Wall clock time and date at job start Tue Mar 31 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99516 * 2 1 4 4 N 1.34772 * 120.00092 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00129 * 174.83114 * 4 2 1 6 6 C 1.46505 * 119.99715 * 354.83239 * 4 2 1 7 7 C 1.50699 * 109.47295 * 90.00074 * 6 4 2 8 8 O 1.21280 * 119.99659 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99950 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99824 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.67427 * 34.29761 * 10 9 7 12 12 C 1.54889 * 110.75450 * 271.06514 * 10 9 7 13 13 C 1.54466 * 104.09988 * 203.89726 * 12 10 9 14 14 C 1.53871 * 106.68675 * 23.33763 * 13 12 10 15 15 H 1.08998 * 110.03409 * 240.87352 * 14 13 12 16 16 C 1.53007 * 110.07005 * 119.46970 * 14 13 12 17 17 N 1.46497 * 109.47198 * 67.80891 * 16 14 13 18 18 C 1.36936 * 119.99577 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00527 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99656 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99639 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47024 * 89.99900 * 22 20 18 24 24 H 1.48498 * 109.47112 * 210.00061 * 22 20 18 25 25 H 1.48502 * 109.47425 * 330.00162 * 22 20 18 26 26 C 1.54265 * 106.59936 * 0.16576 * 14 13 12 27 27 H 1.09002 * 109.47585 * 274.81904 * 1 2 3 28 28 H 1.09008 * 109.47130 * 34.81988 * 1 2 3 29 29 H 1.08999 * 109.47250 * 154.82013 * 1 2 3 30 30 H 1.08998 * 109.46926 * 275.05409 * 5 4 2 31 31 H 1.08999 * 109.47313 * 35.05289 * 5 4 2 32 32 H 1.08995 * 109.47239 * 155.05242 * 5 4 2 33 33 H 1.08998 * 109.47169 * 329.99505 * 6 4 2 34 34 H 1.09010 * 109.46611 * 209.99949 * 6 4 2 35 35 H 0.97000 * 119.99847 * 359.72458 * 9 7 6 36 36 H 1.09002 * 110.48835 * 322.42243 * 12 10 9 37 37 H 1.09002 * 110.49219 * 85.06571 * 12 10 9 38 38 H 1.08999 * 109.85543 * 264.09914 * 13 12 10 39 39 H 1.08998 * 110.12353 * 142.72708 * 13 12 10 40 40 H 1.09003 * 109.46828 * 187.80987 * 16 14 13 41 41 H 1.08998 * 109.47025 * 307.80805 * 16 14 13 42 42 H 0.96998 * 120.00273 * 0.02562 * 17 16 14 43 43 H 0.97002 * 119.99372 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.48393 * 217.71525 * 26 14 13 45 45 H 1.08989 * 110.49221 * 95.06488 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6414 -1.1697 -0.1148 6 6 1.4528 -2.4334 0.1132 7 6 1.0923 -2.9309 -1.2629 8 8 1.4117 -2.2906 -2.2421 9 7 0.4150 -4.0874 -1.4053 10 6 0.0651 -4.5713 -2.7430 11 1 0.8426 -4.3121 -3.4616 12 6 -1.3059 -4.0060 -3.1900 13 6 -1.8076 -5.0218 -4.2399 14 6 -1.0900 -6.3510 -3.9468 15 1 -0.4892 -6.6484 -4.8063 16 6 -2.1143 -7.4402 -3.6218 17 7 -2.8931 -7.7522 -4.8228 18 6 -3.8758 -8.7045 -4.7732 19 1 -4.0771 -9.2253 -3.8487 20 6 -4.6134 -9.0006 -5.9114 21 7 -5.5583 -9.9156 -5.8636 22 14 -4.2648 -8.1004 -7.5106 23 1 -3.2385 -8.8447 -8.2839 24 1 -5.5139 -8.0065 -8.3081 25 1 -3.7648 -6.7346 -7.2111 26 6 -0.1797 -6.1007 -2.7268 27 1 -0.3634 0.0863 1.0240 28 1 -0.3634 0.8437 -0.5868 29 1 -0.3634 -0.9300 -0.4372 30 1 3.9235 -1.1255 -1.1667 31 1 4.0482 -0.3036 0.4071 32 1 4.0391 -2.0818 0.3301 33 1 0.5432 -2.2786 0.6935 34 1 2.0816 -3.1704 0.6129 35 1 0.1631 -4.6015 -0.6222 36 1 -1.9938 -3.9613 -2.3456 37 1 -1.1845 -3.0193 -3.6369 38 1 -1.5551 -4.6741 -5.2416 39 1 -2.8861 -5.1520 -4.1503 40 1 -1.5958 -8.3367 -3.2819 41 1 -2.7830 -7.0874 -2.8367 42 1 -2.7121 -7.2848 -5.6533 43 1 -6.0740 -10.1221 -6.6588 44 1 0.7618 -6.6388 -2.8366 45 1 -0.6843 -6.3966 -1.8072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676909094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:37 Heat of formation + Delta-G solvation = -63.817165 kcal Electronic energy + Delta-G solvation = -24052.362756 eV Core-core repulsion = 20490.964696 eV Total energy + Delta-G solvation = -3561.398060 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73558 -39.60067 -38.21556 -35.76725 -35.02337 -33.59502 -31.39546 -30.89467 -29.37355 -29.03641 -27.50451 -26.06964 -24.45883 -21.99324 -21.56990 -20.80852 -19.65190 -19.39830 -17.80740 -17.56819 -17.44191 -16.83881 -16.09823 -15.67954 -15.56594 -15.14097 -14.55385 -14.24821 -13.87675 -13.72279 -13.55006 -13.44974 -13.09612 -13.03586 -12.85220 -12.77483 -12.37690 -12.29619 -12.23649 -12.08361 -11.66903 -11.45781 -10.99981 -10.93101 -10.56595 -10.50661 -10.43027 -10.30521 -10.23324 -10.02036 -9.60686 -9.27970 -9.09353 -8.91049 -7.24649 -5.78841 -3.14127 2.15509 2.23569 2.48380 2.97543 3.36192 3.39291 3.44323 4.14574 4.29359 4.40017 4.55250 4.57657 4.63542 4.68313 4.79371 4.85439 4.95848 5.01199 5.23260 5.30527 5.42466 5.44583 5.45664 5.46661 5.52573 5.54332 5.65261 5.75932 5.86409 5.92731 5.96567 6.02918 6.14407 6.26134 6.37507 6.48066 6.66909 6.77546 6.83922 7.18314 7.75713 7.89020 7.97502 8.40489 9.19896 9.92411 10.12379 11.39628 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.002471 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.226188 B =11327.620161 C =11511.365981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.521 3.479 3 O -0.542 6.542 4 N -0.602 5.602 5 C 0.086 3.914 6 C 0.090 3.910 7 C 0.487 3.513 8 O -0.526 6.526 9 N -0.720 5.720 10 C 0.138 3.862 11 H 0.094 0.906 12 C -0.131 4.131 13 C -0.119 4.119 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.756 5.756 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 C -0.119 4.119 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.623 15.007 15.599 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.311 3.689 3 O -0.419 6.419 4 N -0.335 5.335 5 C -0.056 4.056 6 C -0.038 4.038 7 C 0.271 3.729 8 O -0.401 6.401 9 N -0.371 5.371 10 C 0.034 3.966 11 H 0.112 0.888 12 C -0.169 4.169 13 C -0.157 4.157 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.402 5.402 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.158 4.158 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.044 15.883 14.976 27.092 hybrid contribution -0.088 0.016 -0.971 0.975 sum 15.956 15.898 14.005 26.524 Atomic orbital electron populations 1.21956 0.91664 1.05149 1.04721 1.20769 0.90666 0.82797 0.74703 1.90714 1.70826 1.30841 1.49524 1.47439 1.07567 1.05059 1.73455 1.21678 0.78689 1.02798 1.02429 1.21560 0.99830 0.87543 0.94880 1.21274 0.78155 0.81324 0.92162 1.90760 1.52947 1.56070 1.40334 1.46067 1.57691 1.23652 1.09739 1.22088 0.97230 0.93895 0.83432 0.88811 1.22750 0.95786 0.99042 0.99358 1.22207 1.01588 0.93708 0.98237 1.21924 0.96631 0.96050 0.97328 0.90788 1.20711 0.91252 0.94052 0.90163 1.42723 1.42222 1.47176 1.08046 1.19057 1.08600 1.11925 0.97821 0.89288 1.24683 0.98175 0.98791 0.97593 1.69705 1.24804 1.34876 1.28886 0.86547 0.77344 0.79764 0.84892 1.21097 1.21743 1.20235 1.22587 1.00010 0.93587 0.99579 0.88632 0.88534 0.90410 0.92259 0.90495 0.91136 0.86988 0.86936 0.76435 0.91365 0.91629 0.92117 0.90254 0.95678 0.95528 0.80621 0.93064 0.91083 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.35 36.00 0.34 -0.90 16 2 C 0.52 5.48 7.77 -10.99 -0.09 5.39 16 3 O -0.54 -7.88 16.73 5.56 0.09 -7.79 16 4 N -0.60 -5.03 2.36 -182.95 -0.43 -5.46 16 5 C 0.09 0.66 10.46 59.85 0.63 1.29 16 6 C 0.09 0.45 5.51 -5.19 -0.03 0.42 16 7 C 0.49 4.13 7.16 -10.99 -0.08 4.05 16 8 O -0.53 -7.04 16.12 5.56 0.09 -6.95 16 9 N -0.72 -5.11 5.19 -51.88 -0.27 -5.38 16 10 C 0.14 1.36 3.21 -65.94 -0.21 1.15 16 11 H 0.09 1.10 7.62 -51.93 -0.40 0.70 16 12 C -0.13 -1.46 6.53 -24.97 -0.16 -1.63 16 13 C -0.12 -1.63 6.19 -25.51 -0.16 -1.79 16 14 C -0.10 -1.38 2.96 -89.50 -0.26 -1.64 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.17 2.98 5.27 -4.04 -0.02 2.95 16 17 N -0.76 -17.49 5.20 -59.90 -0.31 -17.80 16 18 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 19 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 22 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 C -0.12 -1.20 5.98 -25.07 -0.15 -1.35 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.08 0.49 6.01 -51.93 -0.31 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.64 7.51 -51.93 -0.39 0.25 16 32 H 0.07 0.33 7.84 -51.93 -0.41 -0.08 16 33 H 0.11 0.27 6.70 -51.93 -0.35 -0.08 16 34 H 0.11 0.24 7.86 -51.92 -0.41 -0.17 16 35 H 0.40 1.61 8.54 -40.82 -0.35 1.27 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.36 8.20 5.41 -40.82 -0.22 7.98 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.68 7.73 -51.94 -0.40 0.28 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -37.27 365.04 -7.17 -44.43 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.45 Total: 3.66 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.45 Total: 0.96 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.24 Total: -57.09 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.18 Total: -14.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.27 -7.17 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676909094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.384 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds