Wall clock time and date at job start Tue Mar 31 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99516 * 2 1 4 4 N 1.34772 * 120.00092 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00129 * 174.83114 * 4 2 1 6 6 C 1.46505 * 119.99715 * 354.83239 * 4 2 1 7 7 C 1.50699 * 109.47295 * 90.00074 * 6 4 2 8 8 O 1.21280 * 119.99659 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99950 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99824 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.67427 * 34.29761 * 10 9 7 12 12 C 1.54889 * 110.75450 * 271.06514 * 10 9 7 13 13 C 1.54466 * 104.09988 * 203.89726 * 12 10 9 14 14 C 1.53871 * 106.68675 * 23.33763 * 13 12 10 15 15 H 1.08998 * 110.03409 * 240.87352 * 14 13 12 16 16 C 1.53007 * 110.07005 * 119.46970 * 14 13 12 17 17 N 1.46497 * 109.47198 * 67.80891 * 16 14 13 18 18 C 1.36936 * 119.99577 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00527 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99656 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99639 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47024 * 89.99900 * 22 20 18 24 24 H 1.48498 * 109.47112 * 210.00061 * 22 20 18 25 25 H 1.48502 * 109.47425 * 330.00162 * 22 20 18 26 26 C 1.54265 * 106.59936 * 0.16576 * 14 13 12 27 27 H 1.09002 * 109.47585 * 274.81904 * 1 2 3 28 28 H 1.09008 * 109.47130 * 34.81988 * 1 2 3 29 29 H 1.08999 * 109.47250 * 154.82013 * 1 2 3 30 30 H 1.08998 * 109.46926 * 275.05409 * 5 4 2 31 31 H 1.08999 * 109.47313 * 35.05289 * 5 4 2 32 32 H 1.08995 * 109.47239 * 155.05242 * 5 4 2 33 33 H 1.08998 * 109.47169 * 329.99505 * 6 4 2 34 34 H 1.09010 * 109.46611 * 209.99949 * 6 4 2 35 35 H 0.97000 * 119.99847 * 359.72458 * 9 7 6 36 36 H 1.09002 * 110.48835 * 322.42243 * 12 10 9 37 37 H 1.09002 * 110.49219 * 85.06571 * 12 10 9 38 38 H 1.08999 * 109.85543 * 264.09914 * 13 12 10 39 39 H 1.08998 * 110.12353 * 142.72708 * 13 12 10 40 40 H 1.09003 * 109.46828 * 187.80987 * 16 14 13 41 41 H 1.08998 * 109.47025 * 307.80805 * 16 14 13 42 42 H 0.96998 * 120.00273 * 0.02562 * 17 16 14 43 43 H 0.97002 * 119.99372 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.48393 * 217.71525 * 26 14 13 45 45 H 1.08989 * 110.49221 * 95.06488 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6414 -1.1697 -0.1148 6 6 1.4528 -2.4334 0.1132 7 6 1.0923 -2.9309 -1.2629 8 8 1.4117 -2.2906 -2.2421 9 7 0.4150 -4.0874 -1.4053 10 6 0.0651 -4.5713 -2.7430 11 1 0.8426 -4.3121 -3.4616 12 6 -1.3059 -4.0060 -3.1900 13 6 -1.8076 -5.0218 -4.2399 14 6 -1.0900 -6.3510 -3.9468 15 1 -0.4892 -6.6484 -4.8063 16 6 -2.1143 -7.4402 -3.6218 17 7 -2.8931 -7.7522 -4.8228 18 6 -3.8758 -8.7045 -4.7732 19 1 -4.0771 -9.2253 -3.8487 20 6 -4.6134 -9.0006 -5.9114 21 7 -5.5583 -9.9156 -5.8636 22 14 -4.2648 -8.1004 -7.5106 23 1 -3.2385 -8.8447 -8.2839 24 1 -5.5139 -8.0065 -8.3081 25 1 -3.7648 -6.7346 -7.2111 26 6 -0.1797 -6.1007 -2.7268 27 1 -0.3634 0.0863 1.0240 28 1 -0.3634 0.8437 -0.5868 29 1 -0.3634 -0.9300 -0.4372 30 1 3.9235 -1.1255 -1.1667 31 1 4.0482 -0.3036 0.4071 32 1 4.0391 -2.0818 0.3301 33 1 0.5432 -2.2786 0.6935 34 1 2.0816 -3.1704 0.6129 35 1 0.1631 -4.6015 -0.6222 36 1 -1.9938 -3.9613 -2.3456 37 1 -1.1845 -3.0193 -3.6369 38 1 -1.5551 -4.6741 -5.2416 39 1 -2.8861 -5.1520 -4.1503 40 1 -1.5958 -8.3367 -3.2819 41 1 -2.7830 -7.0874 -2.8367 42 1 -2.7121 -7.2848 -5.6533 43 1 -6.0740 -10.1221 -6.6588 44 1 0.7618 -6.6388 -2.8366 45 1 -0.6843 -6.3966 -1.8072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676909094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:37 Heat of formation + Delta-G solvation = -91.880127 kcal Electronic energy + Delta-G solvation = -24053.579657 eV Core-core repulsion = 20490.964696 eV Total energy + Delta-G solvation = -3562.614961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43109 -40.41180 -39.20751 -36.70519 -36.30170 -34.81114 -33.26371 -31.50395 -30.47629 -29.92138 -28.41470 -26.74750 -25.93620 -23.71708 -22.37644 -21.62675 -20.67881 -20.28057 -19.50621 -18.39438 -18.12962 -17.55055 -17.00056 -16.65525 -16.46646 -16.30829 -15.93512 -15.57223 -15.02239 -14.71703 -14.51815 -14.38617 -14.27062 -14.05767 -13.78694 -13.58028 -13.41121 -13.33532 -13.01119 -12.95697 -12.89102 -12.74495 -12.41796 -12.13645 -11.99597 -11.84688 -11.73604 -11.58073 -11.28130 -11.21771 -11.03048 -10.94836 -10.01278 -9.77675 -9.27004 -8.02542 -5.34839 1.37816 1.40212 1.43137 1.47762 1.62113 1.90121 2.35482 2.48311 3.29273 3.55782 3.58112 3.59353 3.77682 3.89859 4.05197 4.08575 4.25335 4.36935 4.38858 4.45857 4.47540 4.52833 4.53899 4.62095 4.63980 4.68487 4.77197 4.89267 4.95214 4.97878 5.03167 5.16130 5.18768 5.25527 5.35759 5.40592 5.51273 5.62339 5.77282 6.20104 6.22280 6.63509 7.04681 7.09401 7.31726 7.87344 8.04822 9.19065 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.002471 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.226188 B =11327.620161 C =11511.365981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.602 5.602 5 C 0.084 3.916 6 C 0.090 3.910 7 C 0.487 3.513 8 O -0.580 6.580 9 N -0.704 5.704 10 C 0.147 3.853 11 H 0.076 0.924 12 C -0.123 4.123 13 C -0.120 4.120 14 C -0.094 4.094 15 H 0.070 0.930 16 C 0.162 3.838 17 N -0.760 5.760 18 C -0.231 4.231 19 H 0.059 0.941 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.252 1.252 26 C -0.106 4.106 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.421 0.579 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.028 0.972 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.085 0.915 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.786 15.322 17.135 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.478 6.478 4 N -0.333 5.333 5 C -0.059 4.059 6 C -0.036 4.036 7 C 0.273 3.727 8 O -0.459 6.459 9 N -0.357 5.357 10 C 0.042 3.958 11 H 0.094 0.906 12 C -0.161 4.161 13 C -0.158 4.158 14 C -0.114 4.114 15 H 0.089 0.911 16 C 0.036 3.964 17 N -0.406 5.406 18 C -0.362 4.362 19 H 0.077 0.923 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.780 3.220 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.176 1.176 26 C -0.144 4.144 27 H 0.143 0.857 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.259 0.741 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.234 16.167 16.576 28.865 hybrid contribution -0.446 -0.154 -1.363 1.443 sum 16.789 16.013 15.213 27.744 Atomic orbital electron populations 1.21967 0.89131 1.05261 1.06507 1.21459 0.92094 0.82684 0.73806 1.90682 1.72054 1.32843 1.52183 1.47589 1.07937 1.05809 1.71982 1.21726 0.78844 1.04143 1.01159 1.21924 1.01909 0.86712 0.93052 1.21886 0.77076 0.80808 0.92886 1.90760 1.55115 1.57661 1.42407 1.45861 1.56955 1.23472 1.09367 1.21767 0.95839 0.93620 0.84596 0.90597 1.22665 0.96767 0.97776 0.98921 1.22159 1.00173 0.94479 0.99016 1.21837 0.95970 0.94419 0.99132 0.91136 1.20920 0.91676 0.95496 0.88289 1.42786 1.41688 1.46112 1.09978 1.19068 1.08907 1.11758 0.96474 0.92330 1.25499 0.98490 1.00228 1.01512 1.69882 1.26571 1.37234 1.29839 0.85443 0.76911 0.79637 0.80033 1.20533 1.22393 1.17644 1.22491 0.99856 0.93690 0.98402 0.85698 0.89535 0.89311 0.94504 0.91726 0.87469 0.83509 0.82909 0.74092 0.90203 0.92611 0.92542 0.92498 0.95560 0.95363 0.80249 0.93404 0.89663 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.35 71.24 0.67 -1.38 16 2 C 0.51 10.21 7.77 87.66 0.68 10.90 16 3 O -0.60 -17.78 16.73 -3.04 -0.05 -17.83 16 4 N -0.60 -8.79 2.36 -851.13 -2.01 -10.80 16 5 C 0.08 1.19 10.46 127.77 1.34 2.52 16 6 C 0.09 0.52 5.51 85.63 0.47 0.99 16 7 C 0.49 6.72 7.16 87.66 0.63 7.35 16 8 O -0.58 -14.76 16.12 -3.03 -0.05 -14.81 16 9 N -0.70 -7.22 5.19 -436.43 -2.27 -9.49 16 10 C 0.15 2.49 3.21 46.28 0.15 2.64 16 11 H 0.08 1.63 7.62 -2.38 -0.02 1.61 16 12 C -0.12 -2.48 6.53 31.74 0.21 -2.27 16 13 C -0.12 -3.08 6.19 31.39 0.19 -2.89 16 14 C -0.09 -2.39 2.96 -10.07 -0.03 -2.42 16 15 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.16 5.56 5.27 86.38 0.46 6.02 16 17 N -0.76 -34.42 5.20 -343.44 -1.78 -36.21 16 18 C -0.23 -13.00 10.47 84.04 0.88 -12.12 16 19 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 21 N -0.98 -62.90 13.97 21.65 0.30 -62.59 16 22 Si 0.95 45.39 27.74 68.60 1.90 47.29 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 26 C -0.11 -1.75 5.98 31.67 0.19 -1.57 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.09 0.86 6.01 -2.39 -0.01 0.84 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.07 7.51 -2.39 -0.02 1.05 16 32 H 0.11 0.67 7.84 -2.39 -0.02 0.65 16 33 H 0.15 -0.10 6.70 -2.39 -0.02 -0.12 16 34 H 0.15 -0.26 7.86 -2.38 -0.02 -0.28 16 35 H 0.42 1.18 8.54 -92.71 -0.79 0.39 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.72 7.62 -2.39 -0.02 1.70 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.36 15.94 5.41 -92.71 -0.50 15.44 16 43 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.26 7.73 -2.39 -0.02 1.24 16 Total: -1.00 -85.55 365.04 1.98 -83.57 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.36 Total: 16.50 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.30 Total: 4.37 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.76 Total: -119.09 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.10 Total: -32.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -85.55 1.98 -83.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676909094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.309 kcal (2) G-P(sol) polarization free energy of solvation -85.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds