 H -0.296 1.296 21 H -0.288 1.288 22 H -0.290 1.290 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.094 4.094 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.408 0.592 30 H 0.404 0.596 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.005 0.995 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.275 0.725 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -5.670 6.481 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.323 3.677 4 O -0.422 6.422 5 C -0.149 4.149 6 C 0.317 3.683 7 O -0.446 6.446 8 N -0.354 5.354 9 C -0.017 4.017 10 C 0.045 3.955 11 H 0.077 0.923 12 C -0.202 4.202 13 N -0.319 5.319 14 C -0.018 4.018 15 C -0.521 4.521 16 H 0.054 0.946 17 C -0.248 4.248 18 N -0.516 5.516 19 Si 0.912 3.088 20 H -0.223 1.223 21 H -0.214 1.214 22 H -0.217 1.217 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.132 4.132 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.242 0.758 30 H 0.240 0.760 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.043 -5.095 6.774 10.410 hybrid contribution 1.088 -0.319 -0.701 1.333 sum 7.131 -5.414 6.073 10.819 Atomic orbital electron populations 1.21663 0.78621 1.03449 1.02079 1.45546 1.08224 1.08125 1.75015 1.19641 0.88015 0.84032 0.75973 1.90758 1.69929 1.32413 1.49082 1.22454 0.93419 1.03853 0.95217 1.20133 0.80845 0.82077 0.85198 1.90622 1.35389 1.30791 1.87836 1.46093 1.50256 1.33180 1.05841 1.21923 0.99020 0.97232 0.83484 1.20892 0.84187 0.97484 0.92913 0.92299 1.22000 1.01573 1.00229 0.96431 1.43923 1.01047 1.02184 1.84701 1.20863 0.95864 0.87443 0.97591 1.19641 1.11170 0.87828 1.33446 0.94597 1.26397 1.02550 1.02901 0.92988 1.70823 1.37081 1.30586 1.13139 0.83272 0.75137 0.75096 0.75251 1.22277 1.21434 1.21680 1.22860 1.00612 0.93746 0.97948 1.22787 1.03832 0.94553 0.94958 1.22856 1.01557 0.97712 0.91029 0.87936 0.92789 0.93024 0.75759 0.76022 0.92979 0.90945 0.93144 0.90532 0.93069 0.97680 0.95303 0.94344 0.91369 0.88148 0.91228 0.90269 0.87740 0.89419 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 10.71 127.77 1.37 4.08 16 2 N -0.72 -22.63 5.71 -484.53 -2.77 -25.40 16 3 C 0.54 19.67 5.96 87.66 0.52 20.19 16 4 O -0.55 -24.63 15.96 -3.03 -0.05 -24.68 16 5 C -0.14 -4.52 1.05 -53.15 -0.06 -4.58 16 6 C 0.53 19.16 6.85 87.66 0.60 19.76 16 7 O -0.57 -21.56 15.96 -3.04 -0.05 -21.61 16 8 N -0.70 -27.40 5.28 -463.06 -2.44 -29.85 16 9 C 0.11 3.95 4.92 86.38 0.42 4.38 16 10 C 0.15 5.85 2.88 44.99 0.13 5.98 16 11 H 0.06 2.38 7.89 -2.39 -0.02 2.36 16 12 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 13 N -0.59 -27.48 2.13 -702.77 -1.50 -28.98 16 14 C 0.13 5.78 9.18 127.77 1.17 6.95 16 15 C -0.39 -20.80 8.95 84.03 0.75 -20.05 16 16 H 0.04 2.00 8.05 -2.91 -0.02 1.98 16 17 C -0.04 -2.34 4.48 84.86 0.38 -1.96 16 18 N -0.88 -48.61 11.39 21.65 0.25 -48.36 16 19 Si 1.08 50.62 30.05 68.60 2.06 52.69 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 C -0.11 -3.27 7.09 31.12 0.22 -3.04 16 24 C -0.12 -2.78 7.81 31.12 0.24 -2.53 16 25 C -0.09 -2.24 6.95 31.12 0.22 -2.02 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.12 6.90 -2.39 -0.02 2.11 16 29 H 0.41 10.70 8.83 -92.70 -0.82 9.88 16 30 H 0.40 18.15 7.59 -92.71 -0.70 17.44 16 31 H 0.05 1.94 6.89 -2.39 -0.02 1.93 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.59 7.67 -2.38 -0.02 1.57 16 36 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.03 1.19 6.54 -2.39 -0.02 1.18 16 38 H 0.04 1.95 5.55 -2.39 -0.01 1.94 16 39 H 0.28 14.80 7.10 -92.71 -0.66 14.15 16 40 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 41 H 0.07 2.33 7.35 -2.39 -0.02 2.31 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 45 H 0.11 2.50 7.51 -2.39 -0.02 2.48 16 Total: -1.00 -65.25 363.00 1.73 -63.52 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.41 Total: 39.38 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.64 Total: 23.29 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -6.46 Total: -132.59 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.10 Total: -46.29 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.69 kcal Total: -65.25 1.73 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675031056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.587 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds